BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69770.1
Length=2764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315978 jgi|Araly1|315978|fgenesh1_pm.C_scaffold_2001011 3072 0.0
> Ahg315978 jgi|Araly1|315978|fgenesh1_pm.C_scaffold_2001011
Length=2517
Score = 3072 bits (1663), Expect = 0.0
Identities = 2264/2549 (89%), Gaps = 61/2549 (2%)
Strand=Plus/Plus
Query 67 ATGGCGCCGAAGCGAAAGAGACCTGCGACA-AAGGATGAC-ACTACCAAATCCATTCCCA 124
|||||||||||||| |||||| || | | | ||||| | | | |||||||||||||||||
Sbjct 1 ATGGCGCCGAAGCGCAAGAGAGCTAC-AAAGAAGGACG-CGAGTACCAAATCCATTCCCA 58
Query 125 AACCGAAGAAGAGAGCTCCTAAGCGAGCTAAGACGGTGAAAGAAGAGCCGGTGACAGTGG 184
|||||| |||||||||||||||||||||||| |||||||||||||||||||||| | | |
Sbjct 59 AACCGAGGAAGAGAGCTCCTAAGCGAGCTAAAACGGTGAAAGAAGAGCCGGTGAAATTCG 118
Query 185 TCGAGGAAGGGGAAAAGCATGTTGCGAGGTTTCTAGACGAGCCAATTCCAGAATCTGAAG 244
| ||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||
Sbjct 119 TGGAGGAAGGGGAAAAGTATGTTGCGAGGTTTCTCGACGAATCTATTCCAGAATCTGAAG 178
Query 245 CGAAGAGTACCTGGCCTGACAGATACAAACCGATTGA-GGTACAGCCACCTAAGGCTTCG 303
| |||||||| |||||||||||||||||||||||| | ||||||| |||||||||| ||
Sbjct 179 CCAAGAGTACTTGGCCTGACAGATACAAACCGATT-ACGGTACAGAAACCTAAGGCTCCG 237
Query 304 TCAAGAAAGAAGACGAAGGATGACGAAAAAGTTGAGATCATTCGTGCTCGATGCCATTAT 363
|||||||| | |||||||||||| ||||||| | |||||||||| |||||||||||||||
Sbjct 238 TCAAGAAACACGACGAAGGATGATGAAAAAGATAAGATCATTCGGGCTCGATGCCATTAT 297
Query 364 AGACGTGCGATTGTTGATGAGCGTCAGATATATGAGCTGAATGATGATGCTTATGTACAG 423
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 298 AGACGTGCGATTGTTGATGAGCGTCAGATATATGAGCTTAATGATGATGCTTATGTGCAG 357
Query 424 TCTGGTGAGGGAAAGGATCCCTTCATTTGTAAAATCATTGAAATGTTTGAAGGGGCTAAT 483
|||||||||||||| | |||||| |||| ||||| |||||||||||||||||||||||
Sbjct 358 TCTGGTGAGGGAAATCAGCCCTTCGTTTGCAAAATTGTTGAAATGTTTGAAGGGGCTAAT 417
Query 484 GGGAAACTGTATTTCACGGCTCGGTGGTTTTATAGACCTTCTGATACTGTAATGAAAGAG 543
|||||| |||||||||| ||||||||||| |||||| || |||||||||||||||| ||
Sbjct 418 GGGAAATTGTATTTCACAGCTCGGTGGTTCTATAGAGCTGATGATACTGTAATGAAACAG 477
Query 544 TTCGAGATTCTGA-TCAAGAAAAAGCGTGTGTTTTTCTCTGAGATACAAGATACAAATGA 602
||| ||||||||| | | | | ||||||||||||||||| ||||| | ||||||||||||
Sbjct 478 TTCAAGATTCTGATTGATG-ATAAGCGTGTGTTTTTCTCGGAGATTCGAGATACAAATGA 536
Query 603 ATTGGGATTACTTGAAAAGAAGCTGAACATTTTGATGATTCCCTTGAA-TGAAAATACTA 661
|||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||
