BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69650.1 Length=885 Score E Sequences producing significant alignments: (Bits) Value Ahg908543 jgi|Araly1|908543|Al_scaffold_0002_1624 455 3e-127 Ahg899955 jgi|Araly1|899955|Al_scaffold_0004_605 104 1e-21 > Ahg908543 jgi|Araly1|908543|Al_scaffold_0002_1624 Length=879 Score = 455 bits (246), Expect = 3e-127 Identities = 313/345 (91%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 381 TGAATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCTTACCAATTGGGAAATCCT 440 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 438 TGAATGTGAGTTTGGTGTTGATGTCATTGTTTCTTCACCTCTTACCAATTGGGAAATCCT 497 Query 441 CTCTTTTCATGATGAGAAACTCTCTTATCCCAAGGTCACTTGGAGTGTTAAGAACTTTTC 500 ||| ||| ||||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 498 CTC-TTT--TGATGAGAAACTCTCTTATCCCAAGTTCTCTTGGAGTGTTGAGAACTTTTC 554 Query 501 TCAGTGGAAAGAAAATGAGTGTTCCAAACCAAACAGATTTTCAATAGGAGGAAGGGAATG 560 ||||| ||||||||| |||| || || | |||| |||||||||||||||||||||||||| Sbjct 555 TCAGTTGAAAGAAAAGGAGTTTTACACATCAAAAAGATTTTCAATAGGAGGAAGGGAATG 614 Query 561 GGTTCTAAAGCTGTTTCCGAAGGGCAACTCTAGAGCAAAAGGCAAATATTTATCCGTGTT 620 | ||||| |||||| ||||| ||||||| |||||||||| ||||||||||||||||| || Sbjct 615 GTTTCTAGAGCTGTATCCGAGGGGCAACGCTAGAGCAAATGGCAAATATTTATCCGT-TT 673 Query 621 -TCTTTATTTAGCTGATAATGAAACACTAAAACCAGATGAGAAGATTTTCACGCAAGTAG 679 || | |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 674 ATCATAATTTAGCTGATAGTGAAACACTAAAACCAGATGAGAAGATTTTCACGCAAGTAC 733 Query 680 TTGTGCGAATTCTAAACCCGCTTGGATCCAATCACGTGGCAAGCC 724 ||||||| |||||||||||||||||||||||||| || || ||| Sbjct 734 ATGTGCGAGTTCTAAACCCGCTTGGATCCAATCACTTGACA-GCC 777 Score = 370 bits (200), Expect = 1e-101 Identities = 302/346 (87%), Gaps = 28/346 (8%) Strand=Plus/Plus Query 1 ATGGGTGCATCATGCTCAGCACCAGTTTCTTCTACTATCAAGAAAAACTGGAGAGATCAT 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGGTGCATCATGCTCAGCACCAGTTTCTTCTACAATCAAGAAAAACTGGAGAGATCAT 60 Query 61 CCTCCTTCTTCTTATTCTCTCAAGATTCACAACTTCTCCCAACTTGAGAAAACTACTTCC 120 |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| || Sbjct 61 CCTCCTTCTTCTTATTCTCTCAAGATTCACAACTTCTCACAATTTGAGAATTCTACTGCC 120 Query 121 TTCTCTGGTCATAAATACCAATCTCGTCTTTTCTCCTCTGGTG-ATATAACTGG-GA--- 175 ||||||| |||||||||||||||||| |||||||| ||||||| |||||||||| || Sbjct 121 TTCTCTGATCATAAATACCAATCTCGCCTTTTCTCTTCTGGTGGATATAACTGGAGATTG 180 Query 176 A-C--------G-----TAA---A--GGACAATGGAAGTGGATTTATTTCGATGTACGTG 216 | | | ||| | |||||||| |||||| |||||||| ||||||||| Sbjct 181 ATCATATATCCGAAAGGTAACGTAAAGGACAATGAAAGTGGGTTTATTTCTATGTACGTG 240 Query 217 GAATTAGACAGCTCAAGCTTGATGGAATCCAAACCACCAACTGAAGTGTTTGCGGAACTC 276 |||||||||||| ||||||||| ||||||| | |||||||||||| |||||||||||| Sbjct 241 GAATTAGACAGCACAAGCTTGACAGAATCCA--C-ACCAACTGAAGTCTTTGCGGAACTC 297 Query 277 CGCTTCTTTGTCTACAACAAGAAACAAAACAAGTACTTTACTAAAG 322 |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 298 CGCTTCTTTGTCTACAACAAGAAA-AAAACAAGTACTTTACTAAAG 342 > Ahg899955 jgi|Araly1|899955|Al_scaffold_0004_605 Length=885 Score = 104 bits (56), Expect = 1e-21 Identities = 107/130 (82%), Gaps = 10/130 (8%) Strand=Plus/Plus Query 383 AATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCTTACCAATTGGGAAA-TCCTC 441 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | || Sbjct 437 AATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCCTACCAAATGGGAAACTA-TC 495 Query 442 TCTTTTCATGATGAGAAACTCTCTTA-TCCCAAGGTCACTTGGAGTGTTAAGAACTTT-T 499 |||||| ||| | ||||| | ||| ||| ||| || |||||| | | ||||| ||| | Sbjct 496 TCTTTTGATGC--A-AAACT-TATTAATCCAAAGTTCTCTTGGACTATCAAGAA-TTTCT 550 Query 500 CTCAGT-GGA 508 || ||| ||| Sbjct 551 CTGAGTTGGA 560 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32785708620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5