BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69670.1
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476100 jgi|Araly1|476100|fgenesh2_kg.2__1230__AT1G69670.1 2121 0.0
Ahg472710 jgi|Araly1|472710|fgenesh2_kg.1__2664__AT1G26830.1 2078 0.0
> Ahg476100 jgi|Araly1|476100|fgenesh2_kg.2__1230__AT1G69670.1
Length=2049
Score = 2121 bits (1148), Expect = 0.0
Identities = 1338/1427 (94%), Gaps = 24/1427 (2%)
Strand=Plus/Plus
Query 59 TTGATCCAAAATACGCCGATAAAACTTGGAAGATCCTTGAACATGCGATTCATGAGATTT 118
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 32 TTGATCCAAAATACGCCGATAAAACTTGGAAGATTCTGGAACATGCGATTCATGAGATTT 91
Query 119 ACAATCACAACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 ACAATCACAACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGG 151
Query 179 TTCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATTTCATC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TTCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATTTCATC 211
Query 239 TCAAAGAGATATGTAAGTCTATTGAAGAAGCTCAAGGAGGAGCATTT-TTAGAATTGCTT 297
|||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||
Sbjct 212 TCAAAGAGATATGTAAGTCTATTGAAGAAGCTCATGGAGGTGC-TTTCTTAGAATTGCTT 270
Query 298 AATAGGAAATGGAATGATCATAACAAAGCGTTGCAAATGATTAGGGATATTCTCATGTAT 357
|||||||||||||| |||| ||||||||||||| || | | | | | |
Sbjct 271 GATAGGAAATGGAATCATCACAACAAAGCGTTGC-AA--A-T---G--------A--T-T 312
Query 358 ATGGATCGTACTTACGTTTCTACTACTAAGAAAACTCATGTTCATGAGCTTGGACTTCAT 417
|||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 313 ATGGATCGGACTTACGTTTCTAGTACTAAGAAAAGGCATGTTCATGAGCTTGGACTTCAT 372
Query 418 CTCTGGAGAGATAATGTTGTGTATTCGAGTAAGATTCAGACTAGGCTATTGAATACGCTT 477
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 373 CTTTGGAGGGATAATGTTGTGTATTCGAGTAAGATTCAGACTAGGCTTTTGAATACGCTT 432
Query 478 CTTGATTTAGTTCATAAGGAACGGACTGGTGAAGTTATAGATAGGGTGTTGATGAGGAAT 537
|||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 433 CTTGATTTAGTTTATAAGGAACGGACCGGTGAAGTTATAGATAGGTTGTTGATGAGGAAT 492
Query 538 GTGATTAAGATGTTTATGGATTTAGGTGAATCTGTTTATCAAGATGATTTTGAGAAGCCG 597
||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 493 GTGATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGATGATTTCGAGAAGCCG 552
Query 598 TTTTTGGAAGCTTCTGCTGAGTTTTATAAGGTTGAGTCA-ATGGAGTTTATTGAGTCTTG 656
|||||||||||||||||||||||||| |||||||||||| | || |||||||||||||||
Sbjct 553 TTTTTGGAAGCTTCTGCTGAGTTTTACAAGGTTGAGTCACA-GGGGTTTATTGAGTCTTG 611
Query 657 TGATTGTGGTGAGTATTTGAAGAAAGCTGAGAAGCCTTTAGTGGAAGAAGTCGAAAGGGT 716
|||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 612 TGATTGTGGTGATTATTTGAAGAAAGCGGAGAAACCTTTTGTGGAAGAAGTCGAAAGGGT 671
