BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69720.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315973 jgi|Araly1|315973|fgenesh1_pm.C_scaffold_2001006 1280 0.0
Ahg481532 jgi|Araly1|481532|fgenesh2_kg.4__592__AT2G26670.1 634 0.0
Ahg475446 jgi|Araly1|475446|fgenesh2_kg.2__576__AT1G58300.1 473 9e-133
> Ahg315973 jgi|Araly1|315973|fgenesh1_pm.C_scaffold_2001006
Length=858
Score = 1280 bits (693), Expect = 0.0
Identities = 804/859 (94%), Gaps = 2/859 (0%)
Strand=Plus/Plus
Query 97 ATGGCTACAACAAGACTTAACCCCTCTTGCCACTTTCCAGCGAGCACAAGACTCTCTTGC 156
||||||||||||||||||||| | ||||||||||||||| ||||||||||||| | ||
Sbjct 1 ATGGCTACAACAAGACTTAACTCTTCTTGCCACTTTCCATCGAGCACAAGACTTTATTTT 60
Query 157 GAGAGCTATCTCGGTCTGAGAACGACCGGGAGGATTAGTTATGCCCGAACCCTAACTGCT 216
||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct 61 GAGAGCTATCTAGGTCTGAGAACGACCGCGAGGATTAGTTATGCACGAACCCTAACCGCT 120
Query 217 CCACGTGGCTATCTTGCTGTAAAAGCAAACGGTGGTCAAGCTTCCGTGGTGACTGCGGCG 276
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CCACGTGGCTATCTTGCTGTAAAAGCAAACGGTGGTCAAGCTTCGGTGGTGACTGCGGCG 180
Query 277 GCTATAACGGAGAAGCAACAAAAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAGGAG 336
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GCTATAATGGAGAAGCAACAAAAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAAGAG 240
Query 337 ATGAGATTCGTGGCGATGAGATTGCATACGAAAGATCAAGCAAGGGAAGGAGAAAAAGAA 396
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGAGGTTTGTGGCAATGAGATTGCATACGAAAGATCAAGCAAGGGAAGGAGAAAAAGAA 300
Query 397 TCTAGATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAGCCGACTGTGGAAGGATACTTA 456
|||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 301 TCTAAATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAACCAACGGTGGAAGGATACTTA 360
Query 457 CATTTTCTTGTGGATAGTAAGTTGGTTTACGACACGCTTGAAGGGATCATTGATGGA-TC 515
|| |||||||||||||||||||||||||||||||| ||||| |||||||| || || ||
Sbjct 361 CAGTTTCTTGTGGATAGTAAGTTGGTTTACGACACACTTGAGGGGATCATCGA-CGATTC 419
Query 516 CAATTTCCCAACTTATGCTGGTTTCAAGAACACGGGATTAGAAAGAGCAGAGAGTTTGCG 575
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 420 CAATTTCCCAACTTATGCCGGTTTCAAGAATACGGGATTGGAAAGAGCAGAGAGTTTGCG 479
Query 576 GAAAGATTTGGAGTGGTTCAAGGAACAAGGTTATGAGATTCCAGAGCCAATGGCTCCTGG 635
||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 480 GAAGGATTTGGAATGGTTCAAGGAACAAGGTTATGAAATTCCAGAGCCGATGGCTCCTGG 539
Query 636 TAAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAATGATCCTCAAGCATTCATTTG 695
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TAAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAACGATCCTCAAGCATTCATTTG 599
Query 696 TCACTTCTACAACATTTACTTTGCTCATAGCGCCGGTGGCCAGATGATTGGAACAAAGGT 755
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 600 TCACTTCTACAACATTTACTTTGCTCATAGTGCCGGTGGCCAAATGATTGGAACTAAGGT 659
Query 756 ATCTAAGAAGATACTAGATAATAAAGAACTCGAGTTCTATAAATGGGACGGTCAACTTTC 815
