BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69730.1 Length=2450 Score E Sequences producing significant alignments: (Bits) Value Ahg476104 jgi|Araly1|476104|fgenesh2_kg.2__1234__AT1G69730.1 1441 0.0 Ahg906760 jgi|Araly1|906760|Al_scaffold_0003_3888 922 0.0 Ahg909607 jgi|Araly1|909607|Al_scaffold_0002_2688 800 0.0 Ahg931809 jgi|Araly1|931809|scaffold_304266.1 494 2e-138 > Ahg476104 jgi|Araly1|476104|fgenesh2_kg.2__1234__AT1G69730.1 Length=2324 Score = 1441 bits (780), Expect = 0.0 Identities = 886/937 (95%), Gaps = 7/937 (1%) Strand=Plus/Plus Query 1462 TTCATCAATGAGGTTGTCATTCTTTCACAGATCAACCACAGGAACATCGTGAAACTCTTG 1521 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1393 TTCATCAATGAGGTTGTCATTCTTTCGCAGATCAACCACAGGAACATCGTGAAACTCTTG 1452 Query 1522 GGATGTTGCCTTGAGACAAAAGTCCCTGTTCTCGTCTACGAGTTTATTCCTAATGGTAAC 1581 ||||||||||| |||||||| || || |||||||||||||| | |||||||||||||||| Sbjct 1453 GGATGTTGCCTCGAGACAAATGTTCCAGTTCTCGTCTACGAATATATTCCTAATGGTAAC 1512 Query 1582 CTTTTCGAACATCTTCATGATGAGTTTGATGAAAACATTATGGCTAC-TTGGAATATACG 1640 |||||||||||||| ||||||||||||||||| ||||| |||||||| | |||| || || Sbjct 1513 CTTTTCGAACATCTACATGATGAGTTTGATGATAACATGATGGCTACATGGGAA-ATGCG 1571 Query 1641 TCTCCGCATTGCTATAGATATTGCAGGAGCTCTCTCATACTTGCACTCGTCTGCATCGTC 1700 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1572 TCTCCGCATTGCTATTGATATTGCAGGAGCTCTCTCATACTTGCACTCGTCTGCAACGTC 1631 Query 1701 TCCAATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATATCGAGC 1760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1632 TCCAATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATATCGAGC 1691 Query 1761 CAAGGTGTCTGATTTTGGAACGTCAAGAACGGTGACAGTGGATCATACCCACTTGACAAC 1820 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1692 AAAGGTATCTGATTTTGGAACGTCAAGAACGGTAACAGTGGATCATACCCACTTGACAAC 1751 Query 1821 GGTAGTTTCAGGTACGGTGGGATATATGGATCCAGAGTACTTTCAGTCTAGCCAATTCAC 1880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1752 GGTAGTTTCAGGTACGGTGGGATATATGGATCCAGAGTACTTTCAGTCTAGCCAATTCAC 1811 Query 1881 AGACAAAAGTGATGTCTATAGCTTCGGGGTCGTGCTAGTGGAGCTAATAACTGGAGAAAA 1940 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1812 CGACAAAAGTGATGTCTACAGCTTCGGGGTTGTGCTAGTGGAGCTAATAACTGGAGAAAA 1871 Query 1941 GTCGATTTCTTTCTTGAGGTCTCAAGAAAACAGGACATTGGCAACTTATTTCATTCTTGC 2000 