BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69730.1
Length=2450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476104 jgi|Araly1|476104|fgenesh2_kg.2__1234__AT1G69730.1 1441 0.0
Ahg906760 jgi|Araly1|906760|Al_scaffold_0003_3888 922 0.0
Ahg909607 jgi|Araly1|909607|Al_scaffold_0002_2688 800 0.0
Ahg931809 jgi|Araly1|931809|scaffold_304266.1 494 2e-138
> Ahg476104 jgi|Araly1|476104|fgenesh2_kg.2__1234__AT1G69730.1
Length=2324
Score = 1441 bits (780), Expect = 0.0
Identities = 886/937 (95%), Gaps = 7/937 (1%)
Strand=Plus/Plus
Query 1462 TTCATCAATGAGGTTGTCATTCTTTCACAGATCAACCACAGGAACATCGTGAAACTCTTG 1521
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1393 TTCATCAATGAGGTTGTCATTCTTTCGCAGATCAACCACAGGAACATCGTGAAACTCTTG 1452
Query 1522 GGATGTTGCCTTGAGACAAAAGTCCCTGTTCTCGTCTACGAGTTTATTCCTAATGGTAAC 1581
||||||||||| |||||||| || || |||||||||||||| | ||||||||||||||||
Sbjct 1453 GGATGTTGCCTCGAGACAAATGTTCCAGTTCTCGTCTACGAATATATTCCTAATGGTAAC 1512
Query 1582 CTTTTCGAACATCTTCATGATGAGTTTGATGAAAACATTATGGCTAC-TTGGAATATACG 1640
|||||||||||||| ||||||||||||||||| ||||| |||||||| | |||| || ||
Sbjct 1513 CTTTTCGAACATCTACATGATGAGTTTGATGATAACATGATGGCTACATGGGAA-ATGCG 1571
Query 1641 TCTCCGCATTGCTATAGATATTGCAGGAGCTCTCTCATACTTGCACTCGTCTGCATCGTC 1700
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1572 TCTCCGCATTGCTATTGATATTGCAGGAGCTCTCTCATACTTGCACTCGTCTGCAACGTC 1631
Query 1701 TCCAATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATATCGAGC 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 TCCAATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATATCGAGC 1691
Query 1761 CAAGGTGTCTGATTTTGGAACGTCAAGAACGGTGACAGTGGATCATACCCACTTGACAAC 1820
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1692 AAAGGTATCTGATTTTGGAACGTCAAGAACGGTAACAGTGGATCATACCCACTTGACAAC 1751
Query 1821 GGTAGTTTCAGGTACGGTGGGATATATGGATCCAGAGTACTTTCAGTCTAGCCAATTCAC 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 GGTAGTTTCAGGTACGGTGGGATATATGGATCCAGAGTACTTTCAGTCTAGCCAATTCAC 1811
Query 1881 AGACAAAAGTGATGTCTATAGCTTCGGGGTCGTGCTAGTGGAGCTAATAACTGGAGAAAA 1940
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1812 CGACAAAAGTGATGTCTACAGCTTCGGGGTTGTGCTAGTGGAGCTAATAACTGGAGAAAA 1871
Query 1941 GTCGATTTCTTTCTTGAGGTCTCAAGAAAACAGGACATTGGCAACTTATTTCATTCTTGC 2000
