BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69700.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476102 jgi|Araly1|476102|fgenesh2_kg.2__1232__AT1G69700.1 989 0.0
> Ahg476102 jgi|Araly1|476102|fgenesh2_kg.2__1232__AT1G69700.1
Length=671
Score = 989 bits (535), Expect = 0.0
Identities = 617/655 (94%), Gaps = 12/655 (2%)
Strand=Plus/Plus
Query 49 agagagagagagGaa-aaaaaaGGGGAAAGCTTAAGATATTGGAGAGTAACAATGCCTTC 107
||||| ||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 23 AGAGAAAGAGA-GAACAAAAAAAGGGAAAGCTTAAGAAATTGGAGAGTAACAATGCCTTC 81
Query 108 AAATTCAGGAGATGATAATGTTCTTCAAGTTCTCATAAAGAACTTTGATGTCCTTGCTCT 167
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 82 AAATTCTGGAGATGATAATGTTCTTCAAGTTCTCATCAAGAACTTCGATGTCCTTGCTCT 141
Query 168 CCCATTGGTTACACTCGTCTATCCTCTATATGCATCAGTGAAAGCAATAGAGACAAGATC 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CCCATTGGTTACACTCGTCTATCCTCTATATGCATCAGTGAAAGCAATAGAGACAAGATC 201
Query 228 ATTACCAGAAGATGAACAATGGCTTACTTACTGGGTTCTTTACGCACTTATCTCTCTCTT 287
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 202 ATTACCAGAAGATGAACAATGGCTCACTTACTGGGTTCTTTACGCACTCATCTCTCTCTT 261
Query 288 TGAACTCACTTTCTCCAAACCTCTCGAGTGGTTTCCTATATGGCCATACATGAAGTTGTT 347
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 262 TGAACTCACTTTCTCCAAACCTCTCGAGTGGTTTCCGATATGGCCATACATGAAGTTGTT 321
Query 348 TGGGATCTGTTGGTTAGTGTTACCACAATTCAATGGAGCAGAACATATCTACAAACATTT 407
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 322 TGGGATATGTTGGTTAGTGTTACCACAATTTAATGGAGCAGAACATATCTACAAACATTT 381
Query 408 CATTAGACCATTCTACAGAGATCCTCAAAGAGCTACCACCAAAATTTGGTATGTTCCTCA 467
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 CATAAGACCATTCTACAGAGATCCTCAAAGAGCTACCACCAAAATTTGGTATGTTCCTCA 441
Query 468 CAAGAAATTCAATTTCTTCCCTAAACGCGACGACGACGACATTCTCACTGCTGCTGAAAA 527
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 442 TAAGAAATTCAATTTCTTCCCTAAACGCGACGATGACGACATCCTCACTGCTGCTGAGAA 501
Query 528 ATACATGGAACAACACGGTACCGAAGCGTTTGAGCGAATGATCGTTAAGAAGGATAGTTA 587
||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 502 ATACATGGAACAACATGGTACTGAGGCGTTTGAGCGAATGATCGTTAGGAAGGATAGTTA 561
Query 588 TGAAAGAGGTAGGAGTAGTAGAGGAA-TCAATAATCACATGATCTTTGATGATGACTATA 646
||||||||| |||||||||||||||| | |||||| ||||||||||||||||||| ||||
Sbjct 562 TGAAAGAGGAAGGAGTAGTAGAGGAACT-AATAATTACATGATCTTTGATGATGATTATA 620
Query 647 GGTACTAA-TA-A-GTTC-TTAAACCGGTTTAATTAGCTACTTTCAGTTTATAAG 697
|||||||| | | |||| ||||||||||||| |||||||||| || |||||
Sbjct 621 GGTACTAAGTTTATGTTCATTAAACCGGTTTA----GCTACTTTCACTTCATAAG 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5