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1872 GTCGATTTCTTTTTTGCGGTCTCAAGAAAACAGGACATTGGCAACTTATTTCATTCTTGC 1931 Query 2001 AATGAAAGAAAACAAACTCTTCGATATTATCGATGCTCGAATAAGAGATGGTTGCATGTT 2060 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 1932 AATGAAAGAAAACAAACTCTTCGATATTATCGATCCTCGTATAAGAGATGGTTGCATGTT 1991 Query 2061 GAGTCAAGTGACTGCAACGGCAAAAGTTGCAAGGAAGTGTCTCAATCTGAAAGGGAGAAA 2120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1992 GAGTCAAGTGACTGCAACGGCAAAAGTTGCAAGGAAGTGTCTCAATCTGAAAGGGAGGAA 2051 Query 2121 ACGACCAAGCATGAGAGAAGTGTCGATGGAGCTTGATAGTA-TTCGTATGCCTTGTGGAG 2179 ||||||||||||||||||||| || ||||||||||||| || |||| ||| ||| ||||| Sbjct 2052 ACGACCAAGCATGAGAGAAGTATCCATGGAGCTTGATA-TAATTCGAATGTCTTCTGGAG 2110 Query 2180 ATATGCAACTGCAAGAATGTGTTAGCGAAAACGAGGAAGGGGAAGAACAAAACAAAGGAC 2239 |||||||| ||||||| | |||||||||||||||||||| ||||||| ||||||||||| Sbjct 2111 ATATGCAAATGCAAGAGTATGTTAGCGAAAACGAGGAAGAGGAAGAAAAAAACAAAGGAG 2170 Query 2240 TTGTGGAAGATATCATGAGGGCAGAATCAAGGAGCAAAGAGTTTGTTACCGCTCCAGCTT 2299 |||||||||||||||| |||| ||||||||||||||| ||| ||||||| |||||||||| Sbjct 2171 TTGTGGAAGATATCATAAGGGTAGAATCAAGGAGCAATGAGGTTGTTACTGCTCCAGCTT 2230 Query 2300 CTCACTACAATAATATTGCTGCTGCCTCATCTTCTTCGTGGTCAGATGTTGAACCATTGT 2359 |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2231 CTCAATACAATA-TA--GCTGCTGCCTCATCTTCTTCGTGGTCAGATGTTGAACCATTGT 2287 Query 2360 TTCCTCTTCAAACACGGTAAAACTTCATCTTCGAACA 2396 ||||||||||||||||||||||||||| ||| ||||| Sbjct 2288 TTCCTCTTCAAACACGGTAAAACTTCAGCTTTGAACA 2324 Score = 1179 bits (638), Expect = 0.0 Identities = 1132/1359 (83%), Gaps = 80/1359 (6%) Strand=Plus/Plus Query 109 GGAATCAAGATCCCGTACCCCTTTGGAATGGGAAAGGGTTGTTATCTGGAGAAGTGGTAC 168 |||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 73 GGAATCGAGATCGTGTACCCCTTTGGAGTCGGAAAGGGTTGTTATCTGGAGAAGTGGTAC 132 Query 169 GAAATTAC-T-T-GTAATACCTCTACTTCTGGAAAGCTCGTCCCTTATCTTTCCGTGATC 225 ||| |||| | | |||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 133 GAAGTTACATGTAATAATACCTCTACTTCTGGAAAGCTCGTCCCTTTTCTTTCCGTAATC 192 Query 226 AACAAGGAAGTTGTGGGTATCTCTCTTCCGACTGAAGGC-AG-GGGTT-CTAGATATAAC 282 ||||||||||||||| | |||||| ||||||| | || | || || || | | Sbjct 193 AACAAGGAAGTTGTGAATTTCTCTCCTCCGACT-CA-GCTCGAGGATTATTA-CGAGCCC 249 Query 283 AATCCATACCAGTCCGTTAACATTAAAAACCCAATAGCCTCAA-AGGAGTGCTCAAGCAA 