BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69770.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value Ahg315978 jgi|Araly1|315978|fgenesh1_pm.C_scaffold_2001011 3072 0.0 > Ahg315978 jgi|Araly1|315978|fgenesh1_pm.C_scaffold_2001011 Length=2517 Score = 3072 bits (1663), Expect = 0.0 Identities = 2264/2549 (89%), Gaps = 61/2549 (2%) Strand=Plus/Plus Query 67 ATGGCGCCGAAGCGAAAGAGACCTGCGACA-AAGGATGAC-ACTACCAAATCCATTCCCA 124 |||||||||||||| |||||| || | | | ||||| | | | ||||||||||||||||| Sbjct 1 ATGGCGCCGAAGCGCAAGAGAGCTAC-AAAGAAGGACG-CGAGTACCAAATCCATTCCCA 58 Query 125 AACCGAAGAAGAGAGCTCCTAAGCGAGCTAAGACGGTGAAAGAAGAGCCGGTGACAGTGG 184 |||||| |||||||||||||||||||||||| |||||||||||||||||||||| | | | Sbjct 59 AACCGAGGAAGAGAGCTCCTAAGCGAGCTAAAACGGTGAAAGAAGAGCCGGTGAAATTCG 118 Query 185 TCGAGGAAGGGGAAAAGCATGTTGCGAGGTTTCTAGACGAGCCAATTCCAGAATCTGAAG 244 | ||||||||||||||| |||||||||||||||| ||||| | |||||||||||||||| Sbjct 119 TGGAGGAAGGGGAAAAGTATGTTGCGAGGTTTCTCGACGAATCTATTCCAGAATCTGAAG 178 Query 245 CGAAGAGTACCTGGCCTGACAGATACAAACCGATTGA-GGTACAGCCACCTAAGGCTTCG 303 | |||||||| |||||||||||||||||||||||| | ||||||| |||||||||| || Sbjct 179 CCAAGAGTACTTGGCCTGACAGATACAAACCGATT-ACGGTACAGAAACCTAAGGCTCCG 237 Query 304 TCAAGAAAGAAGACGAAGGATGACGAAAAAGTTGAGATCATTCGTGCTCGATGCCATTAT 363 |||||||| | |||||||||||| ||||||| | |||||||||| ||||||||||||||| Sbjct 238 TCAAGAAACACGACGAAGGATGATGAAAAAGATAAGATCATTCGGGCTCGATGCCATTAT 297 Query 364 AGACGTGCGATTGTTGATGAGCGTCAGATATATGAGCTGAATGATGATGCTTATGTACAG 423 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 298 AGACGTGCGATTGTTGATGAGCGTCAGATATATGAGCTTAATGATGATGCTTATGTGCAG 357 Query 424 TCTGGTGAGGGAAAGGATCCCTTCATTTGTAAAATCATTGAAATGTTTGAAGGGGCTAAT 483 |||||||||||||| | |||||| |||| ||||| ||||||||||||||||||||||| Sbjct 358 TCTGGTGAGGGAAATCAGCCCTTCGTTTGCAAAATTGTTGAAATGTTTGAAGGGGCTAAT 417 Query 484 GGGAAACTGTATTTCACGGCTCGGTGGTTTTATAGACCTTCTGATACTGTAATGAAAGAG 543 |||||| |||||||||| ||||||||||| |||||| || |||||||||||||||| || Sbjct 418 GGGAAATTGTATTTCACAGCTCGGTGGTTCTATAGAGCTGATGATACTGTAATGAAACAG 477 Query 544 TTCGAGATTCTGA-TCAAGAAAAAGCGTGTGTTTTTCTCTGAGATACAAGATACAAATGA 602 ||| ||||||||| | | | | ||||||||||||||||| ||||| | |||||||||||| Sbjct 478 TTCAAGATTCTGATTGATG-ATAAGCGTGTGTTTTTCTCGGAGATTCGAGATACAAATGA 536 Query 603 ATTGGGATTACTTGAAAAGAAGCTGAACATTTTGATGATTCCCTTGAA-TGAAAATACTA 661 |||||||||||||||||||||| |||||||||||||||||||||| || ||||||| || Sbjct 537 