BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69750.1
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908555 jgi|Araly1|908555|Al_scaffold_0002_1636 466 2e-130
> Ahg908555 jgi|Araly1|908555|Al_scaffold_0002_1636
Length=297
Score = 466 bits (252), Expect = 2e-130
Identities = 282/297 (95%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 647 ATGAGTACAGGTGGAGCATTTGGAGGAAACAGAGGATTAAGACCAATACCACCAGAGAAG 706
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAGTACAGGTGGAGCGTTTGGAGGAAACAGAGGATTAAGACCAATACCACCAGAAAAA 60
Query 707 GGCATTTTCCCTTTGGATCACTTGCACGAGTGTGATGCGGAGAAGAAAGAATATCTAGGT 766
|||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 61 GGCATTTTTCCTTTGGATCACTTGCACGAATGCGATGCGGAGAAGAAAGAATATCTTGGT 120
Query 767 TGTCTTAAGTCTTCAGCTCACAAATCTGAACAATGTAGACATCTCTCTAAGAAATATCTC 826
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 TGTCTTAAGTCTTCAGCTCATAAATCTGAGCAATGTAGACATCTCTCAAAGAAATATCTC 180
Query 827 CAGTGTCGAATGGCTAAGAACTTGATGGCAAAGCAGGATATGGCTGAACTTGGATTCAGT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGTGTCGAATGGCTAAGAACTTGATGGCAAAGCAGGATATGGCTGAACTTGGATTCAGT 240
Query 887 GGTGTTAAAGAACTTGATTCCACTGAAGATAAGAATACAGAGAGTATCGAACATTGA 943
||||| |||||||| |||||| ||||||||||||||| ||||||||||||||| |||
Sbjct 241 GGTGTCAAAGAACTCGATTCCGCTGAAGATAAGAATAAAGAGAGTATCGAACAATGA 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5