Query 717 TG-TGAATTATTTGGATGCTAAGAGCGAAGCGAAGATTACTAGTGTGGTTGAAAGAGAGA 775
|| | | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 672 TGCT-CACTATTTGGATGCCAAGAGCGAAGCGAAGATTACTAGTGTGGTTGAAAGAGAAA 730
Query 776 TGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTAATATGC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTAATATGC 790
Query 836 TTTTGAATGATAAGTATGAGGATATGGGTAGAATGTATAGTTTGTTCCGTAGGGTTGCTA 895
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 791 TTTTGAATGATAAGTATGAGGATATGGGTAGAATGTACAGTTTGTTCCGCAGGGTTGCCA 850
Query 896 ATGGTCTTGTAACGGTTAGAGATGTTATGACTTTGCATCTTAGGGAAATGGGAAAACAGT 955
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 851 ATGGTCTTGTTACTATTAGAGATGTTATGACTTTGCATCTTAGGGAGATGGGAAAACAGC 910
Query 956 TGGTTACTGATCCAGAGAAATCAAAGGATCCGGTTGAATTTGTGCAGCGTCTATTGGATG 1015
||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 911 TGGTTACCGATCCAGAGAAATCAAAGGTTCCCGTTGAATTTGTGCAGCGTCTATTAGATG 970
Query 1016 AGCGGGATAAGTATGACAGAATTATCAACATGGCATTTAACAACGATAAGACGTTCCAGA 1075
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 971 AGCGGGATAAGTATGACAAAATTATCAACATGGCATTTAACAACGATAAGACGTTCCAGA 1030
Query 1076 ATGCGCTAAATTCTTCGTTTGAGTATTTCGTCAACTTGAACACACGTTCTCCTGAGTTTA 1135
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1031 ATGCGCTGAATTCTTCGTTTGAGTATTTCCTCAACTTGAACACCCGTTCTCCTGAGTTTA 1090
Query 1136 TCTCCCTGTTTGTTGATGATAAGCTACGAAAAGGACTAAAAGGTGTGGGAGAGGAGGATG 1195
||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1091 TCTCCTTGTTTGTTGATGATAAACTACGAAAAGGACTAAAAGGTGTGGGGGAGGAGGATG 1150
Query 1196 TCGATCTTATTCTTGATAAGGTGATGATGTTGTTTCGCTACTTACAGGAGAAAGACGTTT 1255
| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1151 TGGATCTTATTCTTGATACGGTGATGATGTTGTTTCGCTATTTACAGGAGAAAGACGTTT 1210
Query 1256 TTGAGAAATATTACAAACAGCATCTGGCGAAAAGGCTTTTATCTGGAAAAACTGTGTCGG 1315
|||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 1211 TTGAGAAATACTACAAACAACGTCTGGCAAAAAGGCTTTTATCTGGAAAAACTGTGTCGG 1270
Query 1316 ATGATGCAGAGAGGAATCTGATAGTGAAACTGAAGACGGAATGTGGGTATCAATTCACTT 1375
||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1271 ATGATGCTGAGAGGAATCTGATAGTTAAACTGAAGACAGAATGTGGGTATCAGTTCACTT 1330
Query 1376 CGAAACTTGAAGGTATGTTCACTGACATGAAGACCTCACACGACACGCTGCTAGGATTTT 1435
||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1331 CGAAACTGGAAGGTATGTTCACTGACATGAAGACCTCACACGATACACTGCTAGGATTTT 1390
Query 1436 ATAATAGCCATCCCGAGCTTTCAGAAGGACCTACACTTGTTGTTCAG 1482
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1391 ATAATAGCCATCCCGAGCTTTCAGAAGGACCGACACTTGTTGTTCAG 1437
Score = 568 bits (307), Expect = 9e-161
Identities = 331/343 (97%), Gaps = 0/343 (0%)