341 ||| || | | |||| ||| |||||||||||| | |||| ||| ||||||||| | Sbjct 250 TTTCCGCACGGGACAGTTAGCATAAAAAACCCAATAACTTCAATGGGA-TGCTCAAGCGA 308 Query 342 TGGAGAAGAGCTTGGATCACTTTTGAATTTGACGGGTACCCCTTTTTATGTTAGCCAGCA 401 | |||||||||||||||||||||||||||||| | ||||||||| || ||||| ||| | Sbjct 309 CGAAGAAGAGCTTGGATCACTTTTGAATTTGACTGATACCCCTTTCTACGTTAG-CAGGA 367 Query 402 -CAATGA-ACTGGTAGCG-GTTGGTTGCAACAACACGGCATCGCTGACAAATGT-GAAGC 457 ||| | |||| ||| | ||||||||||| |||||||||||| |||||||||| | ||| Sbjct 368 GAAAT-ACACTGATAG-GAGTTGGTTGCAATAACACGGCATCGTTGACAAATGTCG-AGC 424 Query 458 CAAGCATAGTGCAATGCACATCAAGCTGCAGCACAAAACCCCATACGCATATC-AAAGAT 516 ||||||||||| ||||| ||| || ||| ||||| | |||| ||||| | | | |||| Sbjct 425 CAAGCATAGTGGGATGCAAATCTAGTTGCGGCACACATCCCCTTACGCCT-GCTAGAGAT 483 Query 517 TATCTTGCAGTACTAAATTGTCAGAATTACAATGGCTACGAGAAGAATTGTAATGAGGAC 576 ||||||||| || | | |||| | || | |||||| || || ||||||| || Sbjct 484 TATCTTGCACTAGTCAGTTGT--G-ATGAGTATGGCTTTGACCAGCGTTGTAAT---GA- 536 Query 577 AGCAGTATGGATGAAAGCATTATGGATGAAACAAGCTGCAATGGTATTGGATGCTGCAAT 636 | || | || | |||||||| ||| ||||||||||||||||||| |||||||| | Sbjct 537 A--AG-A-CGA-G---GCATTATGAATGGAACAAGCTGCAATGGTATTAGATGCTGCCAG 588 Query 637 GCATACATGCGCGGCGGTAGTATTCAACAGATTGTTGGTGTCACAATAGAAAACACCATA 696 ||| |||| | | || |||||| |||||||||||||||||| |||||||| ||||||| Sbjct 589 GCAAACAT--G-GTCGACAGTATTGAACAGATTGTTGGTGTCAGAATAGAAAGCACCATA 645 Query 697 ACGAGAGGGTGCAAAGTTGCCTTCTTGACAAACAAGGCAGAATATTTGTCTAATAAATCT 756 ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| Sbjct 646 ACGAGAGGGTGCAAAGTTGCCTTCTTGACAAACAAGGCATCCTTTTTGTCTAGTAAATCT 705 Query 757 GATCCGCAAAAGCTTCATGCTAGAGGATACAGTACGGTCGAGCTAGGATGGTTTATCCAT 816 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 706 GATCCGCAAGAGCTTCATGCTAGAGGATACAGTACGGTTGAGCTAGGATGGTTTATCCAT 765 Query 817 ACGACGAATCATTCGTTTATAAAGTCTCTGGGATGCTATAG---TGTAAAAGAGTACAAC 873 || ||||||||||| ||| |||||||||||||||||||||| ||||| ||||| || Sbjct 766 ACTACGAATCATTCATTTGTAAAGTCTCTGGGATGCTATAGTACTGTAATAGAGT---AC 822 Query 874 AATGAAAGATACACTAGT-ACCCAGAGAA-GAATTAACATAACAAGTTGTATATGCGATG 931 ||||| | | | | || |||| |||| ||| | || || ||||||| ||||||| Sbjct 823 -ATGAATG-T--ATTCGTCACCCCTAGAAGGAA-T-AC--AAGAAGTTGTGTATGCGA-C 873 Query 932 A-CAATGCTTATCTAAGCTATGCAAGATGCTCATGCACTAGGGGTTTCCAAGGCAACCCA 