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 GTCGATTTCTTTTTTGCGGTCTCAAGAAAACAGGACATTGGCAACTTATTTCATTCTTGC 1931
Query 2001 AATGAAAGAAAACAAACTCTTCGATATTATCGATGCTCGAATAAGAGATGGTTGCATGTT 2060
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1932 AATGAAAGAAAACAAACTCTTCGATATTATCGATCCTCGTATAAGAGATGGTTGCATGTT 1991
Query 2061 GAGTCAAGTGACTGCAACGGCAAAAGTTGCAAGGAAGTGTCTCAATCTGAAAGGGAGAAA 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1992 GAGTCAAGTGACTGCAACGGCAAAAGTTGCAAGGAAGTGTCTCAATCTGAAAGGGAGGAA 2051
Query 2121 ACGACCAAGCATGAGAGAAGTGTCGATGGAGCTTGATAGTA-TTCGTATGCCTTGTGGAG 2179
||||||||||||||||||||| || ||||||||||||| || |||| ||| ||| |||||
Sbjct 2052 ACGACCAAGCATGAGAGAAGTATCCATGGAGCTTGATA-TAATTCGAATGTCTTCTGGAG 2110
Query 2180 ATATGCAACTGCAAGAATGTGTTAGCGAAAACGAGGAAGGGGAAGAACAAAACAAAGGAC 2239
|||||||| ||||||| | |||||||||||||||||||| ||||||| |||||||||||
Sbjct 2111 ATATGCAAATGCAAGAGTATGTTAGCGAAAACGAGGAAGAGGAAGAAAAAAACAAAGGAG 2170
Query 2240 TTGTGGAAGATATCATGAGGGCAGAATCAAGGAGCAAAGAGTTTGTTACCGCTCCAGCTT 2299
|||||||||||||||| |||| ||||||||||||||| ||| ||||||| ||||||||||
Sbjct 2171 TTGTGGAAGATATCATAAGGGTAGAATCAAGGAGCAATGAGGTTGTTACTGCTCCAGCTT 2230
Query 2300 CTCACTACAATAATATTGCTGCTGCCTCATCTTCTTCGTGGTCAGATGTTGAACCATTGT 2359
|||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2231 CTCAATACAATA-TA--GCTGCTGCCTCATCTTCTTCGTGGTCAGATGTTGAACCATTGT 2287
Query 2360 TTCCTCTTCAAACACGGTAAAACTTCATCTTCGAACA 2396
||||||||||||||||||||||||||| ||| |||||
Sbjct 2288 TTCCTCTTCAAACACGGTAAAACTTCAGCTTTGAACA 2324
Score = 1179 bits (638), Expect = 0.0
Identities = 1132/1359 (83%), Gaps = 80/1359 (6%)
Strand=Plus/Plus
Query 109 GGAATCAAGATCCCGTACCCCTTTGGAATGGGAAAGGGTTGTTATCTGGAGAAGTGGTAC 168
|||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 73 GGAATCGAGATCGTGTACCCCTTTGGAGTCGGAAAGGGTTGTTATCTGGAGAAGTGGTAC 132
Query 169 GAAATTAC-T-T-GTAATACCTCTACTTCTGGAAAGCTCGTCCCTTATCTTTCCGTGATC 225
||| |||| | | |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 133 GAAGTTACATGTAATAATACCTCTACTTCTGGAAAGCTCGTCCCTTTTCTTTCCGTAATC 192
Query 226 AACAAGGAAGTTGTGGGTATCTCTCTTCCGACTGAAGGC-AG-GGGTT-CTAGATATAAC 282
||||||||||||||| | |||||| ||||||| | || | || || || | |
Sbjct 193 AACAAGGAAGTTGTGAATTTCTCTCCTCCGACT-CA-GCTCGAGGATTATTA-CGAGCCC 249
Query 283 AATCCATACCAGTCCGTTAACATTAAAAACCCAATAGCCTCAA-AGGAGTGCTCAAGCAA 341
