BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69650.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908543 jgi|Araly1|908543|Al_scaffold_0002_1624 455 3e-127
Ahg899955 jgi|Araly1|899955|Al_scaffold_0004_605 104 1e-21
> Ahg908543 jgi|Araly1|908543|Al_scaffold_0002_1624
Length=879
Score = 455 bits (246), Expect = 3e-127
Identities = 313/345 (91%), Gaps = 6/345 (2%)
Strand=Plus/Plus
Query 381 TGAATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCTTACCAATTGGGAAATCCT 440
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 438 TGAATGTGAGTTTGGTGTTGATGTCATTGTTTCTTCACCTCTTACCAATTGGGAAATCCT 497
Query 441 CTCTTTTCATGATGAGAAACTCTCTTATCCCAAGGTCACTTGGAGTGTTAAGAACTTTTC 500
||| ||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 498 CTC-TTT--TGATGAGAAACTCTCTTATCCCAAGTTCTCTTGGAGTGTTGAGAACTTTTC 554
Query 501 TCAGTGGAAAGAAAATGAGTGTTCCAAACCAAACAGATTTTCAATAGGAGGAAGGGAATG 560
||||| ||||||||| |||| || || | |||| ||||||||||||||||||||||||||
Sbjct 555 TCAGTTGAAAGAAAAGGAGTTTTACACATCAAAAAGATTTTCAATAGGAGGAAGGGAATG 614
Query 561 GGTTCTAAAGCTGTTTCCGAAGGGCAACTCTAGAGCAAAAGGCAAATATTTATCCGTGTT 620
| ||||| |||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||
Sbjct 615 GTTTCTAGAGCTGTATCCGAGGGGCAACGCTAGAGCAAATGGCAAATATTTATCCGT-TT 673
Query 621 -TCTTTATTTAGCTGATAATGAAACACTAAAACCAGATGAGAAGATTTTCACGCAAGTAG 679
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 674 ATCATAATTTAGCTGATAGTGAAACACTAAAACCAGATGAGAAGATTTTCACGCAAGTAC 733
Query 680 TTGTGCGAATTCTAAACCCGCTTGGATCCAATCACGTGGCAAGCC 724
||||||| |||||||||||||||||||||||||| || || |||
Sbjct 734 ATGTGCGAGTTCTAAACCCGCTTGGATCCAATCACTTGACA-GCC 777
Score = 370 bits (200), Expect = 1e-101
Identities = 302/346 (87%), Gaps = 28/346 (8%)
Strand=Plus/Plus
Query 1 ATGGGTGCATCATGCTCAGCACCAGTTTCTTCTACTATCAAGAAAAACTGGAGAGATCAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTGCATCATGCTCAGCACCAGTTTCTTCTACAATCAAGAAAAACTGGAGAGATCAT 60
Query 61 CCTCCTTCTTCTTATTCTCTCAAGATTCACAACTTCTCCCAACTTGAGAAAACTACTTCC 120
|||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||
Sbjct 61 CCTCCTTCTTCTTATTCTCTCAAGATTCACAACTTCTCACAATTTGAGAATTCTACTGCC 120
Query 121 TTCTCTGGTCATAAATACCAATCTCGTCTTTTCTCCTCTGGTG-ATATAACTGG-GA--- 175
||||||| |||||||||||||||||| |||||||| ||||||| |||||||||| ||
Sbjct 121 TTCTCTGATCATAAATACCAATCTCGCCTTTTCTCTTCTGGTGGATATAACTGGAGATTG 180
Query 176 A-C--------G-----TAA---A--GGACAATGGAAGTGGATTTATTTCGATGTACGTG 216
| | | ||| | |||||||| |||||| |||||||| |||||||||
Sbjct 181 ATCATATATCCGAAAGGTAACGTAAAGGACAATGAAAGTGGGTTTATTTCTATGTACGTG 240
Query 217 GAATTAGACAGCTCAAGCTTGATGGAATCCAAACCACCAACTGAAGTGTTTGCGGAACTC 276
|||||||||||| ||||||||| ||||||| | |||||||||||| ||||||||||||
Sbjct 241 GAATTAGACAGCACAAGCTTGACAGAATCCA--C-ACCAACTGAAGTCTTTGCGGAACTC 297
Query 277 CGCTTCTTTGTCTACAACAAGAAACAAAACAAGTACTTTACTAAAG 322
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 CGCTTCTTTGTCTACAACAAGAAA-AAAACAAGTACTTTACTAAAG 342
> Ahg899955 jgi|Araly1|899955|Al_scaffold_0004_605
Length=885
Score = 104 bits (56), Expect = 1e-21
Identities = 107/130 (82%), Gaps = 10/130 (8%)
Strand=Plus/Plus
Query 383 AATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCTTACCAATTGGGAAA-TCCTC 441
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||
Sbjct 437 AATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCCTACCAAATGGGAAACTA-TC 495
Query 442 TCTTTTCATGATGAGAAACTCTCTTA-TCCCAAGGTCACTTGGAGTGTTAAGAACTTT-T 499
|||||| ||| | ||||| | ||| ||| ||| || |||||| | | ||||| ||| |
Sbjct 496 TCTTTTGATGC--A-AAACT-TATTAATCCAAAGTTCTCTTGGACTATCAAGAA-TTTCT 550
Query 500 CTCAGT-GGA 508
|| ||| |||
Sbjct 551 CTGAGTTGGA 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5