ATTGGGATTACTTGAAAAGAAGTTGAACATTTTGATGATTCCCTT-AAGTGAAAATGCTG 595 Query 662 AAGAGACTATCCCTGCAACAGAAAA-CTGTGACTT-TT-TCTGTGACATGAACTATTTCT 718 | | ||||| |||||||| |||| |||||| || || | || || ||||||||| ||| Sbjct 596 CTGGGCCTATCGCTGCAACA-AAAACCTGTGA-TTATTAT-TGCGATATGAACTATCTCT 652 Query 719 TGCCTTACGATACATTTGAAGCTATACAACAAGAAACCATGATGGCTATAAGTGAAAGTT 778 ||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| Sbjct 653 TGCCTTACGATACATTTGAAGCTTTACAACAAGATACCAAAATGGCTGTAAGTGAAAGTT 712 Query 779 CAACAATATCCAGTGATACTGATATAAGA-GAAGGAGCTGCTGCCATATCAGAGATTGGA 837 ||||||||||||||||||||||| ||| | |||||||||||||| |||||||||| | | Sbjct 713 CAACAATATCCAGTGATACTGATGTAA-ACGAAGGAGCTGCTGCTATATCAGAGAATCAA 771 Query 838 GAATGTTCTCAAGAAACA-GAAGGTCACAA-AAAGGCAACTTTGCTTGACCTTTACTCCG 895 ||| |||||||||| ||| | || ||| || | || |||||||||||||||||||||||| Sbjct 772 GAAGGTTCTCAAGACACACG-AGTTCA-AAGAGAGACAACTTTGCTTGACCTTTACTCCG 829 Query 896 GCTGTGGAGCTATGTCGACAGGGTTGTGCATGGGTGCACAACTGTCTGGTTTGAACCTCG 955 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | Sbjct 830 GCTGTGGAGCTATGTCCACAGGGTTGTGCATGGGTGCACAACTCTCTGGTTTGAACCTTG 889 Query 956 TCACTAAATGGGCTGTTGACATGAATGCACATGCATGTAAAAGCTTGCAGCATAACCACC 1015 |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 890 TCACTAAATGGGCTGTTGACATGAATGCGCATGCATGTAAAAGCTTGGGGCATAACCACC 949 Query 1016 CAGAGACAAACGTGAGAAACATGACCGCAGAAGATTTCTTGTTTCTGCTTAAGGAGTGGG 1075 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 950 CAGAGACACACGTGAGAAACATGTCCGCAGAAGATTTCTTGTTTCTGCTTAAGGAGTGGG 1009 Query 1076 AGAAGCTATGCATTCATTTCTCTTTGAGAAATAGTCCAAATTCAGAAGAATATGCCAACC 1135 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 1010 AGAAGCTATGCATTCATTTCTCTTTGAGAAATTGTCCAAATTCAGAAGAATATGAAAACC 1069 Query 1136 TTCACGGTTTGAATAATGTTGAGGACAATGAAGATGTCAGCGAGGAGAGTGAAAATGAAG 1195 |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1070 TTCACGGTATGACTAATGTTGAGGACAATGAAGATGTCAGCGAGGAGAGTGATGATGAAG 1129 Query 1196 ATGATGGAGAAGTTTTTACTGTTGACAAGATTGTTGGTATTTCCTTCGGAGTCCCTAAAA 1255 |||| || ||||||||||| || || |||||||||||||||||||||||||||||||||| Sbjct 1130 ATGACGGCGAAGTTTTTACAGTGGAAAAGATTGTTGGTATTTCCTTCGGAGTCCCTAAAA 1189 Query 1256 AGTTATTGAAACGTGGACTTTATTTGAAGGTAAGGTGGCTGAATTATGATGATTCTCATG 1315 ||||| ||||||||| ||||||||||||||| | ||| ||||||| |||||||| |||| Sbjct 1190 AGTTACAGAAACGTGGTCTTTATTTGAAGGTACGATGGTTGAATTACGATGATTCCCATG 1249 Query 1316 ATACATGGGAGCCTATTGAAGGACTCAGTAATTGCCGGGGTAAA-ATTGAAG-AGT-TCG 