|||| |||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 660 ATCTGAGAAGATACTCGATGATAAAGAACTCGAGTTCTATAATTGGGACGGTCATCTTTC 719
Query 816 TCAGTTGTTGCAAAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGTGGTGGACAAGAGA 875
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 TCAATTGTTGCAGAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGTGTTGGACAAGAGA 779
Query 876 AGAAAAGAGTCATTGCTTGGAAGAGACTGAGAAATCGTTTAAGTTTTCAGGGGAGATTCT 935
||| |||| |||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 780 AGAGAAGAATCATTGTTTGGAAGAGACAGAGAAATCGTTCAAGTTTTCCGGGGAGATTCT 839
Query 936 TCGACTCATATTGTCCTGA 954
||| || ||||||||||||
Sbjct 840 TCGTCTTATATTGTCCTGA 858
> Ahg481532 jgi|Araly1|481532|fgenesh2_kg.4__592__AT2G26670.1
Length=1112
Score = 634 bits (343), Expect = 0.0
Identities = 576/687 (84%), Gaps = 22/687 (3%)
Strand=Plus/Plus
Query 284 CGGAGAAGCAACAA-AAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGA 342
||||||||| | || |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 271 CGGAGAAGC-AGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGG 329
Query 343 TTCGTGGCGATGAGATTGCATACGAAAGATCAAGC-AAGGGAAGGAGAAAAAGA-ATCTA 400
|| ||||| |||||| | ||||||||||||||||| || |||||| || ||||| | |||
Sbjct 330 TTTGTGGCTATGAGACTACATACGAAAGATCAAGCTAA-GGAAGGTGAGAAAGAGA-CTA 387
Query 401 GATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAGCCGACTGTGGAAGGATACTTACA-T 459
|||| |||||| |||| ||||| |||||||| |||||||| ||||| ||||| |
Sbjct 388 AATCTATTGAGGAACGTCCCGTGGCTAAATGGGAACCGACTGTTGAAGGTTACTT-GAGG 446
Query 460 TTTCTTGTGGATAGTAAGTTGGTTTACGACACGCTTGAAGGGATCATTGATGGA-TCCAA 518
||||||||||| ||||| |||||||| || || |||||| ||| ||| | || ||| |
Sbjct 447 TTTCTTGTGGACAGTAAATTGGTTTATGATACTCTTGAACAGATTATTCA-AGATTCCGA 505
Query 519 TTTCCCAACTTATGCTGGTTTCAAGAACACGGGATTAGAAAGAGCAGAG-AGTTTGCGGA 577
||||||||||||||| | |||||||||||||| | ||||| || ||| | || || |
Sbjct 506 TTTCCCAACTTATGCCGAATTCAAGAACACGGGGCTGGAAAGGGCGGAGAAATTGGC-CA 564
Query 578 AAGATTTGGAGTGGTTCAAGGAACAAGGTTATGAGATTCCAGAGCCAA-TGGCTCCTGGT 636
|||||||||||||||||||||||||| || ||||||||||| |||| | |||||||||
Sbjct 565 CGGATTTGGAGTGGTTCAAGGAACAAGGCTACGAGATTCCAGAACCAACT-GCTCCTGGT 623
Query 637 AAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAATGATCCTCAAGCATTCATTTGT 696
|||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 624 AAAACATATTCTCAGTATTTAAGGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGT 683
Query 697 CACTTCTACAACATTTACTTTGCTCATAGCGCCGGTGGCCAGA-TGATTGGAACAAAGGT 755
|||||||||||||| ||||| || ||||| || ||||| | || ||||||| | ||||||
Sbjct 684 CACTTCTACAACATCTACTTCGCCCATAGTGCTGGTGGAC-GAATGATTGGCAGAAAGGT 742
Query 756 ATCTAAGAAGA-TACTAGATAATAAAGAACTCGAGTTCTATAAATGGGACGGTC-AACTT 813
| || ||| || |||| || |||| ||||||||||||||| ||||||||||| | ||||
Sbjct 743 AGCTGAGA-GAATACTTGACAATAGAGAACTCGAGTTCTACAAATGGGACGG-CGAACTA 800
Query 814 TCTCAGTTGTTGCAAAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGTG-GTGGACAAG 872
|| || |||||||| || || ||| | ||||||||||||||||| ||| | |||||| ||
