BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69740.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339208 jgi|Araly1|339208|fgenesh1_pg.C_scaffold_2001307 2028 0.0
> Ahg339208 jgi|Araly1|339208|fgenesh1_pg.C_scaffold_2001307
Length=1293
Score = 2028 bits (1098), Expect = 0.0
Identities = 1230/1295 (95%), Gaps = 4/1295 (0%)
Strand=Plus/Plus
Query 138 ATGGCTACTACACCCATCTTTAATGCTTCTTGCAGCTTTCCTTCGACTAGAGGAATCGAT 197
|||||||||||||| ||||||||||| || || |||||||| ||||| ||||||||||||
Sbjct 1 ATGGCTACTACACCAATCTTTAATGCCTCGTGTAGCTTTCCATCGACCAGAGGAATCGAT 60
Query 198 TGCAA-AAGCTATATTGGTCTGAGATCGAATGTGAGTAAAGTGAGTGTTGCTTCTTCTCG 256
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TGCAAGAA-CTATATTGGTCTGAGATCGAATGTGAGTAAAGTGAGTGTGGCTTCTTCTCG 119
Query 257 CATTGCAACTAGTCAACGTCGTAATCTTGTCGTAAGAGCTAGTGAATCCGGCAATGGACA 316
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 AATTGCAACTAGTCAACGTCGTAATCTTGTCATAAGAGCTAGTGAATCCGGCAATGGACA 179
Query 317 TGCTAAGAAGCTTGGAATGAGTGATGCTGAGTGTGAAGCTGCCGTTGCTGCTGGAAATGT 376
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 180 TGCTAAGAAGCTTGGAATGAGTGATGCTGAGTGTGAAGCCGCTGTTGCTGCTGGAAATGT 239
Query 377 TCCTGAAGCTCCTCCGGTTCCACCTAAACCGGCTGCTCCGGTTGGGACACCGATAATTAA 436
|||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
Sbjct 240 TCCTGAAGCTCCTCCGGTTCCACCTAAACCCGCTGCTCCCGTTGGTACACCGATAATTCA 299
Query 437 GCCTCTTAATCTAAGCCGACGCCCACGTCGTAACCGCGCTTCCCCTGTTACTAGAGCTGC 496
|||||||||||||||| ||||||||||||||||||| ||||||||||| | |||| ||
Sbjct 300 GCCTCTTAATCTAAGCAGACGCCCACGTCGTAACCGTGCTTCCCCTGTGGCGCGAGCCGC 359
Query 497 CTTTCAGGAAACTGATATCTCCCCTGCAAATTTTGTATATCCACTTTTCATTCATGAAGG 556
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 CTTTCAGGAAACTGATATCTCCCCTGCAAATTTTGTATACCCACTTTTCATTCATGAAGG 419
Query 557 TGAGGAAGACACGCCTATTGGAGCTATGCCCGGTTGCTACAGACTTGGCTGGAGGCATGG 616
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TGAGGAAGACACGCCTATTGGAGCTATGCCCGGTTGCTATAGACTTGGCTGGAGGCATGG 479
Query 617 TCTTGTACAAGAGGTTGCAAAGGCTCGAGCTGTTGGGGTAAACAGTATCGTTTTGTTCCC 676
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 480 TCTTGTACAAGAGGTTGCAAAGGCTCGAGCTGTTGGTGTAAACAGTATCGTCTTGTTCCC 539
Query 677 TAAAGTTCCTGAGGCTTTGAAGAATTCAACAGGGGATGAGGCATACAATGACAATGGTTT 736
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 540 TAAAGTTCCTGAGGCTTTGAAGAATCCAACAGGAGATGAGGCATACAATGACAATGGTTT 599
Query 737 GGTGCCTCGAACAATTCGTCTTCTTAAAGACAAATATCCTGATCTTATTATCTACACTGA 796
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 GGTGCCTCGAACAATTCGTCTTCTTAAAGACAAATATCCTGATCTTGTTATCTACACTGA 659
Query 797 TGTGGCTTTGGATCCTTACTCATCTGATGGTCACGATGGGATAGTTAGAGAGGATGGTGT 856
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 TGTGGCTTTGGATCCCTACTCATCCGATGGTCACGATGGGATAGTTAGAGAGGATGGTGT 719
Query 857 AATTATGAATGACGAAACAGTACACCAGCTCTGTAAACAAGCTGTTTCCCAGGCTCGAGC 916
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 720 AATTATGAATGACGAAACGGTACACCAGCTGTGTAAACAAGCTGTTTCCCAGGCCCGAGC 779
Query 917 TGGTGCTGACGTAGTTAGTCCGAGTGACATGATGGATGGGCGAGTAGGTGCAATCCGCT- 975
||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 780 TGGAGCGGACGTTGTCAGTCCGAGTGATATGATGGATGGGCGAGTAGGTGCAATCCG-TG 838
Query 976 CAGCTCTTGATGCTGAAGGATTTCAAAACGTCTCCATCATGTCATACACAGCCAAGTATG 1035
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 CAGCTCTTGATGCTGAAGGATTTCAAAACGTCTCCATCATGTCCTACACAGCCAAGTATG 898
Query 1036 CAAGTTCGTTTTACGGTCCTTTCCGTGAAGCCCTGGACTCAAACCCGCGTTTCGGAGACA 1095
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 899 CAAGTTCGTTTTACGGTCCTTTCCGTGAAGCCCTGGACTCTAATCCACGTTTCGGAGACA 958
Query 1096 AGAAAACGTATCAGATGAACCCAGCAAACTACAGAGAGGCATTGATTGAGGCACGTGAAG 1155
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 959 AGAAAACGTATCAGATGAACCCAGCAAATTACAGAGAGGCCTTGATTGAGGCACGTGAAG 1018
Query 1156 ACGAGGCTGAAGGAGCAGACATTCTCCTGGTGAAGCCAGGTCTTCCATATTTGGACATCA 1215
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1019 ACGAGGCTGAGGGAGCAGACATTCTTCTGGTGAAACCAGGTCTTCCATATTTGGACATCA 1078
Query 1216 TACGGCTTTTGAGGGACAAGTCTCCATTACCGATTGCTGCATACCAAGTTTCTGGAGAGT 1275
|||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1079 TACGGCTTCTGAGGGACAAATCTCCATTGCCCATTGCTGCATACCAAGTTTCTGGAGAGT 1138
Query 1276 ACTCGATGATCAAAGCAGGGGGAGTCCTGAAAATGATCGATGAAGAGAAAGTGATGATGG 1335
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1139 ACTCAATGATCAAAGCAGGGGGAGTTCTGAAGATGATCGATGAAGAGAAAGTGATGATGG 1198
Query 1336 AGTCACTGATGTGTTTACGCAGAGCTGGAGCGGACATCATCCTCACGTACTTCGCTCTTC 1395
|||| |||||||| |||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 1199 AGTCCCTGATGTGCTTACGCCGAGCTGGAGCGGACATCATCCTAACATACTTCGCTCTTC 1258
Query 1396 AAGCTGCTACTTGTTTGTGCGGCGAGAAGCGGTAG 1430
|||||||||||||||| ||||||||||||||||||
Sbjct 1259 AAGCTGCTACTTGTTTATGCGGCGAGAAGCGGTAG 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5