Strand=Plus/Plus
Query 1510 CAGCCAACCATACAATGTAACCTACCTGCAGAAGTTTCTGTTCTGTGTGAGAAGTTCAGG 1569
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CAGCCAACCATACAGTGTAACCTACCTGCAGAAGTTTCTGTTCTGTGTGAGAAGTTCAGG 1494
Query 1570 TCATATTACCTCGGGACTCACACCGGTAGGAGATTGTCTTGGCAAACGAATATGGGAACA 1629
|||||||||||||||||||||||||| | || ||||||||||||||| ||||||| ||||
Sbjct 1495 TCATATTACCTCGGGACTCACACCGGCATGAAATTGTCTTGGCAAACCAATATGGAAACA 1554
Query 1630 GCAGATATCAAAGCAGTGTTTGGAAAGGGTCAGAAGCATGAACTAAACGTTTCGACTTTC 1689
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1555 GCAGATATCAAAGCAGTGTTTGGAAAGGGTCAGAAGCTTGAACTAAATGTTTCGACTTTT 1614
Query 1690 CAAATGTGTGTCCTTATGTTGTTCAACAACTCTGATCGACTAAGCTACAAAGAGATCGAA 1749
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1615 CAAATGTGTGTCCTTATGTTGTTCAACAACTCTGATCGACTGAGCTACAAAGAGATCGAA 1674
Query 1750 CAGGCAACTGAAATCCCCACCCCAGACCTAAAGCGTTGCTTGCAGTCAATGGCGTGTGTA 1809
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1675 CAGGCAACTGAAATCCCCACCTCAGACCTAAAGCGTTGCTTGCATTCAATGGCGTGTGTA 1734
Query 1810 AAAGGTAAAAACGTGCTAAGAAAAGAACCAATGAGCAAGGAGA 1852
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AAAGGTAAAAACGTGCTAAGAAAAGAACCAATGAGCAAGGAGA 1777
Score = 300 bits (162), Expect = 4e-80
Identities = 180/189 (95%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 2014 GTGAGGATAATGAAGTCTAGACGAGTGTTGGATCACAACAACATAATCGCAGAGGTCACC 2073
|||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1861 GTGAGGATTATGAAGGCAAGACGAGTGTTGGATCACAACAACATTATCGCAGAGGTCACC 1920
Query 2074 AAACAGTTGCAGACGCGGTTCTTGGCAAACCCAACAGAGATAAAGAAGAGAATTGAATCA 2133
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 AAACAGTTGCAGTCGCGGTTCTTGGCAAACCCAACAGAGATAAAGAAGAGAATTGAATCG 1980
Query 2134 CTCATTGAGCGTGATTTCTTGGAGAGGGATAATACAGACCGGAAACTTTACCGCTATCTA 2193
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 1981 CTCATTGAGCGTGATTTCTTGGGGAGGGATAATACAGACCGAAAACTTTACCGCTATTTA 2040
Query 2194 GCGTAAAAA 2202
|||||||||
Sbjct 2041 GCGTAAAAA 2049
Score = 65.8 bits (35), Expect = 1e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 ATGAGTAATCAGAAGAAGAGAAATTTCCAGATTGA 35
|||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTAATCAGAAGAAGAGAAATTTCCAGATTGA 35
> Ahg472710 jgi|Araly1|472710|fgenesh2_kg.1__2664__AT1G26830.1
Length=2555
Score = 2078 bits (1125), Expect = 0.0
Identities = 1871/2231 (84%), Gaps = 52/2231 (2%)
Strand=Plus/Plus
Query 1 ATGAGTAATCAGAAGAAGAGAAATTTCCAGATTGAAGCGTTTAAGCAACGAGTCGTCGTT 60
|||||||||||||||||||| ||||| ||||| || ||||||||||| || ||||| ||
Sbjct 212 ATGAGTAATCAGAAGAAGAGGAATTTTCAGATAGAGGCGTTTAAGCATCGCGTCGTTGTA 271