990 | ||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||| Sbjct 874 AGTAATACTTATCTAAGCTATGCAAGCTGCTCATGCACTAGAGGTTTCGAAGGCAACCCA 933 Query 991 TACCGTTTAGGCGGATGCAAAGATATCAATGAATG---TAAAGAAGAA---GAGGGCA-T 1043 ||||| || ||||||||||||||||| |||||||| ||| ||||| || || | | Sbjct 934 TACCGATTGGGCGGATGCAAAGATATTAATGAATGCCAAAAAAAAGAAGTTGATGGAACT 993 Query 1044 --GACTTACTGTGGGACCA-ACAAATGTGTCAATTTGCAAGGACACTTTAAATGTGTGT- 1099 ||||||||| | | | || || ||||||||||| ||| ||| | | ||||||| Sbjct 994 CACACTTACTGTAGTA-GAGGCACTTGCGTCAATTTGCAGGGAGACTATCATTGTGTGTA 1052 Query 1100 -----A-CA-AC--A--ATCATCGGCCACTTGCTATAGGGCTTGGTGCTAGTTTTGGCTC 1148 | || || | ||||||||||||| ||||||||||||||| | ||||| ||||| Sbjct 1053 CACAAATCACACAAATCATCATCGGCCACTGGCTATAGGGCTTGGTTCGAGTTTCGGCTC 1112 Query 1149 ATTGATCTTTGTTGTTGGAATATACTTGTTATACAAATTTATTAAAAAGCAAAGGAAGTT 1208 |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1113 ATTGATCTTTGTTGGTGGAATATACTGGTTATACAAAATTATTAAAAAGCAAAGGAAGTT 1172 Query 1209 AAACCAAAAGAAGAAGTTCTTCAAGCGTAATGGTGGTCTATTGTTGCAACAACAATTGAT 1268 |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 1173 AAACCAAAAGAAGAAGTTTTTCAAACGTAATGGGGGTCTATTGTTGCAACAACAATTGAC 1232 Query 1269 TTCAACAGTAGGCATGGTCGAAAAGACAATAGTGTTCAGTTCGCGAGAGTTGGAGAAAGC 1328 |||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1233 TTCAACAGAAGGAATGGTCGAGAAGACAAAAGTGTTCAGTTCGCGAGAGTTGGAGAAAGC 1292 Query 1329 TACTGAAAACTTCAGTTCAAACAGAATACTTGGCCAGGGTGGTCAAGGTACAGTGTACAA 1388 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1293 TACCGAAAACTTCAGTTCAAACAGAATACTTGGCCAGGGTGGTCAAGGTACTGTGTACAA 1352 Query 1389 GGGAATGCTTGTCGATGGAAGAATCGTTGCAGTAAAAAA 1427 |||||||||||||||||||||||| |||||||||||||| Sbjct 1353 GGGAATGCTTGTCGATGGAAGAATTGTTGCAGTAAAAAA 1391 > Ahg906760 jgi|Araly1|906760|Al_scaffold_0003_3888 Length=1959 Score = 922 bits (499), Expect = 0.0 Identities = 665/747 (89%), Gaps = 4/747 (1%) Strand=Plus/Plus Query 1081 GGACACTTTAAATGTGTGTACAACAATCATCGGCCACTTGCTATAGGGCTTGGTGCTAGT 1140 ||||||| | |||||| |||||| || ||||||||||| ||||||||| ||||| | ||| Sbjct 961 GGACACTATGAATGTGAGTACAAAAAACATCGGCCACTCGCTATAGGGTTTGGTTCGAGT 1020 Query 1141 TTTGGCTCATTGATCTTTGTTGTTGGAATATACTTGTTATACAAATTTATTAAAAAGCAA 1200 |||||||||||||| ||| ||||||||||||||| ||||||||||||||| | ||||||| Sbjct 1021 