BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69660.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315967 jgi|Araly1|315967|fgenesh1_pm.C_scaffold_2001000 904 0.0
Ahg895076 jgi|Araly1|895076|Al_scaffold_0006_3072 374 6e-103
> Ahg315967 jgi|Araly1|315967|fgenesh1_pm.C_scaffold_2001000
Length=693
Score = 904 bits (489), Expect = 0.0
Identities = 624/691 (90%), Gaps = 2/691 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCCACACCACCAACTGAGGCGTTTGCGGAACTCCGCTTCTATGTCTACAACAAG 60
|||||||||| ||||| |||| | | |||||| ||||| || |||| ||| |||||||||
Sbjct 1 ATGGAATCCATACCACAAACTCAAGTGTTTGCTGAACTTCGTTTCTTTGTATACAACAAG 60
Query 61 AAAGAAAACAAGTACTTTACTATTCAAGATGTGGAAGTAAAGCGTTTCAATGCACTTAGA 120
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 AAAGAAAACAAGTATTTTACTATTCAAGATGTAGAAGTAAAGCGGTTCAATGCACTTAGA 120
Query 121 ATGGTGTGGGGATTGCTAAAAGTTCTTTCATATGATACATTTACTAATCCTGAAAATGGA 180
||||||||||||||| | |||||||| ||||||||||||| | ||| |||||| ||||
Sbjct 121 ATGGTGTGGGGATTGATCCAAGTTCTTCCATATGATACATTCATTAACCCTGAATTTGGA 180
Query 181 TTCATCTTTGAGGGTGGTGAATGTGAGTTTGGTGTTGATGTCCTTGTTGCTCCACCCCTT 240
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACATCTTTGAGGGAGGTGAATGTGAGTTTGGTGTTGATGTCCTTGTTGCTCCACCCCTT 240
Query 241 ACTAATTGGGAAATTCTCTCTTTTGATGAGAAACTCTCTCCTCCCAAATTCTCTTGGAAT 300
|||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 241 ACTAATTGGGAAATCCTCTCTTTTGATGAGAAACTCTCTCATCCCAAGTTCTCTTGGACT 300
Query 301 CTTAAGAATTTTTCTGAGTTGAAAGAGGATGTTTACACATCAAACAAATATCCCATGGGA 360
|||||| ||||||||| |||||||||||||||||||||||||| |||| | ||||||||
Sbjct 301 GTTAAGAGTTTTTCTGACTTGAAAGAGGATGTTTACACATCAAATAAATTTTCCATGGGA 360
Query 361 GGAAAGGAATGGGTTCTAAAGCTGTATCCAAAGGGAAACTCTAGAGCAGATGGCAAATAT 420
|||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 361 GGAAAGGAATGGATTCTAAAGCTGTATCCAAAGGGTGACTCTCCAGCAAATGGCAAATAT 420
Query 421 TTATCCCTATATGTGCATTTAGCTGATAGTGAAACACTAAAATCAGATGAGAAGAATTTC 480
|||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 421 TTATCCCTTTATCTGCATTTAGCTGATAGTGAAACACTAAAACCAGATGAGAAGGTTTTC 480
Query 481 AAGCAAGGACATGTGCGAGTTCTTAACCC-ACTTGGATCTAATCACGTCGAAGTACAATC 539
||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||
Sbjct 481 AAGCAAGGACATGTGCGAGTTCTTAACCCGA-TTGGATCTAATCACGTGGAAGGCCAATA 539
Query 540 GAGCTGCTGGTACAAGGAATCAAGCAGGGGTTGGGGTTGGGATCACTTTCTGTCTATAGC 599
||| | ||| |||||||| || ||| |||||||||||||||||| ||| ||||| ||||
Sbjct 540 TAGCCGTTGGCACAAGGAACCAGGCAAGGGTTGGGGTTGGGATCAGTTTATGTCTTTAGC 599
Query 600 TAATCTTCGGAAGACTTACTTGGACAAAGAAGATGCGTTGAATGTTGAAATCGAATTCAA 659
| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 TGATCTTCGGAAGACCTACTTGGACAAAGAAGATGCGTTGAATGTTGAGGTCGAATTCAA 659
Query 660 AGTTGTTTCTGCAACCAAGTATTCTCCCATT 690