Query 61 GATCCAAAATACGCCGATAAAACTTGGAAGATCCTTGAACATGCGATTCATGAGATTTAC 120
||||| |||||||| |||||||||||| |||| ||||| | |||||| ||| |||||||
Sbjct 272 GATCCCAAATACGCTGATAAAACTTGGCAGATTCTTGAGCGTGCGATCCATCAGATTTAT 331
Query 121 AATCACA-ACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGGT 179
||||| | | ||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 332 AATCA-AGATGCTAGCGGTCTCAGTTTCGAAGAACTTTACAGAAATGCGTACAACATGGT 390
Query 180 TCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATT-TCATC 238
|| || |||| |||||| |||||||||||||| || || | |||||||| || |||||
Sbjct 391 CCTGCACAAGTTTGGTGAGAAGCTTTATACTGGGTTTATTGCTACTATGAC-TTCTCATC 449
Query 239 TCAAAGAGATATGT--AAGTC-TATTGAAGAAGCTCAAGGAGGAG-CATT-TTTAGAATT 293
||||||| | | || ||| | ||| || | |||||||||||| | |||| || |||
Sbjct 450 TCAAAGA-A-AAGTCCAAG-CTTATCGAGGCAGCTCAAGGAGG-GTCATTCCTT-GAAGA 504
Query 294 GCTTAATAGGAAATGGAATGATCATAACAAAGCGTT-GCAAATGATTAGGGATATTCTCA 352
|||||||| |||||||||||| || ||||||||||| | | |||||| | || |||||||
Sbjct 505 GCTTAATAAGAAATGGAATGAGCACAACAAAGCGTTAG-AGATGATTCGAGACATTCTCA 563
Query 353 TGTATATGGATCGTACTTACGTTTCTA-CTACTAAGAAA-ACTCATGTTCATGAGCTTGG 410
||||||||||| | |||||| || | | || || ||| |||||||||||| | | ||
Sbjct 564 TGTATATGGATAGGACTTACATTGAGAGC-ACCAA-AAAGACTCATGTTCATCCGATGGG 621
Query 411 ACTTCATC-TCTGGAGAGATAATGTTGTGTA-TTCGAGTAAGATTCAGACTAGGCTAT-T 467
||| | | | ||||| |||||||||||| | ||| | |||||| || || ||||| | |
Sbjct 622 GCTT-AACTTGTGGAGGGATAATGTTGTGCATTTC-ACTAAGATACATACAAGGCT-TCT 678
Query 468 GAATACGCTTCTTGATTTAGTTCATAAGGAACGGACTGGTGAAGTTATAGATAGGGTGTT 527
|| || ||||||||| |||| || ||||||||||||||||||||||| || |||| |||
Sbjct 679 AAACACTCTTCTTGATCTAGTGCAGAAGGAACGGACTGGTGAAGTTATTGACAGGGGGTT 738
Query 528 GATGAGGAATGTGATTAAGATGTTTATGGATTTAGGTGAATCTGTTTATCAAGATGATTT 587
|||||||||||| ||||||||||||||||| || ||||||||||| ||||| || |||||
Sbjct 739 GATGAGGAATGTCATTAAGATGTTTATGGACTTGGGTGAATCTGTGTATCAGGAGGATTT 798
Query 588 TGAGAAGCCGTTTTTGGAAGCTTCTGCTGAGTTTTATAAGGTTGAGTC-AATGGAGTTTA 646
|||||||||||||||||| || ||| |||||||||||||||||||||| | ||||||||
Sbjct 799 TGAGAAGCCGTTTTTGGATGCGTCTTCTGAGTTTTATAAGGTTGAGTCTCA-GGAGTTTA 857
Query 647 TTGAGTCTTGTGATTGTGGTGAGTATTTGAAGAAAGCTGAG-AA-GCCTTTAGTGGAAGA 704
|||| |||||||||||||| || || | |||||||| ||| || ||| | | | |||||
Sbjct 858 TTGAATCTTGTGATTGTGGGGATTACCTAAAGAAAGCAGAGAAACGCC-TAACT-GAAGA 915
Query 705 AGTCGAAAGGGTTGTGA-ATTATTTGGATGCTAAGAGCGAAGCGAAGATTACTAGTGTGG 763
| | || ||||| | | | || |||||||| |||||||||| |||||||||||||||||
Sbjct 916 AATAGAGAGGGTAG-CACACTACTTGGATGCCAAGAGCGAAGAGAAGATTACTAGTGTGG 974
Query 764 TTGA-AAGAGAGATGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGT 822