TTTGGCTCATTGATTTTTATTGTTGGAATATACTGGTTATACAAATTTATGAGAAAGCAA 1080 Query 1201 AGGAAGTTAAACCAAAAGAAGAAGTTCTTCAAGCGTAATGGTGGTCTATTGTTGCAACAA 1260 | || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1081 AAGAGGTTAAAGCAAAAGAAGAAGTTCTTCAAGCGTAATGGGGGTCTATTGTTGCAACAA 1140 Query 1261 CAATTGATTTCAACAGTAGGCATGGTCGAAAAGACAATAGTGTTCAGTTCGCGAGAGTTG 1320 ||||||| | |||||| ||||| ||||| ||||||| |||||||| |||| |||||||| Sbjct 1141 CAATTGACTGCAACAGAAGGCAACGTCGAGAAGACAAAAGTGTTCACTTCGAGAGAGTTG 1200 Query 1321 GAGAAAGCTACTGAAAAC-TTCAGTTCAAACAGAATACTTGGCCAGGGTGGTCAAGGTAC 1379 || ||||||||||||||| || | || ||| ||||||||||| ||||||||||||||||| Sbjct 1201 GAAAAAGCTACTGAAAACTTTAACTT-AAATAGAATACTTGGTCAGGGTGGTCAAGGTAC 1259 Query 1380 AGTGTACAAGGGAATGCTTGTCGATGGAAGAATCGTTGCAGTAAAAAAGTCCAAAGTCGT 1439 |||||||| |||||||||| ||| || ||||| || ||||| || |||||||||||||| Sbjct 1260 TGTGTACAAAGGAATGCTTGGCGACGGTAGAATAGTAGCAGTGAAGAAGTCCAAAGTCGT 1319 Query 1440 GGACGAAGACAAGCTAGAAGAGTTCATCAATGAGGTTGTCATTCTTTCACAGATCAACCA 1499 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1320 GGACGAAGACAAGCTAGAAGAGTTCATCAATGAGGTTGTCATTCTTTCGCAGATCAACCA 1379 Query 1500 CAGGAACATCGTGAAACTCTTGGGATGTTGCCTTGAGACAAAAGTCCCTGTTCTCGTCTA 1559 ||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 1380 CAGAAACATTGTGAAACTCTTGGGCTGTTGCCTTGAGACAAATGTCCCAGTTCTGGTCTA 1439 Query 1560 CGAGTTTATTCCTAATGGTAACCTTTTCGAACATCTTCATGATGAGTTTGATGAAAACAT 1619 ||||||||||||||||||||||||||| |||||||||||||| || || || || ||| Sbjct 1440 CGAGTTTATTCCTAATGGTAACCTTTTTGAACATCTTCATGAGGAATTGGAGGATTACAC 1499 Query 1620 TATGGCTACTT-GGAATATACGTCTCCGCATTGCTATAGATATTGCAGGAGCTCTCTCAT 1678 ||| |||||| |||| | || |||||||||||| |||||||||||| |||||| || | Sbjct 1500 GATGACTACTTGGGAA-GTGCGCCTCCGCATTGCTGTAGATATTGCAGAAGCTCTTTCTT 1558 Query 1679 ACTTGCACTCGTCTGCATCGTCTCCAATCTATCACAGAGACGTCAAGTCTACAAACATAA 1738 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1559 ACTTGCACTCGGCTGCATCCTCTCCAATCTATCACAGAGACGTCAAGTCTACAAACATAA 1618 Query 1739 TGTTGGATGAGAAATATCGAGCCAAGGTGTCTGATTTTGGAACGTCAAGAACGGTGACAG 1798 || ||||||| |||||||||||||| || |||||||||||||| |||||| | || || | Sbjct 1619 TGCTGGATGAAAAATATCGAGCCAAAGTATCTGATTTTGGAACTTCAAGATCAGTAACGG 1678 Query 1799 TGGATCATACCCACTTGACAACGGTAG 1825 ||||||| |||||||||||||| |||| Sbjct 1679 TGGATCACACCCACTTGACAACAGTAG 1705 > Ahg909607 