BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69680.1 Length=1202 Score E Sequences producing significant alignments: (Bits) Value Ahg908546 jgi|Araly1|908546|Al_scaffold_0002_1627 998 0.0 Ahg355491 jgi|Araly1|355491|fgenesh1_pg.C_scaffold_7002664 876 0.0 > Ahg908546 jgi|Araly1|908546|Al_scaffold_0002_1627 Length=609 Score = 998 bits (540), Expect = 0.0 Identities = 587/610 (96%), Gaps = 2/610 (0%) Strand=Plus/Plus Query 234 ATGTCTGTTGAGTTATGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 293 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTGGCGAGTTGTGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 60 Query 294 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 120 Query 354 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGGCTGAGGTT 413 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 121 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGACTGAGGTT 180 Query 414 GGTGACATTGGCAGTGCCTCTTGGTTCCTTAATGATCTTGCGAGTGAGCAAGATGCTGAA 473 ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| Sbjct 181 GGTGACATTGGCAGTGCTTCTTGGTTCCTTAACGATCTTGCTCGTGAGCAAGATGCTGAA 240 Query 474 GGATTTCAGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 533 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGATTTCAGTTGATAGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 300 Query 534 ATCTC-TGCTGTTGCGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGG 592 || || ||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 301 AT-TCCTGCCATTGCGACGACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAAGG 359 Query 593 AAGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATATTCGTCTTAAGGGAGTTGA 652 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 360 AAGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATCTTCGTCTTAAGGGAGTTGA 419 Query 653 TACAGATGTCTTAGTGACTGCCTATGAACCTATCCTGATAAATCCTCTGAGCGAAAGCGC 712 ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 420 TACAGATGTCTTAGTTACTGCGTATGAACCTATCCTGATAAACCCTCTGAGCGAAAGCGC 479 Query 713 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAAAAATGCCAATGTG 772 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 480 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAATTATGCCAATGTG 539 Query 773 TGATATCATTAAACAATCACTCTCTACATTCAAAGTCAATGACTGGAATCTTTTCGGTTC 832 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 540 TGATGTCATTAAACAATCACTCTCTACCTTCAAAGTCAATGACTGGAATCTTTTCGGTTC 599 Query 833 CTCAGCTTGA 842 |||||||||| Sbjct 600 CTCAGCTTGA 609 > Ahg355491 jgi|Araly1|355491|fgenesh1_pg.C_scaffold_7002664 Length=555 Score = 876 bits (474), Expect = 0.0 Identities = 529/556 (95%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 234 ATGTCTGTTGAGTTATGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 293 ||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATGTCCGGTGAGTTGTGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCTTCTTC 60 Query 294 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 353 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTTCAGATCATCAGGAAGTGTTT 120 Query 354 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGGCTGAGGTT 413 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 121 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGACTGAGGTT 180 Query 414 GGTGACATTGGCAGTGCCTCTTGGTTCCTTAATGATCTTGCGAGTGAGCAAGATGCTGAA 473 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 GGTGACATTGGCAGTGCTTCTTGGTTCCTTAATGATCTTGCGCGTGAGCAAGATGCTGAA 240 Query 474 GGATTTCAGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GGATTTCTGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCCTTCAGAAAC 300 Query 534 ATCTCTGCTGTTGCGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGGA 593 ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATCCCTGCCATTGGGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGGA 360 Query 594 AGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATATTCGTCTTAAGGG-AGTTGA 652 ||||||||||||||||||||||| || |||||||||||| ||||||||||||| | |||| Sbjct 361 AGAGAAGCACAAAACCTAGTGAGGGTGTATGTGGCAAATCTTCGTCTTAAGGGGA-TTGA 419 Query 653 TACAGATGTCTTAGTGACTGCCTATGAACCTATCCTGATAAATCCTCTGAGCGAAAGCGC 712 ||| ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| Sbjct 420 TACTGATGTCTTAGTGACTGCATATGAACCTATCTTGATAAACCCTCTGAGCGAAAGCGT 479 Query 713 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAAAAATGCCAATGTG 772 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 480 GGATGCTGTGGGATCTGGTTTAGTTGTCCCAGCTTCTCAATCTGGAAAAATGCCAATGTG 539 Query 773 TGATATCATTAAACAA 788 |||| ||||||||||| Sbjct 540 TGATGTCATTAAACAA 555 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44870673309 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5