Sbjct 801 TCCCAATTGTTGCAGAACGTTAGGGAGAAACTGAACAAAGTTGCCGAG-GAGTGGACGAG 859
Query 873 AGAAGAAAAGAGTCATTGCTTGGAAGAGACTGAGAAATCGTTTAAGTTTTCAGGGGAGAT 932
||||||||||| |||||| ||||||||||| ||||||||||| |||| ||| || || ||
Sbjct 860 AGAAGAAAAGAATCATTGTTTGGAAGAGACGGAGAAATCGTTCAAGTATTCTGGTGAAAT 919
Query 933 TCTTCGACTCATATTGTCCTGATTTGA 959
||||| || |||||||||||||||||
Sbjct 920 ACTTCGTCTGATATTGTCCTGATTTGA 946
> Ahg475446 jgi|Araly1|475446|fgenesh2_kg.2__576__AT1G58300.1
Length=876
Score = 473 bits (256), Expect = 9e-133
Identities = 530/656 (81%), Gaps = 43/656 (7%)
Strand=Plus/Plus
Query 299 AGAA-GTATCCAGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGATTCGTGGCGATGAGA 357
|||| |||||| ||||| ||||||| ||||||||||||||||| ||||||| ||||| |
Sbjct 232 AGAAGGTATCCTGGAGAGCCAAAGGGGTTTGTGGAGGAGATGAGGTTCGTGGTGATGAAA 291
Query 358 TTGCATACGAAAGATCAAGCAAGGGAAGGAGAAAAAGAATCTAGATCTCCAGAGGAAGGT 417
|||| ||| |||||| | || ||| || |||| || | || ||| | | |||
Sbjct 292 ATGCACCCGAGAGATCAGGTAA---AAGAAGGAAAA-AA--T-GA-GTCC--A--ACGGT 339
Query 418 CCGGTGGCGAA-ATGGGA-GCCGACTGTGGAAGGATACTT-ACATTTTCTTGTGGATAGT 474
| || | || ||| | | || | ||||| ||||| | | ||||| |||||||||
Sbjct 340 CTTGTATC-AACTTGGAATTTC-ACAATCGAAGGGTACTTGA-AGTTTCTCGTGGATAGT 396
Query 475 AAG-TTG-GTTTACGACACGCTTGAAGGGATCATTGATGGATCCAATTTCCCAA-CTTAT 531
||| ||| |||| || ||||||||| |||| ||| | | ||| | | | |||| |||||
Sbjct 397 AAGCTTGTGTTT--GAGACGCTTGAACGGATTATTAACGAATCTACTCT-CCAAGCTTAT 453
Query 532 GCTGGTTTCAAGAACAC-GGGATTAGAAA-GAGCAGAGAGTTTGCGGAAAGATTTGGAGT 589
|| || |||| ||||| ||| || |||| || |||||| |||| | | ||||||||||
Sbjct 454 GCCGGGCTCAAAAACACAGGG-TTGGAAAGGA-CAGAGAATTTGAGTAGGGATTTGGAGT 511
Query 590 GGTTCAAGGAACAAGGTTATGAGATTCCAGAGCCAATGGCTCCTGGTAAAACATATTCTG 649
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 512 GGTTCAAGGAACAAGGTTACGAGATTCCAGAGCCAATGGCTCCTGGTAAAATATATTCTC 571
Query 650 AGTATTTAAAAGATT-TAGCAGAGAATGATCCTCAAGCATTCATTTGTCACTTCTACAAC 708
|| ||||||| || | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 572 AGCATTTAAA-GAATATAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAAC 630
Query 709 ATTTACTTTGCTCATAGCGCCGGTGGCCAGA-TGATT-GGAACAAAGGTAT-CTAAGAAG 765
|| |||||||| ||||| || ||||| | || ||||| ||| ||||||| | || |||||
Sbjct 631 ATCTACTTTGCACATAGTGCTGGTGGTC-GAATGATTAGGA-CAAAGGT-TGCTGAGAAG 687
Query 766 ATACTAGATAATAAAGAACTCGAGTTCTATAAATGGGACGGTCAACTTTCTC-AGTTGTT 824
||||| || |||||||||||||||||||| |||||||| || |||||||| | | |||||
Sbjct 688 ATACTCGACAATAAAGAACTCGAGTTCTACAAATGGGATGGCCAACTTTC-CGAATTGTT 746
Query 825 GCAAAATGTGAG-GCAAAAACTGAACAAAGTTGCAGAGTGGTGGACAAGAGAAGAAAAGA 883
|||||| ||||| | || || |||||||||| || |||| ||||||||||||||| ||||
Sbjct 747 GCAAAACGTGAGTG-AAGAATTGAACAAAGTGGCTGAGTTGTGGACAAGAGAAGAGAAGA 805
Query 884 GTCATTGCTTGGAAGAGACTGAGAAATCGTTTAAGTTTTCAG-GGGAGATTCTTCG 938
|||||| |||| |||||| |||| |||||| ||||||| | |||||||| ||||
Sbjct 806 ATCATTGTTTGGCAGAGACAGAGATATCGTTCAAGTTTT-ATTGGGAGATTTTTCG 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5