||| || | | |||| ||| |||||||||||| | |||| ||| ||||||||| |
Sbjct 250 TTTCCGCACGGGACAGTTAGCATAAAAAACCCAATAACTTCAATGGGA-TGCTCAAGCGA 308
Query 342 TGGAGAAGAGCTTGGATCACTTTTGAATTTGACGGGTACCCCTTTTTATGTTAGCCAGCA 401
| |||||||||||||||||||||||||||||| | ||||||||| || ||||| ||| |
Sbjct 309 CGAAGAAGAGCTTGGATCACTTTTGAATTTGACTGATACCCCTTTCTACGTTAG-CAGGA 367
Query 402 -CAATGA-ACTGGTAGCG-GTTGGTTGCAACAACACGGCATCGCTGACAAATGT-GAAGC 457
||| | |||| ||| | ||||||||||| |||||||||||| |||||||||| | |||
Sbjct 368 GAAAT-ACACTGATAG-GAGTTGGTTGCAATAACACGGCATCGTTGACAAATGTCG-AGC 424
Query 458 CAAGCATAGTGCAATGCACATCAAGCTGCAGCACAAAACCCCATACGCATATC-AAAGAT 516
||||||||||| ||||| ||| || ||| ||||| | |||| ||||| | | | ||||
Sbjct 425 CAAGCATAGTGGGATGCAAATCTAGTTGCGGCACACATCCCCTTACGCCT-GCTAGAGAT 483
Query 517 TATCTTGCAGTACTAAATTGTCAGAATTACAATGGCTACGAGAAGAATTGTAATGAGGAC 576
||||||||| || | | |||| | || | |||||| || || ||||||| ||
Sbjct 484 TATCTTGCACTAGTCAGTTGT--G-ATGAGTATGGCTTTGACCAGCGTTGTAAT---GA- 536
Query 577 AGCAGTATGGATGAAAGCATTATGGATGAAACAAGCTGCAATGGTATTGGATGCTGCAAT 636
| || | || | |||||||| ||| ||||||||||||||||||| |||||||| |
Sbjct 537 A--AG-A-CGA-G---GCATTATGAATGGAACAAGCTGCAATGGTATTAGATGCTGCCAG 588
Query 637 GCATACATGCGCGGCGGTAGTATTCAACAGATTGTTGGTGTCACAATAGAAAACACCATA 696
||| |||| | | || |||||| |||||||||||||||||| |||||||| |||||||
Sbjct 589 GCAAACAT--G-GTCGACAGTATTGAACAGATTGTTGGTGTCAGAATAGAAAGCACCATA 645
Query 697 ACGAGAGGGTGCAAAGTTGCCTTCTTGACAAACAAGGCAGAATATTTGTCTAATAAATCT 756
||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 646 ACGAGAGGGTGCAAAGTTGCCTTCTTGACAAACAAGGCATCCTTTTTGTCTAGTAAATCT 705
Query 757 GATCCGCAAAAGCTTCATGCTAGAGGATACAGTACGGTCGAGCTAGGATGGTTTATCCAT 816
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 706 GATCCGCAAGAGCTTCATGCTAGAGGATACAGTACGGTTGAGCTAGGATGGTTTATCCAT 765
Query 817 ACGACGAATCATTCGTTTATAAAGTCTCTGGGATGCTATAG---TGTAAAAGAGTACAAC 873
|| ||||||||||| ||| |||||||||||||||||||||| ||||| ||||| ||
Sbjct 766 ACTACGAATCATTCATTTGTAAAGTCTCTGGGATGCTATAGTACTGTAATAGAGT---AC 822
Query 874 AATGAAAGATACACTAGT-ACCCAGAGAA-GAATTAACATAACAAGTTGTATATGCGATG 931
||||| | | | | || |||| |||| ||| | || || ||||||| |||||||
Sbjct 823 -ATGAATG-T--ATTCGTCACCCCTAGAAGGAA-T-AC--AAGAAGTTGTGTATGCGA-C 873
Query 932 A-CAATGCTTATCTAAGCTATGCAAGATGCTCATGCACTAGGGGTTTCCAAGGCAACCCA 990