|||||||||||| ||||| ||||||||||||
Sbjct 660 AGTTGTTTCTGCTACCAAATATTCTCCCATT 690
> Ahg895076 jgi|Araly1|895076|Al_scaffold_0006_3072
Length=930
Score = 374 bits (202), Expect = 6e-103
Identities = 539/697 (77%), Gaps = 41/697 (6%)
Strand=Plus/Plus
Query 7 TCCACACCACCAACTGAGGCGTTTGCGGAA-CTCC-GCTTCTATGTCTACAACAAGAAAG 64
|||||| | |||||||||| || ||| || |||| | || | ||| | ||||| ||||
Sbjct 253 TCCACAACTCCAACTGAGGTGTATGC-AAATCTCCAG-TTTTTTGTTTTTAACAAAAAAG 310
Query 65 AAAACAAGTACTTTACTATTCAAGATGTGGAAGTA-AAGC-GTTTCAATGCACTTAGAAT 122
|||||||||||||||||||||||||||||||| | |||| ||| |||| |||| ||||
Sbjct 311 AAAACAAGTACTTTACTATTCAAGATGTGGAA-TCGAAGCCGTT-CAATACACTAAGAAC 368
Query 123 GGTGTGGGGATTGCTAAAAGTTCTTTCA-TATGATACATTTACTAATCCTGAA-AATGGA 180
|||||||||||| |||| ||| || | ||||||||| | | ||| | || ||||||
Sbjct 369 AATGTGGGGATTGCCGCAAGTGCTTGCACT-TGATACATTCAATGATCGT-AATAATGGA 426
Query 181 TTCATCTTTGAGGGTGGTGAATGTGAGTTTGGTGTTGATGTCCTTGTTGCTCCACC-CCT 239
| | ||||||| || | | | |||||||||||||||||| || |||||| |||||| ||
Sbjct 427 TACCTCTTTGATGGAGATCATTGTGAGTTTGGTGTTGATATCATTGTTGTTCCACCTCCA 486
Query 240 TACTAATTGGGAAAT-TCTCTCTTTTGATGAGAAACTCTC-TCCTCCCAAATTCTCTTGG 297
|| || |||||||| | | ||||||| ||| || || || | ||| || |||||||||
Sbjct 487 -ACCAAATGGGAAATGT-TATCTTTTG-TGA-AA-CT-TCCTTATCCTAAGTTCTCTTGG 540
Query 298 AATCTTAAGAATTTTTCTGAGTTGAAAGAGGATGTTTACACATCAAACAAATATCCCATG 357
| | |||| || || |||||| | ||||| || ||||||||| ||| | | | | |
Sbjct 541 ATTGTTAAAAACTTCTCTGAGATAAAAGATAATCCTTACACATCTGACAGCTTTTCAAAG 600
Query 358 GGAGGAAAGGAATGGGTTCTAAAGCTGTATCCAAAGGGAAACTCTAGAGCAGATGGCAAA 417
||||||||| |||||||||| ||| ||||||| ||||| |||||| | ||||| | |||
Sbjct 601 GGAGGAAAGAAATGGGTTCTCAAGGTGTATCCCAAGGGCTACTCTACACCAGATAGTAAA 660
Query 418 TATTTATCCCTATATGTGCATTTAGCTGATAGTGAAACACTAAA-ATCAGATGAGAAGAA 476
| |||||| | ||| || ||||||||||| |||||| |||| | | ||||| || ||
Sbjct 661 TGGTTATCCATTTATCTGTATTTAGCTGATGGTGAAATTTTAAAGAAC-GATGAAAA-AA 718
Query 477 TTT-CAAGCAAGGACATGTGCGAGTTCTTA-ACCCACTTGGATCTAATCACGTCGA-AGT 533
||| | ||||| ||||||| |||| | |||||| |||||| |||||| | | | |
Sbjct 719 TTTACGTGCAAGCACATGTGAAAGTTGA-AGACCCACGTGGATCCAATCACTTA-ACA-T 775
Query 534 ACAATCG-AGCTGCTGGTACAAG-GAATCAAGC-AGGGGTTGGGGTTGGGATCACTTTC- 589
||| | | ||| |||| ||| || ||||| | | ||| |||||||||||||| |
Sbjct 776 GCAAGCTTAACTGGTGGTTCAATAGAC-CAAGCCAAAG-TTGTGGTTGGGATCACTT-CG 832
Query 590 TGTCTATAGCT-AATCTTCGGAAGACTTACTTGGACAAAGAA-GATGCGTTGAATGTTGA 647
|||||| |||| || ||||| ||| ||||||||||||| ||| ||| | |||||||||||
Sbjct 833 TGTCTACAGCTGAA-CTTCGAAAGTCTTACTTGGACAA-GAAAGATACTTTGAATGTTGA 890
Query 648 AATCGAATTCAAAGTTGTTTCTGCAACCAAGTATTCT 684
||||||| |||||||||||||| ||||| ||||||
Sbjct 891 GGTCGAATTTAAAGTTGTTTCTGCGACCAACTATTCT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5