jgi|Araly1|909607|Al_scaffold_0002_2688 Length=1860 Score = 800 bits (433), Expect = 0.0 Identities = 744/894 (83%), Gaps = 22/894 (2%) Strand=Plus/Plus Query 1174 TTGTTATACAAATTTATTAAAAAGC-AAAG-GAAGTTAAAC-CAAAAGAAGAAGTTCTTC 1230 ||||||| || |||||||| || || |||| | | | || | | ||| ||||| |||||| Sbjct 685 TTGTTATTCATATTTATTAGAAGGCGAAAGCGGA-TCAATCGC-AAA-AAGAATTTCTTC 741 Query 1231 AAGCGTAATGGTGGTCTATTGTTGCAACAACAATTGATTTCAACAGTAGGCATGGTCGAA 1290 || ||||| || ||||||||||| |||||||| || | |||||| | ||||| ||||| Sbjct 742 AAACGTAACGGAGGTCTATTGTTACAACAACAGTTAACTTCAACGGAAGGCACCGTCGAG 801 Query 1291 AAGACAATAGTGTTCAGTTCGCGAGAGTTGGAGAAAGCTACTGAAAACTTCAGTTCAAAC 1350 ||||||| ||| || |||||| | |||||||||||||||||||||||||||||| |||| Sbjct 802 AAGACAAAAGTATTTAGTTCGAGGGAGTTGGAGAAAGCTACTGAAAACTTCAGTGAAAAC 861 Query 1351 AGAATACTTGGCCAGGGTGGTCAAGGTACAGTGTACAAGGGAATGCTT-GTCGATGGAAG 1409 ||| | ||||| || ||||||||||| || ||||||||||||||| || |||||||| || Sbjct 862 AGAGTTCTTGGACAAGGTGGTCAAGGCACTGTGTACAAGGGAATG-TTGGTCGATGGTAG 920 Query 1410 AATCGTTGCAGT-AAAAAAGTCCAAAGTCGTGGACGAAGACAAGCTAGAAGAGTTCATCA 1468 || || ||||| |||||| || ||| ||||||||||||||||| ||||||| ||||| | Sbjct 921 CATTGTGGCAGTCAAAAAA-TCTAAAATCGTGGACGAAGACAAGTTAGAAGAATTCATAA 979 Query 1469 ATGAGGTTGTCATTCTTTCACAGATCAACCACAGGAACATCGTGAAACTCTTGGGATGTT 1528 ||||||| |||||||| || || || |||||||||||||||||||||||||||||||||| Sbjct 980 ATGAGGTCGTCATTCTATCGCATATTAACCACAGGAACATCGTGAAACTCTTGGGATGTT 1039 Query 1529 GCCTTGAGACAAAAGTCCCTGTTCTCGTCTACGAGTTTATT-CCTAATGGTAACCTTTTC 1587 |||||||||| |||||||| |||| ||||||||||||||| || ||||| || |||||| Sbjct 1040 GCCTTGAGACGGAAGTCCCTCTTCTGGTCTACGAGTTTATTTCC-AATGGAAATCTTTTC 1098 Query 1588 GAACATCTTCATGATGAGTT-TGATGAAAACATTATGGCTACTTGG-AATATACGTCTCC 1645 || ||||| ||||| || | | ||| ||| ||||| |||||| || | ||||| | Sbjct 1099 GAGCATCTCCATGACGAATCATC-TGATTACACGATGGCCACTTGGGAAG-TGCGTCTGC 1156 Query 1646 GCATTGCTATAGATATTGCAGGAGCTCTCTCATACTTGCACTC-GTCTGCATCGTCTCCA 1704 | || |||||||| ||||| |||||||| |||||| | ||||| | | |||||| |||| Sbjct 1157 GAATGGCTATAGAGATTGCCGGAGCTCTTTCATACCTACACTCAGCC-GCATCGGCTCCC 1215 Query 1705 ATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATATCGAGCCAAG 1764 || |||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 1216 ATTTATCACAGAGACATCAAATCTACAAACATAATGTTGGACGAGAAATATCGAGCTAAG 1275 Query 1765 