Sbjct 537 ATTGGGATTACTTGAAAAGAAGTTGAACATTTTGATGATTCCCTT-AAGTGAAAATGCTG 595
Query 662 AAGAGACTATCCCTGCAACAGAAAA-CTGTGACTT-TT-TCTGTGACATGAACTATTTCT 718
| | ||||| |||||||| |||| |||||| || || | || || ||||||||| |||
Sbjct 596 CTGGGCCTATCGCTGCAACA-AAAACCTGTGA-TTATTAT-TGCGATATGAACTATCTCT 652
Query 719 TGCCTTACGATACATTTGAAGCTATACAACAAGAAACCATGATGGCTATAAGTGAAAGTT 778
||||||||||||||||||||||| |||||||||| |||| |||||| ||||||||||||
Sbjct 653 TGCCTTACGATACATTTGAAGCTTTACAACAAGATACCAAAATGGCTGTAAGTGAAAGTT 712
Query 779 CAACAATATCCAGTGATACTGATATAAGA-GAAGGAGCTGCTGCCATATCAGAGATTGGA 837
||||||||||||||||||||||| ||| | |||||||||||||| |||||||||| | |
Sbjct 713 CAACAATATCCAGTGATACTGATGTAA-ACGAAGGAGCTGCTGCTATATCAGAGAATCAA 771
Query 838 GAATGTTCTCAAGAAACA-GAAGGTCACAA-AAAGGCAACTTTGCTTGACCTTTACTCCG 895
||| |||||||||| ||| | || ||| || | || ||||||||||||||||||||||||
Sbjct 772 GAAGGTTCTCAAGACACACG-AGTTCA-AAGAGAGACAACTTTGCTTGACCTTTACTCCG 829
Query 896 GCTGTGGAGCTATGTCGACAGGGTTGTGCATGGGTGCACAACTGTCTGGTTTGAACCTCG 955
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 830 GCTGTGGAGCTATGTCCACAGGGTTGTGCATGGGTGCACAACTCTCTGGTTTGAACCTTG 889
Query 956 TCACTAAATGGGCTGTTGACATGAATGCACATGCATGTAAAAGCTTGCAGCATAACCACC 1015
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 890 TCACTAAATGGGCTGTTGACATGAATGCGCATGCATGTAAAAGCTTGGGGCATAACCACC 949
Query 1016 CAGAGACAAACGTGAGAAACATGACCGCAGAAGATTTCTTGTTTCTGCTTAAGGAGTGGG 1075
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 950 CAGAGACACACGTGAGAAACATGTCCGCAGAAGATTTCTTGTTTCTGCTTAAGGAGTGGG 1009
Query 1076 AGAAGCTATGCATTCATTTCTCTTTGAGAAATAGTCCAAATTCAGAAGAATATGCCAACC 1135
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1010 AGAAGCTATGCATTCATTTCTCTTTGAGAAATTGTCCAAATTCAGAAGAATATGAAAACC 1069
Query 1136 TTCACGGTTTGAATAATGTTGAGGACAATGAAGATGTCAGCGAGGAGAGTGAAAATGAAG 1195
|||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1070 TTCACGGTATGACTAATGTTGAGGACAATGAAGATGTCAGCGAGGAGAGTGATGATGAAG 1129
Query 1196 ATGATGGAGAAGTTTTTACTGTTGACAAGATTGTTGGTATTTCCTTCGGAGTCCCTAAAA 1255
|||| || ||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 1130 ATGACGGCGAAGTTTTTACAGTGGAAAAGATTGTTGGTATTTCCTTCGGAGTCCCTAAAA 1189
Query 1256 AGTTATTGAAACGTGGACTTTATTTGAAGGTAAGGTGGCTGAATTATGATGATTCTCATG 1315
||||| ||||||||| ||||||||||||||| | ||| ||||||| |||||||| ||||
Sbjct 1190 AGTTACAGAAACGTGGTCTTTATTTGAAGGTACGATGGTTGAATTACGATGATTCCCATG 1249