| ||| ||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 874 AGTAATACTTATCTAAGCTATGCAAGCTGCTCATGCACTAGAGGTTTCGAAGGCAACCCA 933
Query 991 TACCGTTTAGGCGGATGCAAAGATATCAATGAATG---TAAAGAAGAA---GAGGGCA-T 1043
||||| || ||||||||||||||||| |||||||| ||| ||||| || || | |
Sbjct 934 TACCGATTGGGCGGATGCAAAGATATTAATGAATGCCAAAAAAAAGAAGTTGATGGAACT 993
Query 1044 --GACTTACTGTGGGACCA-ACAAATGTGTCAATTTGCAAGGACACTTTAAATGTGTGT- 1099
||||||||| | | | || || ||||||||||| ||| ||| | | |||||||
Sbjct 994 CACACTTACTGTAGTA-GAGGCACTTGCGTCAATTTGCAGGGAGACTATCATTGTGTGTA 1052
Query 1100 -----A-CA-AC--A--ATCATCGGCCACTTGCTATAGGGCTTGGTGCTAGTTTTGGCTC 1148
| || || | ||||||||||||| ||||||||||||||| | ||||| |||||
Sbjct 1053 CACAAATCACACAAATCATCATCGGCCACTGGCTATAGGGCTTGGTTCGAGTTTCGGCTC 1112
Query 1149 ATTGATCTTTGTTGTTGGAATATACTTGTTATACAAATTTATTAAAAAGCAAAGGAAGTT 1208
|||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1113 ATTGATCTTTGTTGGTGGAATATACTGGTTATACAAAATTATTAAAAAGCAAAGGAAGTT 1172
Query 1209 AAACCAAAAGAAGAAGTTCTTCAAGCGTAATGGTGGTCTATTGTTGCAACAACAATTGAT 1268
|||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1173 AAACCAAAAGAAGAAGTTTTTCAAACGTAATGGGGGTCTATTGTTGCAACAACAATTGAC 1232
Query 1269 TTCAACAGTAGGCATGGTCGAAAAGACAATAGTGTTCAGTTCGCGAGAGTTGGAGAAAGC 1328
|||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1233 TTCAACAGAAGGAATGGTCGAGAAGACAAAAGTGTTCAGTTCGCGAGAGTTGGAGAAAGC 1292
Query 1329 TACTGAAAACTTCAGTTCAAACAGAATACTTGGCCAGGGTGGTCAAGGTACAGTGTACAA 1388
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1293 TACCGAAAACTTCAGTTCAAACAGAATACTTGGCCAGGGTGGTCAAGGTACTGTGTACAA 1352
Query 1389 GGGAATGCTTGTCGATGGAAGAATCGTTGCAGTAAAAAA 1427
|||||||||||||||||||||||| ||||||||||||||
Sbjct 1353 GGGAATGCTTGTCGATGGAAGAATTGTTGCAGTAAAAAA 1391
> Ahg906760 jgi|Araly1|906760|Al_scaffold_0003_3888
Length=1959
Score = 922 bits (499), Expect = 0.0
Identities = 665/747 (89%), Gaps = 4/747 (1%)
Strand=Plus/Plus
Query 1081 GGACACTTTAAATGTGTGTACAACAATCATCGGCCACTTGCTATAGGGCTTGGTGCTAGT 1140
||||||| | |||||| |||||| || ||||||||||| ||||||||| ||||| | |||
Sbjct 961 GGACACTATGAATGTGAGTACAAAAAACATCGGCCACTCGCTATAGGGTTTGGTTCGAGT 1020
Query 1141 TTTGGCTCATTGATCTTTGTTGTTGGAATATACTTGTTATACAAATTTATTAAAAAGCAA 1200
|||||||||||||| ||| ||||||||||||||| ||||||||||||||| | |||||||
Sbjct 1021 TTTGGCTCATTGATTTTTATTGTTGGAATATACTGGTTATACAAATTTATGAGAAAGCAA 1080
