BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69680.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908546 jgi|Araly1|908546|Al_scaffold_0002_1627 998 0.0
Ahg355491 jgi|Araly1|355491|fgenesh1_pg.C_scaffold_7002664 876 0.0
> Ahg908546 jgi|Araly1|908546|Al_scaffold_0002_1627
Length=609
Score = 998 bits (540), Expect = 0.0
Identities = 587/610 (96%), Gaps = 2/610 (0%)
Strand=Plus/Plus
Query 234 ATGTCTGTTGAGTTATGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 293
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGGCGAGTTGTGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 60
Query 294 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 120
Query 354 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGGCTGAGGTT 413
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGACTGAGGTT 180
Query 414 GGTGACATTGGCAGTGCCTCTTGGTTCCTTAATGATCTTGCGAGTGAGCAAGATGCTGAA 473
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 181 GGTGACATTGGCAGTGCTTCTTGGTTCCTTAACGATCTTGCTCGTGAGCAAGATGCTGAA 240
Query 474 GGATTTCAGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 533
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATTTCAGTTGATAGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 300
Query 534 ATCTC-TGCTGTTGCGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGG 592
|| || ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 AT-TCCTGCCATTGCGACGACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAAGG 359
Query 593 AAGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATATTCGTCTTAAGGGAGTTGA 652
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 AAGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATCTTCGTCTTAAGGGAGTTGA 419
Query 653 TACAGATGTCTTAGTGACTGCCTATGAACCTATCCTGATAAATCCTCTGAGCGAAAGCGC 712
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 420 TACAGATGTCTTAGTTACTGCGTATGAACCTATCCTGATAAACCCTCTGAGCGAAAGCGC 479
Query 713 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAAAAATGCCAATGTG 772
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAATTATGCCAATGTG 539
Query 773 TGATATCATTAAACAATCACTCTCTACATTCAAAGTCAATGACTGGAATCTTTTCGGTTC 832
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 TGATGTCATTAAACAATCACTCTCTACCTTCAAAGTCAATGACTGGAATCTTTTCGGTTC 599
Query 833 CTCAGCTTGA 842
||||||||||
Sbjct 600 CTCAGCTTGA 609
> Ahg355491 jgi|Araly1|355491|fgenesh1_pg.C_scaffold_7002664
Length=555
Score = 876 bits (474), Expect = 0.0
Identities = 529/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 234 ATGTCTGTTGAGTTATGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 293
||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGTCCGGTGAGTTGTGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCTTCTTC 60
Query 294 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 353
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTTCAGATCATCAGGAAGTGTTT 120
Query 354 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGGCTGAGGTT 413
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGACTGAGGTT 180
Query 414 GGTGACATTGGCAGTGCCTCTTGGTTCCTTAATGATCTTGCGAGTGAGCAAGATGCTGAA 473
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GGTGACATTGGCAGTGCTTCTTGGTTCCTTAATGATCTTGCGCGTGAGCAAGATGCTGAA 240
Query 474 GGATTTCAGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 533
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGATTTCTGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCCTTCAGAAAC 300
Query 534 ATCTCTGCTGTTGCGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGGA 593
||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCCCTGCCATTGGGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGGA 360
Query 594 AGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATATTCGTCTTAAGGG-AGTTGA 652
||||||||||||||||||||||| || |||||||||||| ||||||||||||| | ||||
Sbjct 361 AGAGAAGCACAAAACCTAGTGAGGGTGTATGTGGCAAATCTTCGTCTTAAGGGGA-TTGA 419
Query 653 TACAGATGTCTTAGTGACTGCCTATGAACCTATCCTGATAAATCCTCTGAGCGAAAGCGC 712
||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 420 TACTGATGTCTTAGTGACTGCATATGAACCTATCTTGATAAACCCTCTGAGCGAAAGCGT 479
Query 713 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAAAAATGCCAATGTG 772
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 480 GGATGCTGTGGGATCTGGTTTAGTTGTCCCAGCTTCTCAATCTGGAAAAATGCCAATGTG 539
Query 773 TGATATCATTAAACAA 788
|||| |||||||||||
Sbjct 540 TGATGTCATTAAACAA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5