BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69760.1

Length=1449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926277 jgi|Araly1|926277|scaffold_201838.1                        767    0.0  


> Ahg926277 jgi|Araly1|926277|scaffold_201838.1
Length=597

 Score =  767 bits (415),  Expect = 0.0
 Identities = 540/597 (90%), Gaps = 21/597 (4%)
 Strand=Plus/Plus

Query  60   TCTCTATCTTTCTTCTCCAAAAATGGCAGAAACAACAACAGTAACATCTTCATTGAAGCG  119
            |||| ||||| |||||||||||||||||||||||||||||||| ||||  ||||||||||
Sbjct  1    TCTCAATCTTCCTTCTCCAAAAATGGCAGAAACAACAACAGTATCATCGCCATTGAAGCG  60

Query  120  Tcaaagagatgagcaagaacaagaaatcatcaaaacacaagaagaaacgaaaagacaaaa  179
            |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  61   TCAAAGAGATGAGCAAGAACAAGAAATCATCATAACACAAGAAGAAACAAAAAGACAAAA  120

Query  180  gCCTTCTTCATCTTCTTCCTCGTACAACCAAGTTCTAACTCT-C---------T-----T  224
            ||||||||||||||||||||||||||||||||||| |||||| |         |     |
Sbjct  121  GCCTTCTTCATCTTCTTCCTCGTACAACCAAGTTCGAACTCTCCTAGATGATATAGAAGT  180

Query  225  A--A-AAGATGAAGCCGAGAATGACATAACTTCCCTAATCACCACGCTTCAGCAAGAAAT  281
            |  | |||||||||| || ||||||||||||||||||||||||||  |||||||||||||
Sbjct  181  AGTAGAAGATGAAGCTGACAATGACATAACTTCCCTAATCACCACTTTTCAGCAAGAAAT  240

Query  282  TTCTAATGAAGAGCAAAACGCTGCCGTTTTCGAAGAAAATCcttctctctcttcttcttg  341
             |||||| |||| ||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct  241  CTCTAATAAAGAACAAAACGCTGCCGTTTTTGAAGAGAACCCTTCTCTGTCTTCTTCTTG  300

Query  342  ---ctcctcttcctcttcttcATGCACTTCGAAAGAAGATGAGTACGACGGAGATAAAGA  398
               ||||||||| || |||||||||||||  ||||||||||||||||| | |||||||||
Sbjct  301  CTCCTCCTCTTCGTCGTCTTCATGCACTTTTAAAGAAGATGAGTACGAAGAAGATAAAGA  360

Query  399  GAAAGTGATGAAGCATCTTCTTGAAGCAACTGACGACGAACTAGGAATCCCTAACACTGA  458
            ||| |||||||||||||||||||||||  ||||||||||||| || ||||||||||||||
Sbjct  361  GAAGGTGATGAAGCATCTTCTTGAAGCTTCTGACGACGAACTTGGGATCCCTAACACTGA  420

Query  459  ATTTGGCGGGAGTAATTATGAGATGATTAAGAGTGAGACTAGTCAGGATTACGTTAATGG  518
            | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  421  AATTGGCGGGAGTAATTATGAGATGATTAAGAGTGAGACTAATCAGGATTACGTTAATGG  480

Query  519  GTTTAGTTTATTAGATGGGTTTAGTGTTGGGCTTTGGGAGCTTGAGGATGAAGCAGCTAA  578
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  481  GTTTAGTTTATTAGATGGGTTTGGTGTTGGGCTTTGGGAGCTTGAGGATGAAGCAGCTAA  540

Query  579  TTATTACACGTTGCTACAATCAGAACTGTTCATGTAGagaagggtaaaataggaaaa  635
            ||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct  541  TTATTACACGTTGCTGCAATCAGAACTGTTCATGTAGGGGAGGGTAAAATAGGAAAA  597



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 54202418635


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5