Query 1201 AGGAAGTTAAACCAAAAGAAGAAGTTCTTCAAGCGTAATGGTGGTCTATTGTTGCAACAA 1260
| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 AAGAGGTTAAAGCAAAAGAAGAAGTTCTTCAAGCGTAATGGGGGTCTATTGTTGCAACAA 1140
Query 1261 CAATTGATTTCAACAGTAGGCATGGTCGAAAAGACAATAGTGTTCAGTTCGCGAGAGTTG 1320
||||||| | |||||| ||||| ||||| ||||||| |||||||| |||| ||||||||
Sbjct 1141 CAATTGACTGCAACAGAAGGCAACGTCGAGAAGACAAAAGTGTTCACTTCGAGAGAGTTG 1200
Query 1321 GAGAAAGCTACTGAAAAC-TTCAGTTCAAACAGAATACTTGGCCAGGGTGGTCAAGGTAC 1379
|| ||||||||||||||| || | || ||| ||||||||||| |||||||||||||||||
Sbjct 1201 GAAAAAGCTACTGAAAACTTTAACTT-AAATAGAATACTTGGTCAGGGTGGTCAAGGTAC 1259
Query 1380 AGTGTACAAGGGAATGCTTGTCGATGGAAGAATCGTTGCAGTAAAAAAGTCCAAAGTCGT 1439
|||||||| |||||||||| ||| || ||||| || ||||| || ||||||||||||||
Sbjct 1260 TGTGTACAAAGGAATGCTTGGCGACGGTAGAATAGTAGCAGTGAAGAAGTCCAAAGTCGT 1319
Query 1440 GGACGAAGACAAGCTAGAAGAGTTCATCAATGAGGTTGTCATTCTTTCACAGATCAACCA 1499
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1320 GGACGAAGACAAGCTAGAAGAGTTCATCAATGAGGTTGTCATTCTTTCGCAGATCAACCA 1379
Query 1500 CAGGAACATCGTGAAACTCTTGGGATGTTGCCTTGAGACAAAAGTCCCTGTTCTCGTCTA 1559
||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1380 CAGAAACATTGTGAAACTCTTGGGCTGTTGCCTTGAGACAAATGTCCCAGTTCTGGTCTA 1439
Query 1560 CGAGTTTATTCCTAATGGTAACCTTTTCGAACATCTTCATGATGAGTTTGATGAAAACAT 1619
||||||||||||||||||||||||||| |||||||||||||| || || || || |||
Sbjct 1440 CGAGTTTATTCCTAATGGTAACCTTTTTGAACATCTTCATGAGGAATTGGAGGATTACAC 1499
Query 1620 TATGGCTACTT-GGAATATACGTCTCCGCATTGCTATAGATATTGCAGGAGCTCTCTCAT 1678
||| |||||| |||| | || |||||||||||| |||||||||||| |||||| || |
Sbjct 1500 GATGACTACTTGGGAA-GTGCGCCTCCGCATTGCTGTAGATATTGCAGAAGCTCTTTCTT 1558
Query 1679 ACTTGCACTCGTCTGCATCGTCTCCAATCTATCACAGAGACGTCAAGTCTACAAACATAA 1738
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ACTTGCACTCGGCTGCATCCTCTCCAATCTATCACAGAGACGTCAAGTCTACAAACATAA 1618
Query 1739 TGTTGGATGAGAAATATCGAGCCAAGGTGTCTGATTTTGGAACGTCAAGAACGGTGACAG 1798
|| ||||||| |||||||||||||| || |||||||||||||| |||||| | || || |
Sbjct 1619 TGCTGGATGAAAAATATCGAGCCAAAGTATCTGATTTTGGAACTTCAAGATCAGTAACGG 1678
Query 1799 TGGATCATACCCACTTGACAACGGTAG 1825
||||||| |||||||||||||| ||||
Sbjct 1679 TGGATCACACCCACTTGACAACAGTAG 1705
> Ahg909607 jgi|Araly1|909607|Al_scaffold_0002_2688
