BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69690.1
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476101 jgi|Araly1|476101|fgenesh2_kg.2__1231__AT1G69690.1 1901 0.0
> Ahg476101 jgi|Araly1|476101|fgenesh2_kg.2__1231__AT1G69690.1
Length=1293
Score = 1901 bits (1029), Expect = 0.0
Identities = 1163/1222 (95%), Gaps = 31/1222 (3%)
Strand=Plus/Plus
Query 1 ctctctctctctcAGACATAGACACAGCTAAGCTTCCCATCTGAAAGGAGTTTCATGTCC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTCTCGGACATAGACACAGCTAAGCTTCCCATCTGAAAGGAGTTTCATGTCC 60
Query 61 -TAAGGACCATATTATAACCTCTCTATCTCTCTCTAAGTATCAGCaaaaaaaCAGAGATT 119
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTAAGGACC--A-TATAACCTCTCTATCTCTCTCTAAGTAGCAGCAAAAAAACAGAGATT 117
Query 120 TATAGAGAGAGaaaaaaaCTATGGCTCACATAAAGATCTAACAGAGACAGTAGTATAGTC 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TATAGAGAGAG---AAAACTATGGCTCACATAAAGATCTAACAGAGACAGTAGTATAGTC 174
Query 180 CCACTTCCCCACCACCAAAGCTTCGatcatcatcatcatcatcatcatGGATCCGGATCC 239
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 175 CCACTTCCCCACCACCAAAGCTTCGATCATCATCATCA--A-CATCATGGATCCGGATCC 231
Query 240 GGATCAT------AA-C--CATCGACCCAACTTCCCTCTCCAGCTTCTTGATTCTTCTAC 290
||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 232 GGATCATAACCCGAATCATCATCGACCCAACTTCCCTCTCCAGCTTCTTGATTCTTCT-- 289
Query 291 CTCCTCCTCTTCCACTTCCTTAGCCATCATCTCTACTACTTCCGAACCTAACTCCGAACC 350
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 290 -TCCTCCTCTTCCACTTCCTTAGCCATCATCTCTGCTACTTCCGAACCTAACTCCGAACC 348
Query 351 TAAGAAGCCTCCTCCTAAACGAACCTCTACTAAAGACCGACACACCAAAGTCGAAGGCCG 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TAAGAAGCCTCCTCCTAAACGAACCTCTACTAAAGACCGACACACCAAAGTCGAAGGCCG 408
Query 411 AGGCCGTCGGATCCGTATGCCTGCCATGTGTGCTGCACGTGTCTTTCAGCTCACACGTGA 470
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 409 AGGCCGTCGGATCCGTATGCCTGCCATGTGCGCTGCACGTGTCTTTCAGCTCACTCGTGA 468
Query 471 GCTTGGTCACAAATCCGACGGTGAAACTATTGAGTGGCTACTCCAACAAGCAGAACCAGC 530
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 469 GCTTGGTCACAAATCCGACGGTGAAACTATTGAGTGGCTACTCCAACAAGCTGAGCCAGC 528
Query 531 GGTTATAGCCGCTACAGGGACTGGAACCATTCCGGCTAACTTCACTTCTTTAAACATCTC 590
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 529 GGTTATAGCCGCTACAGGAACTGGAACCATTCCTGCTAACTTCACTTCTTTAAACATCTC 588
Query 591 ACTTCGTAGCTCAAGATCTTCTCTCTCTGCTGCTCATCTTCGTACAACTCCTAGTAGCTA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ACTTCGTAGCTCAAGATCTTCTCTCTCTGCTGCTCATCTTCGTACAACTCCTAGTAGCTA 648
Query 651 TTACTTTCATTCACCACATCAGTCCATGACTCATCATCTTCAACATCAGCATCAGGTTCG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTACTTTCATTCACCACATCAGTCCATGACTCATCATCTTCAACATCAGCATCAGGTTCG 708
Query 711 TCCCAAGAACGAGTCACATTCTTCGTCTTCTTCTTCTTCACAGCTTTTAGATCACAACCA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TCCCAAGAACGAGTCACATTCTTCGTCTTCTTCTTCTTCACAGCTTTTAGATCACAACCA 768
Query 771 AATGGGTAACTATCTAGTACAATCAACTGCTGGATCTTTACCTACGAGTCAGAGTCCTGC 830
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AATGGGGAACTATCTAGTACAATCAACTGCTGGATCTTTACCTACGAGTCAGAGTCCTGC 828
Query 831 AACGGCACCGTTTTGGAGTAGTGGTGACAACACACAGAATCTTTGGGCTTTTAATATTAA 890
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 829 TACGGCACCGTTTTGGAGTAGTGGTGACAACACACAGAATCTTTGGGCGTTTAATATCAA 888
Query 891 TCCTCATCATTCCGGTGTTGTCGCCGGAGATGTTTACAACCCCAACAGTGGTGGTAGTGG 950
||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||
Sbjct 889 TCCTCATCATTCCGGTGTTGTGGCCGGAGATGTTTATAACCCCAACGGTGGTGGTGGTGG 948
Query 951 CGGCGGT--AG-TGG------AGTTCATTTGATGAATTTTGCAGCTCCTATTGCTTTGTT 1001
||| || || ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 949 CGGTAGTGGAGCTGGCGGTGGAGTTCATTTGATGAACTTTGCAGCTCCTATTGCTTTGTT 1008
Query 1002 TTCTGGACAGCCTTTGGCTTCTGGTTATGGAGGAGGAGGAGGTGGCGGTGGAGAACATAG 1061
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1009 TTCTGGACAGCCTTTGGCTTCTGGTTATGGAGGAGGAGGAGGTGGCGGCGGAGAACATAG 1068
Query 1062 CCATTATGGAGTTTTAGCGGCGTTGAATGCTGCTTACCGACCGGTGGCGGAGACGGGGAA 1121
||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| |||
Sbjct 1069 CCATTATGGAGTTTTAGCGGCTTTGAATGCTACTTACCGGCCGGTGGCTGAGACGGCGAA 1128
Query 1122 CCATAACAACAACCAGCAAAACCGTGACGGAGATCATCATCACAACCATCAAGAAGATGG 1181
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1129 CCATAACAACAACCAACAAAACCGCGACGGAGATCATCATCACAACCATCAAGAAGATGG 1188
Query 1182 AAGCACCAGTCATCATTCCTAG 1203
||||||||||||||||||||||
Sbjct 1189 AAGCACCAGTCATCATTCCTAG 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61020572490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5