Query 1316 ATACATGGGAGCCTATTGAAGGACTCAGTAATTGCCGGGGTAAA-ATTGAAG-AGT-TCG 1372
|||| |||||||||||||||||||||||||||||||||| ||| || ||| ||| | |
Sbjct 1250 ATACCTGGGAGCCTATTGAAGGACTCAGTAATTGCCGGGA-AAAGATA-AAGGAGTAT-G 1306
Query 1373 TTAAACTTGGATATAAATCTGGCATCCTTCCGTTACCAGGAGGTGTTGATGTTGTCTGCG 1432
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1307 TCAAACTTGGATATGAATCTGGCATCCTTCCGTTACCAGGAGGTGTTGATGTTGTCTGTG 1366
Query 1433 GTGGGCCACCATGCCAAGGAATCAGTGGTCACAACCGCTTCAGGAACTTATTGGACCCTC 1492
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1367 GCGGGCCGCCATGCCAAGGAATCAGTGGTCATAACCGCTTCAGGAACTTATTGGAGCCTC 1426
Query 1493 TAGAAGATCAGAAAAACAAGCAGCTT-TTGGTGTATATGAACATTGTAGAATATT-TGAA 1550
|| ||||| ||||||||||||||||| ||| | |||||||||||||| || | || | ||
Sbjct 1427 TAAAAGATGAGAAAAACAAGCAGCTTCTTGTT-TATATGAACATTGTGGAGT-TTCTAAA 1484
Query 1551 GCCTAAGTTCGTTTTGATGGAAAACGTCGTTGACATGCTGAAGATGGCTAAGGGCTATCT 1610
||| || | |||||||||||| || || || |||||||| |||||| || ||||||||||
Sbjct 1485 GCCGAAATACGTTTTGATGGAGAATGTGGTAGACATGCTTAAGATGTCTGAGGGCTATCT 1544
Query 1611 TGCACGGTT-TGCTGTTGGACGCCTTCTACAGATGAATTACCAAGTGAGGAATGG-AATG 1668
||| || || |||||| ||| | ||| | || |||||||||||||| |||| ||| ||||
Sbjct 1545 TGCGCG-TTATGCTGTGGGAAGGCTTATCCAAATGAATTACCAAGTCAGGA-TGGGAATG 1602
Query 1669 ATGGCAGCTGGAGCTTATGGGCTTGCTCAGTTTCGTTTGAGGTTCTTTCT-ATGGGGTGC 1727
||||| || ||||| ||||| ||||||||||| || ||| ||||||| || |||||||||
Sbjct 1603 ATGGCGGCAGGAGCATATGGTCTTGCTCAGTTCCGCTTGCGGTTCTT-CTTATGGGGTGC 1661
Query 1728 ACTCCCTAGTGA-GATAATTCCGCAGTTCCCACTTCCAACACATGATCTAGTTCATAGAG 1786
||||||||| | ||| ||||| ||||||||||||||||| |||||| |||| || ||||
Sbjct 1662 ACTCCCTAGC-ATGATGATTCCTCAGTTCCCACTTCCAACTCATGATTTAGTACAGAGAG 1720
Query 1787 GAAATATTGTCAAGGAGTTTCAGGGAAACATAGTAGCCTATGATGAAGGACATACTGTGA 1846
|||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 1721 GAAATATTGTTAAGGAGTTTCAGGGAAACACAGTAGCCTATGATGAAGGCCACACTGTGA 1780
Query 1847 AGTTAGCAGACAAGCTTTTG-TT-GAAGGATGTGATTTCTGATCTTCCTGCAGTTGCCAA 1904
||||||||||||||||||| || || | ||||||||||||||||||| || |||| |||
Sbjct 1781 AGTTAGCAGACAAGCTTTTACTTAGA-G-ATGTGATTTCTGATCTTCCCGCTGTTGACAA 1838
Query 1905 CAGTGAAAAAAGAGACGAGATTAC-ATATGACAAAGATCCCACAACGCCATTTCAAAAGT 1963
||||||| |||| |||||||| || ||||||| ||||||| || ||||||||| |||
Sbjct 1839 CAGTGAACAAAGGGACGAGAT-ACCATATGACCAAGATCCTGTGACACCATTTCAACAGT 1897