Length=1860
Score = 800 bits (433), Expect = 0.0
Identities = 744/894 (83%), Gaps = 22/894 (2%)
Strand=Plus/Plus
Query 1174 TTGTTATACAAATTTATTAAAAAGC-AAAG-GAAGTTAAAC-CAAAAGAAGAAGTTCTTC 1230
||||||| || |||||||| || || |||| | | | || | | ||| ||||| ||||||
Sbjct 685 TTGTTATTCATATTTATTAGAAGGCGAAAGCGGA-TCAATCGC-AAA-AAGAATTTCTTC 741
Query 1231 AAGCGTAATGGTGGTCTATTGTTGCAACAACAATTGATTTCAACAGTAGGCATGGTCGAA 1290
|| ||||| || ||||||||||| |||||||| || | |||||| | ||||| |||||
Sbjct 742 AAACGTAACGGAGGTCTATTGTTACAACAACAGTTAACTTCAACGGAAGGCACCGTCGAG 801
Query 1291 AAGACAATAGTGTTCAGTTCGCGAGAGTTGGAGAAAGCTACTGAAAACTTCAGTTCAAAC 1350
||||||| ||| || |||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 802 AAGACAAAAGTATTTAGTTCGAGGGAGTTGGAGAAAGCTACTGAAAACTTCAGTGAAAAC 861
Query 1351 AGAATACTTGGCCAGGGTGGTCAAGGTACAGTGTACAAGGGAATGCTT-GTCGATGGAAG 1409
||| | ||||| || ||||||||||| || ||||||||||||||| || |||||||| ||
Sbjct 862 AGAGTTCTTGGACAAGGTGGTCAAGGCACTGTGTACAAGGGAATG-TTGGTCGATGGTAG 920
Query 1410 AATCGTTGCAGT-AAAAAAGTCCAAAGTCGTGGACGAAGACAAGCTAGAAGAGTTCATCA 1468
|| || ||||| |||||| || ||| ||||||||||||||||| ||||||| ||||| |
Sbjct 921 CATTGTGGCAGTCAAAAAA-TCTAAAATCGTGGACGAAGACAAGTTAGAAGAATTCATAA 979
Query 1469 ATGAGGTTGTCATTCTTTCACAGATCAACCACAGGAACATCGTGAAACTCTTGGGATGTT 1528
||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||
Sbjct 980 ATGAGGTCGTCATTCTATCGCATATTAACCACAGGAACATCGTGAAACTCTTGGGATGTT 1039
Query 1529 GCCTTGAGACAAAAGTCCCTGTTCTCGTCTACGAGTTTATT-CCTAATGGTAACCTTTTC 1587
|||||||||| |||||||| |||| ||||||||||||||| || ||||| || ||||||
Sbjct 1040 GCCTTGAGACGGAAGTCCCTCTTCTGGTCTACGAGTTTATTTCC-AATGGAAATCTTTTC 1098
Query 1588 GAACATCTTCATGATGAGTT-TGATGAAAACATTATGGCTACTTGG-AATATACGTCTCC 1645
|| ||||| ||||| || | | ||| ||| ||||| |||||| || | ||||| |
Sbjct 1099 GAGCATCTCCATGACGAATCATC-TGATTACACGATGGCCACTTGGGAAG-TGCGTCTGC 1156
Query 1646 GCATTGCTATAGATATTGCAGGAGCTCTCTCATACTTGCACTC-GTCTGCATCGTCTCCA 1704
| || |||||||| ||||| |||||||| |||||| | ||||| | | |||||| ||||
Sbjct 1157 GAATGGCTATAGAGATTGCCGGAGCTCTTTCATACCTACACTCAGCC-GCATCGGCTCCC 1215
Query 1705 ATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATATCGAGCCAAG 1764
|| |||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 1216 ATTTATCACAGAGACATCAAATCTACAAACATAATGTTGGACGAGAAATATCGAGCTAAG 1275