GTGTCTGATTTTGGAACGTCAAGAACGGTGACAGTGGATCATACCCA-CTTGACAACGGT 1823 ||||| |||||||| || ||||||||||| |||| |||||||||||| || |||||| | Sbjct 1276 GTGTCCGATTTTGGTACTTCAAGAACGGTAACAGAGGATCATACCCATCT-GACAACACT 1334 Query 1824 AGTTTCAGGTACGGTGGGATATATGGATCCAGAGTACTTTC-AGTCTAGCCAATTCACAG 1882 ||||||||||| | |||||| |||||||||| || |||| |||| ||||||||||| | Sbjct 1335 GGTTTCAGGTACTGCAGGATATTTGGATCCAGAATA-TTTCCAGTCAAGCCAATTCACTG 1393 Query 1883 ACAAAAGTGATGTCTATAGCTTCGGGGTCGTGCTAGTGGAGCTAATAACTGGAGAAAAGT 1942 | || |||||||| ||||||||||| || ||| | ||||| || || || |||||||| Sbjct 1394 ATAAGAGTGATGTGTATAGCTTCGGAGTTGTGTTGGTGGAACTCATCACAGGAGAAAAAC 1453 Query 1943 CGATTTCTTTCTTGAGGTCTCAAGAAAACAGGACATTGGCAACTTATTTCATTCTTGCAA 2002 ||||||||||| | | ||||||||||||| ||||||||||||||||||| | || || Sbjct 1454 CGATTTCTTTCACGCGACCTCAAGAAAACAGAACATTGGCAACTTATTTCACTATTTCAG 1513 Query 2003 TGAAAGAAAACAAACTCTTCGATATTATCGATGCTCGAATAAGAGATGGTTGCA 2056 |||| ||||||| | || | ||||| |||||||||||||| ||||||| ||||| Sbjct 1514 TGAAGGAAAACAGAGTCGTGGATATCATCGATGCTCGAATCAGAGATGATTGCA 1567 Score = 84.2 bits (45), Expect = 4e-15 Identities = 59/65 (91%), Gaps = 3/65 (5%) Strand=Plus/Plus Query 2319 TGCTGCCTCATCTTCTTCGTGGTCAGATGTTGAACCATTGTTTCCT-CTTCAAACACGGT 2377 |||||| |||||||| |||||||||||||||||||||||||||||| || || ||||| | Sbjct 1773 TGCTGCATCATCTTCATCGTGGTCAGATGTTGAACCATTGTTTCCTTCT-CAGACACG-T 1830 Query 2378 AAAAC 2382 ||||| Sbjct 1831 AAAAC 1835 > Ahg931809 jgi|Araly1|931809|scaffold_304266.1 Length=1836 Score = 494 bits (267), Expect = 2e-138 Identities = 648/823 (79%), Gaps = 62/823 (8%) Strand=Plus/Plus Query 613 TGCAAT-GGTATTGGATGCTGCAATGCATACATGCGCGGCGGT-AGTATTCAACAGATTG 670 |||||| ||| || ||||||| | ||| |||||| | | | || ||||||||||||| Sbjct 618 TGCAATGGGT-TTCAATGCTGCGAGGCAAACATGC-CTAC--TCAG-ATTCAACAGATTG 672 Query 671 TTGGTGTCACAATAGAAAACACCATAACGA---GAGGGTGCAAAGTTGCCTTCTTGACAA 727 ||||||| | ||| || | ||||| ||| | |||||||||||||||||||||| ||| Sbjct 673 TTGGTGTGAGAATTGATAGCACCACAACAACCGGAGGGTGCAAAGTTGCCTTCTTAACAG 732 Query 728 ACAAGGCAGAATATTTGTCT-AATAAATCTGATCCGCAAAAG-CTTCATGCTAGAGGATA 785 || ||| | | | ||| | | ||| ||||||||| ||| | |||||||||| |||| | Sbjct 733 ACGAGGAATACTCTTT-TTTAAATGGTTCTGATCCG-AAACGACTTCATGCTAAAGGA-A 789 Query 786 CAGT--ACGGTCGAGCTAGGATGGTTTATCCATACGACGAATCATTCGTTTATAAAGTCT 843 || | || || |||||||||||||| |||||||| |||||| ||||| | || | ||| Sbjct 790 CA-TCAACCGTTGAGCTAGGATGGTTCATCCATACTTCGAATCGTTCGTATGTAGATTCT 848 Query 844 CTGGGATGCTATAG-TGT-AAA--A-GAGTA--C--AACAA-TGAAAGATACACTAGTAC 893 | |||||| | || | | ||| | | || | || || ||| | | | || | | Sbjct 849 TTAGGATGCCAAAGTTATGAAACTATGTCTAGGCTTAA-AAGGGAAGGCT--A-TAATGC 904 Query 894 CCA-GAGAAG-AATTAACATAACAAGTTGTATATGCGA-TGACAATGCTTATCTAAGCTA 950 | || ||| | || || ||||||| | ||||| | | ||||||||||||||||| Sbjct 905 TTATGA-AAGTACTT-TTGGAATAAGTTGTTTTTGCGACT-ATAATGCTTATCTAAGCTA 961 Query 951 TGCAAGATGCTCATGCACTAG-GGGTTTCCAAGGCAACCCATA-C--C---GTTTAGGCG 1003 ||||||||||||||||| | | |||| ||||||||||||||| | | | ||||| Sbjct 962 TGCAAGATGCTCATGCAAT-GACGGTTACCAAGGCAACCCATACCTTCAAGGAGGAGGCG 1020 Query 1004 GATGCAAAGATATCAATGAATG--TA-AAGAA-GA--A-GA-GGGCATGACTTACTG--T 1053 ||||||||||| | |||||||| || || || || | || || || || | || | Sbjct 1021 GATGCAAAGATGTTAATGAATGTCTAGAA-AAGGACTATGATGGAAATTAC-AAATGTAT 1078 Query 1054 GGGACCAACAAATGTGTCAATTTGCAAGGACACTTTAAATGTGTGTACAACAATCATCGG 1113 |||| || |||||| ||||||| ||||||| | |||||| |||||| || |||||| Sbjct 1079 GGGAGGGAC--GTGTGTCGATTTGCAGGGACACTATGAATGTGAGTACAAAAAACATCGG 1136 Query 1114 CCACTTGCTATAGGGCTTGGTGCTAGTTTTGGCTCATTGATCTTTGTTGTTGGAATATAC 1173 ||||| ||||||||| ||||| | ||||||||||||||||| ||| |||||||||||||| Sbjct 1137 CCACTCGCTATAGGGTTTGGTTCGAGTTTTGGCTCATTGATTTTTATTGTTGGAATATAC 1196 Query 1174 TTGTTATACAAATTTATTAAAAAGCAAAGGAAGTTAAACCAAAAGAAGAAGTTCTTCAAG 1233 | ||||||||||||||| | |||||||| || |||||| ||||||||||||||||||||| Sbjct 1197 TGGTTATACAAATTTATGAGAAAGCAAAAGAGGTTAAAGCAAAAGAAGAAGTTCTTCAAG 1256 Query 1234 CGTAATGGTGGTCTATTGTTGCAACAACAATTGATTTCAACAGTAGGCATGGTCGAAAAG 1293 |||||||| ||||||||||||||||||||||||| | |||||| ||||| ||||| ||| Sbjct 1257 CGTAATGGGGGTCTATTGTTGCAACAACAATTGACTGCAACAGAAGGCAACGTCGAGAAG 1316 Query 1294 ACAATAGTGTTCAGTTCGCGAGAGTTGGAGAAAGCTACTGAAAACTTCAG-TTCAAACAG 1352 |||| |||||||| |||| |||||||||| ||||||||||||||||| | || ||| || Sbjct 1317 ACAAAAGTGTTCACTTCGAGAGAGTTGGAAAAAGCTACTGAAAACTTTAACTT-AAATAG 1375 Query 1353 AATACTTGGCCAGGGTGGTCAAGGTACAGTGTACAAGGGAATG 1395 ||||||||| ||||||||||||||||| |||||||| |||||| Sbjct 1376 AATACTTGGTCAGGGTGGTCAAGGTACTGTGTACAAAGGAATG 1418 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92330753880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5