|||| || |||||||||||| ||||| |||||||||| ||||| |||||||| ||||||
Sbjct 975 TTGAGAA-AGAGATGATTGCCAACCACATGCAGAGACTGGTTCACATGGAGAACTCAGGT 1033
Query 823 TTGGTTAATATGCTTTTGAATGATAAGTATGAGGATATGGGTAGAATGTATAGTTTGTTC 882
|||||||||||||| ||||||| |||||||| ||| ||||||||||||| | |||||
Sbjct 1034 CTGGTTAATATGCTTCTGAATGACAAGTATGATGATTTGGGTAGAATGTACAACTTGTTT 1093
Query 883 CGTAGGGTTGCTAATGGTCTTGTAACGGTTAGAGATGTTATGACTT-TGCATCTTAGGGA 941
|| |||||| ||||||||||||| || || ||||| |||||||||| | |||||||||||
Sbjct 1094 CGCAGGGTTACTAATGGTCTTGTTACTGTCAGAGACGTTATGACTTCT-CATCTTAGGGA 1152
Query 942 AATGGGAAAACAGTTGGTTACTGATCCAGAGAAA-TCAAAGGATCCGGTTGAATTTGTGC 1000
||||||||||| ||||||||||||| || ||| ||||||||||| || |||||||| |
Sbjct 1153 GATGGGAAAACAACTGGTTACTGATCCGGA-AAAGTCAAAGGATCCAGTGGAATTTGTAC 1211
Query 1001 AGCGTCTATTGGATGAGCGGGATAAGTATGACAGAATTATCAACATGGCATTTAACAACG 1060
||||||||||||||||||||||||| ||||||| ||| |||| || |||||| ||| |
Sbjct 1212 AGCGTCTATTGGATGAGCGGGATAAATATGACAAAATCATCAGCACCGCATTTGGCAATG 1271
Query 1061 ATAAGACGTTCCAGAATGCGCTAAATTCTTCGTTTGAGTATTTCGTCAACTTGAACACAC 1120
|||| || || ||||||||||| |||||||| |||||||||||| |||||||||| | |
Sbjct 1272 ATAAAACCTTTCAGAATGCGCTGAATTCTTCATTTGAGTATTTCATCAACTTGAATGCTC 1331
Query 1121 GTTCTCCTGAGTTTATCTCCCTGTTTGTTGATGATAAGCTACGAAAAGGACTAAAAGGTG 1180
||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || |||
Sbjct 1332 GTTCTCCTGAGTTCATCTCACTGTTTGTTGATGACAAGCTACGGAAAGGACTTAAGGGTA 1391
Query 1181 TGGGAGAGGAGGATGTCGATCTTATTCTTGATAAGGTGATGATGTTGTTTCGCTACTTAC 1240
| | || | |||||| || |||| |||||||| || |||||| |||| || || ||||
Sbjct 1392 TCGCCGATGTGGATGTGGAGGTTATCCTTGATAAAGTTATGATGCTGTTCCGTTATTTAC 1451
Query 1241 AGGAGAAAGACGTTTTTGAGAAATATTACAAACAGCATCTGGCGAAAAGGCTTTTATCTG 1300
| |||||||| || |||||||| || ||||| |||||| |||| ||||||||| | || |
Sbjct 1452 AAGAGAAAGATGTCTTTGAGAAGTACTACAAGCAGCATTTGGCTAAAAGGCTTCTCTCAG 1511
Query 1301 GAAAAACTGTGTCGGATGATGCAGAGAGGAATCTGATAGTGAAACTGAAGACGGAATGTG 1360
| ||||||||||| ||||| |||||||||| | | ||||||||||| ||||| |||||||
Sbjct 1512 GCAAAACTGTGTCAGATGAAGCAGAGAGGAGTTTAATAGTGAAACTAAAGACAGAATGTG 1571
Query 1361 GGTATCAATTCACTTCGAAACTT-GAAGGTATGTTCACTGACATGAAGACCTCACACGAC 1419
| ||||| |||||||| ||| || ||||| ||||||||||||||||| || ||| | |||
Sbjct 1572 GCTATCAGTTCACTTC-AAAATTGGAAGGCATGTTCACTGACATGAAAACTTCAGAGGAC 1630
Query 1420 ACGCTGCTAGGATTTTATAATAGCCATCCCGAGCTTTCAGAAGGACCTACACTTGTTGTT 1479
|| ||| || |||||| || || |||||||||||||||||||| |||||| |||||
Sbjct 1631 ACAATGCGCGGGTTTTATGGCAGTCACCCCGAGCTTTCAGAAGGACCAACACTTATTGTT 1690
Query 1480 CAGGTTCTCACAACCGGTTCTTGGCCCACACAGCCAACCA-TACAATGTAACCTACCTGC 1538
||||| || ||||| ||||||||||| |||||||| || ||| ||||| || || ||