Query 1765 GTGTCTGATTTTGGAACGTCAAGAACGGTGACAGTGGATCATACCCA-CTTGACAACGGT 1823
||||| |||||||| || ||||||||||| |||| |||||||||||| || |||||| |
Sbjct 1276 GTGTCCGATTTTGGTACTTCAAGAACGGTAACAGAGGATCATACCCATCT-GACAACACT 1334
Query 1824 AGTTTCAGGTACGGTGGGATATATGGATCCAGAGTACTTTC-AGTCTAGCCAATTCACAG 1882
||||||||||| | |||||| |||||||||| || |||| |||| ||||||||||| |
Sbjct 1335 GGTTTCAGGTACTGCAGGATATTTGGATCCAGAATA-TTTCCAGTCAAGCCAATTCACTG 1393
Query 1883 ACAAAAGTGATGTCTATAGCTTCGGGGTCGTGCTAGTGGAGCTAATAACTGGAGAAAAGT 1942
| || |||||||| ||||||||||| || ||| | ||||| || || || ||||||||
Sbjct 1394 ATAAGAGTGATGTGTATAGCTTCGGAGTTGTGTTGGTGGAACTCATCACAGGAGAAAAAC 1453
Query 1943 CGATTTCTTTCTTGAGGTCTCAAGAAAACAGGACATTGGCAACTTATTTCATTCTTGCAA 2002
||||||||||| | | ||||||||||||| ||||||||||||||||||| | || ||
Sbjct 1454 CGATTTCTTTCACGCGACCTCAAGAAAACAGAACATTGGCAACTTATTTCACTATTTCAG 1513
Query 2003 TGAAAGAAAACAAACTCTTCGATATTATCGATGCTCGAATAAGAGATGGTTGCA 2056
|||| ||||||| | || | ||||| |||||||||||||| ||||||| |||||
Sbjct 1514 TGAAGGAAAACAGAGTCGTGGATATCATCGATGCTCGAATCAGAGATGATTGCA 1567
Score = 84.2 bits (45), Expect = 4e-15
Identities = 59/65 (91%), Gaps = 3/65 (5%)
Strand=Plus/Plus
Query 2319 TGCTGCCTCATCTTCTTCGTGGTCAGATGTTGAACCATTGTTTCCT-CTTCAAACACGGT 2377
|||||| |||||||| |||||||||||||||||||||||||||||| || || ||||| |
Sbjct 1773 TGCTGCATCATCTTCATCGTGGTCAGATGTTGAACCATTGTTTCCTTCT-CAGACACG-T 1830
Query 2378 AAAAC 2382
|||||
Sbjct 1831 AAAAC 1835
> Ahg931809 jgi|Araly1|931809|scaffold_304266.1
Length=1836
Score = 494 bits (267), Expect = 2e-138
Identities = 648/823 (79%), Gaps = 62/823 (8%)
Strand=Plus/Plus
Query 613 TGCAAT-GGTATTGGATGCTGCAATGCATACATGCGCGGCGGT-AGTATTCAACAGATTG 670
|||||| ||| || ||||||| | ||| |||||| | | | || |||||||||||||
Sbjct 618 TGCAATGGGT-TTCAATGCTGCGAGGCAAACATGC-CTAC--TCAG-ATTCAACAGATTG 672
Query 671 TTGGTGTCACAATAGAAAACACCATAACGA---GAGGGTGCAAAGTTGCCTTCTTGACAA 727
||||||| | ||| || | ||||| ||| | |||||||||||||||||||||| |||
Sbjct 673 TTGGTGTGAGAATTGATAGCACCACAACAACCGGAGGGTGCAAAGTTGCCTTCTTAACAG 732
Query 728 ACAAGGCAGAATATTTGTCT-AATAAATCTGATCCGCAAAAG-CTTCATGCTAGAGGATA 785
|| ||| | | | ||| | | ||| ||||||||| ||| | |||||||||| |||| |
Sbjct 733 ACGAGGAATACTCTTT-TTTAAATGGTTCTGATCCG-AAACGACTTCATGCTAAAGGA-A 789
Query 786 CAGT--ACGGTCGAGCTAGGATGGTTTATCCATACGACGAATCATTCGTTTATAAAGTCT 843
|| | || || |||||||||||||| |||||||| |||||| ||||| | || | |||