Query 1964 TCATCAGATTGAGAAAGGATGAAGCGTCAGGTTCAC-AATCAAAGTCCAAGTCCAAAAAG 2022
|||||||||| |||||||||||||||| |||||||| || | ||||||||||||||||||
Sbjct 1898 TCATCAGATTAAGAAAGGATGAAGCGTTAGGTTCACTAA-CTAAGTCCAAGTCCAAAAAG 1956
Query 2023 CATGTCTTATATGATCATCA-CCCTCTTAATCTTAATATAAATGACTATGAACGGGTTTG 2081
|||||||| || |||||||| ||| || ||||| ||||| ||||| ||| |||| |||||
Sbjct 1957 CATGTCTTGTACGATCATCATCCC-CTGAATCTGAATATTAATGATTATCAACGAGTTTG 2015
Query 2082 TCAG-GTCCCCAAGAGAAAGGGAGCGAATTTTAGGGACTTTCCTGGTGTTATTGTTGGAC 2140
| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2016 T-AGAGTCCCCAAGAGGAAGGGAGCGAATTTCAGGGACTTTCCTGGTGTTATTGTTGGAC 2074
Query 2141 CTGGTAATGTAGTCAAGTTGGAAGAGGGAAAGGAAAGGGTCAAACTTGAATCTGGAAAAA 2200
| |||||||||||| | ||||| |||| | | |||| ||| |||||||||||||||
Sbjct 2075 CCGGTAATGTAGTCCACTTGGATGAGG-ATATGAAAA--TCATGCTTGAATCTGGAAAA- 2130
Query 2201 CA-TTGGTTCCCGATTATGCCTTAACATATGTCGATGGGAAATCATGCAAACCTTTTGGT 2259
|| ||||||||| ||||||| || || | ||||||||||| ||| | |||||||||||||
Sbjct 2131 CAATTGGTTCCCAATTATGCATTGACGTTTGTCGATGGGACATCGTCCAAACCTTTTGGT 2190
Query 2260 CGTCTTTGGTGGGACGAAATTGTCCCCACTGTTGTCACACGGGCAGAACCCCACAACCAG 2319
|| |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||||
Sbjct 2191 CGCCTTTGGTGGGACGAGATAGTCCCTACTGTTGTCACACGTGCAGAACCGCACAACCAG 2250
Query 2320 GTGATCATTCATCCAGA-GCAAAATCGGGTTTTATCCATTCGAGAAAATGCGAGACTCCA 2378
||||||||||||||| | |||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 2251 GTGATCATTCATCCA-ACGCAAGATCGTGTTTTATCCATTCGAGAAAATGCCAGACTCCA 2309
Query 2379 AGGCTTTCCTGATGACTACAAACTCTTTGGCCCACCCAAACAGAAGTACATTCAAGTAGG 2438
||||||||||||||||||||||||||||| ||| | ||||| ||||| || ||||| ||
Sbjct 2310 GGGCTTTCCTGATGACTACAAACTCTTTGGACCAACGAAACAAAAGTATATCCAAGTCGG 2369
Query 2439 TAACGCTGTAGCTGTGCCAGTAGCGAAGGCCCTTGGATATGCTTTGGGAA-CAGCTTTCC 2497
|||||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 2370 TAACGCGGTAGCTGTGCCAGTAGCAAAGGCCCTTGGATATGCTTTGGGAATC-GCTTTCC 2428
Query 2498 AGGGACTCGCAGTTGGGAAAGATCCACTTCTTACTCTGCCTGAAGGTTTTGCATTCATGA 2557
|||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2429 AGGGTCTCGCAGATGGGAAGGATCCACTTCTTACTCTTCCTGAAGGTTTTGCATTCATGA 2488
Query 2558 AGCCAACTCTTCCTTCCGAGCTTGCATGA 2586
|||||| ||||||||||||||||||||||
Sbjct 2489 AGCCAAATCTTCCTTCCGAGCTTGCATGA 2517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104291090810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5