Sbjct 1691 CAGGTACTTACAACTGGTTCTTGGCCAACACAGCC-TGCAGTACCTTGTAATCTCCCAGC 1749
Query 1539 AGAAGTTTCTGTTCTGTGTGAGAAGTTCAGGTCATATTACCTCGGGACTCACACCGGTAG 1598
|||||||| ||||| |||||||||||| | || || ||||| ||||| ||||| |||||
Sbjct 1750 TGAAGTTTCAGTTCTCTGTGAGAAGTTCCGTTCCTACTACCTTGGGACCCACACGGGTAG 1809
Query 1599 GAGATTGTCTTGGCAAACGAATATGGGAACAGCAGATATCAAAG-CAGTGTTTGGAAAGG 1657
|||||||| |||||||| || ||||| |||||||||||||||| || | ||||||||||
Sbjct 1810 AAGATTGTCCTGGCAAACAAACATGGGCACAGCAGATATCAAAGCCA-TCTTTGGAAAGG 1868
Query 1658 GTCAGAAGCATGAACTAAACGTTTCGACTTTCCAAATGTGTGTCCTTATGTTGTTCAACA 1717
||||||| |||||||| || || ||||||||||| |||||||| || |||||||||||||
Sbjct 1869 GTCAGAAACATGAACTGAATGTGTCGACTTTCCAGATGTGTGTTCTCATGTTGTTCAACA 1928
Query 1718 ACTCTGATCGACTAAGCTACAAAGAGATCGAACAGGCAACTGAAATCCCCACCCCAGA-C 1776
||||||||||||| ||||||||||| ||||||||||| ||||||||||| | |||| |
Sbjct 1929 ACTCTGATCGACTCAGCTACAAAGAAATCGAACAGGCTACTGAAATCCCGGCAGCAGATC 1988
Query 1777 CTAAAGCGTTGCTTGCAGTCAATGGCGTGTGTAAAAGGTAAAAACGTGCT-AAGAAAAGA 1835
|||| || || |||||||| | ||||||||||| || ||||||||| | ||| |||||
Sbjct 1989 TTAAA-CGCTGTTTGCAGTCGCTAGCGTGTGTAAAGGGCAAAAACGTGATAAAG-AAAGA 2046
Query 1836 ACCAATGAGCAAGGAGATAGCAGAGGAGGACTGGTTTGTTGTGAACGACAGGTTCGCAAG 1895
||| |||||||| || |||| ||||||||| | ||||||||||||||||| ||| | ||
Sbjct 2047 ACCCATGAGCAAAGACATAGGAGAGGAGGATTCGTTTGTTGTGAACGACAAATTCACCAG 2106
Query 1896 CAAGTTCTACAAAGTGAAGATAGGAACTGTGGTGGCACAAAAGgagacagaaccagagaa 1955
|||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||
Sbjct 2107 CAAGTTTTACAAAGTGAAGATCGGAACCGTGGTAGCCCAAAAAGAGACAGAACCGGAGAA 2166
Query 1956 gcaagagacaagacagagagtagaagaagacagaaAACCTCAGATCGAAGCAGCCATCGT 2015
||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct 2167 GCAAGAGACGAGACAGAGAGTGGAGGAAGACAGAAAACCTCAGATTGAAGCAGCCATTGT 2226
Query 2016 GAGGATAATGAAGTCTAGACGAGTGTTGGATCACAACAACATAATCGCAGAGGTCACCAA 2075
||||| |||||||| ||| | | | || ||||||||||||||||||||||| || ||
Sbjct 2227 TAGGATCATGAAGTCCAGAAAAATACTAGACCACAACAACATAATCGCAGAGGTGACGAA 2286
Query 2076 ACAGTTGCAGACGCGGTTCTTGGC-AAACCCAACAGAGATAAAGAAGAGAATTGAATCAC 2134
|||||||||| | |||||| |||| || ||| |||||||||||||||||||| || || |
Sbjct 2287 ACAGTTGCAGCCACGGTTCCTGGCTAATCCC-ACAGAGATAAAGAAGAGAATCGAGTCGC 2345
Query 2135 TCATTGAGCGTGATTTCTTGGAGAGGGATAATACAGACCGGAAACTTTACCGCTATCTAG 2194
||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 2346 TCATTGAACGAGATTTCTTGGAAAGAGATAGTACAGACCGGAAACTTTACCGCTATCTAG 2405
Query 2195 CGTAAAAAAGT 2205
| |||| ||||
Sbjct 2406 CCTAAATAAGT 2416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88026556195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5