Sbjct 790 CA-TCAACCGTTGAGCTAGGATGGTTCATCCATACTTCGAATCGTTCGTATGTAGATTCT 848
Query 844 CTGGGATGCTATAG-TGT-AAA--A-GAGTA--C--AACAA-TGAAAGATACACTAGTAC 893
| |||||| | || | | ||| | | || | || || ||| | | | || | |
Sbjct 849 TTAGGATGCCAAAGTTATGAAACTATGTCTAGGCTTAA-AAGGGAAGGCT--A-TAATGC 904
Query 894 CCA-GAGAAG-AATTAACATAACAAGTTGTATATGCGA-TGACAATGCTTATCTAAGCTA 950
| || ||| | || || ||||||| | ||||| | | |||||||||||||||||
Sbjct 905 TTATGA-AAGTACTT-TTGGAATAAGTTGTTTTTGCGACT-ATAATGCTTATCTAAGCTA 961
Query 951 TGCAAGATGCTCATGCACTAG-GGGTTTCCAAGGCAACCCATA-C--C---GTTTAGGCG 1003
||||||||||||||||| | | |||| ||||||||||||||| | | | |||||
Sbjct 962 TGCAAGATGCTCATGCAAT-GACGGTTACCAAGGCAACCCATACCTTCAAGGAGGAGGCG 1020
Query 1004 GATGCAAAGATATCAATGAATG--TA-AAGAA-GA--A-GA-GGGCATGACTTACTG--T 1053
||||||||||| | |||||||| || || || || | || || || || | || |
Sbjct 1021 GATGCAAAGATGTTAATGAATGTCTAGAA-AAGGACTATGATGGAAATTAC-AAATGTAT 1078
Query 1054 GGGACCAACAAATGTGTCAATTTGCAAGGACACTTTAAATGTGTGTACAACAATCATCGG 1113
|||| || |||||| ||||||| ||||||| | |||||| |||||| || ||||||
Sbjct 1079 GGGAGGGAC--GTGTGTCGATTTGCAGGGACACTATGAATGTGAGTACAAAAAACATCGG 1136
Query 1114 CCACTTGCTATAGGGCTTGGTGCTAGTTTTGGCTCATTGATCTTTGTTGTTGGAATATAC 1173
||||| ||||||||| ||||| | ||||||||||||||||| ||| ||||||||||||||
Sbjct 1137 CCACTCGCTATAGGGTTTGGTTCGAGTTTTGGCTCATTGATTTTTATTGTTGGAATATAC 1196
Query 1174 TTGTTATACAAATTTATTAAAAAGCAAAGGAAGTTAAACCAAAAGAAGAAGTTCTTCAAG 1233
| ||||||||||||||| | |||||||| || |||||| |||||||||||||||||||||
Sbjct 1197 TGGTTATACAAATTTATGAGAAAGCAAAAGAGGTTAAAGCAAAAGAAGAAGTTCTTCAAG 1256
Query 1234 CGTAATGGTGGTCTATTGTTGCAACAACAATTGATTTCAACAGTAGGCATGGTCGAAAAG 1293
|||||||| ||||||||||||||||||||||||| | |||||| ||||| ||||| |||
Sbjct 1257 CGTAATGGGGGTCTATTGTTGCAACAACAATTGACTGCAACAGAAGGCAACGTCGAGAAG 1316
Query 1294 ACAATAGTGTTCAGTTCGCGAGAGTTGGAGAAAGCTACTGAAAACTTCAG-TTCAAACAG 1352
|||| |||||||| |||| |||||||||| ||||||||||||||||| | || ||| ||
Sbjct 1317 ACAAAAGTGTTCACTTCGAGAGAGTTGGAAAAAGCTACTGAAAACTTTAACTT-AAATAG 1375
Query 1353 AATACTTGGCCAGGGTGGTCAAGGTACAGTGTACAAGGGAATG 1395
||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1376 AATACTTGGTCAGGGTGGTCAAGGTACTGTGTACAAAGGAATG 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92330753880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5