1372 |||| |||||||||||||||||||||||||||||||||| ||| || ||| ||| | | Sbjct 1250 ATACCTGGGAGCCTATTGAAGGACTCAGTAATTGCCGGGA-AAAGATA-AAGGAGTAT-G 1306 Query 1373 TTAAACTTGGATATAAATCTGGCATCCTTCCGTTACCAGGAGGTGTTGATGTTGTCTGCG 1432 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1307 TCAAACTTGGATATGAATCTGGCATCCTTCCGTTACCAGGAGGTGTTGATGTTGTCTGTG 1366 Query 1433 GTGGGCCACCATGCCAAGGAATCAGTGGTCACAACCGCTTCAGGAACTTATTGGACCCTC 1492 | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1367 GCGGGCCGCCATGCCAAGGAATCAGTGGTCATAACCGCTTCAGGAACTTATTGGAGCCTC 1426 Query 1493 TAGAAGATCAGAAAAACAAGCAGCTT-TTGGTGTATATGAACATTGTAGAATATT-TGAA 1550 || ||||| ||||||||||||||||| ||| | |||||||||||||| || | || | || Sbjct 1427 TAAAAGATGAGAAAAACAAGCAGCTTCTTGTT-TATATGAACATTGTGGAGT-TTCTAAA 1484 Query 1551 GCCTAAGTTCGTTTTGATGGAAAACGTCGTTGACATGCTGAAGATGGCTAAGGGCTATCT 1610 ||| || | |||||||||||| || || || |||||||| |||||| || |||||||||| Sbjct 1485 GCCGAAATACGTTTTGATGGAGAATGTGGTAGACATGCTTAAGATGTCTGAGGGCTATCT 1544 Query 1611 TGCACGGTT-TGCTGTTGGACGCCTTCTACAGATGAATTACCAAGTGAGGAATGG-AATG 1668 ||| || || |||||| ||| | ||| | || |||||||||||||| |||| ||| |||| Sbjct 1545 TGCGCG-TTATGCTGTGGGAAGGCTTATCCAAATGAATTACCAAGTCAGGA-TGGGAATG 1602 Query 1669 ATGGCAGCTGGAGCTTATGGGCTTGCTCAGTTTCGTTTGAGGTTCTTTCT-ATGGGGTGC 1727 ||||| || ||||| ||||| ||||||||||| || ||| ||||||| || ||||||||| Sbjct 1603 ATGGCGGCAGGAGCATATGGTCTTGCTCAGTTCCGCTTGCGGTTCTT-CTTATGGGGTGC 1661 Query 1728 ACTCCCTAGTGA-GATAATTCCGCAGTTCCCACTTCCAACACATGATCTAGTTCATAGAG 1786 ||||||||| | ||| ||||| ||||||||||||||||| |||||| |||| || |||| Sbjct 1662 ACTCCCTAGC-ATGATGATTCCTCAGTTCCCACTTCCAACTCATGATTTAGTACAGAGAG 1720 Query 1787 GAAATATTGTCAAGGAGTTTCAGGGAAACATAGTAGCCTATGATGAAGGACATACTGTGA 1846 |||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| Sbjct 1721 GAAATATTGTTAAGGAGTTTCAGGGAAACACAGTAGCCTATGATGAAGGCCACACTGTGA 1780 Query 1847 AGTTAGCAGACAAGCTTTTG-TT-GAAGGATGTGATTTCTGATCTTCCTGCAGTTGCCAA 1904 ||||||||||||||||||| || || | ||||||||||||||||||| || |||| ||| Sbjct 1781 AGTTAGCAGACAAGCTTTTACTTAGA-G-ATGTGATTTCTGATCTTCCCGCTGTTGACAA 1838 Query 1905 CAGTGAAAAAAGAGACGAGATTAC-ATATGACAAAGATCCCACAACGCCATTTCAAAAGT 1963 ||||||| |||| |||||||| || ||||||| ||||||| || ||||||||| ||| Sbjct 1839 CAGTGAACAAAGGGACGAGAT-ACCATATGACCAAGATCCTGTGACACCATTTCAACAGT 1897 Query 1964 TCATCAGATTGAGAAAGGATGAAGCGTCAGGTTCAC-AATCAAAGTCCAAGTCCAAAAAG 2022 |||||||||| |||||||||||||||| |||||||| || | |||||||||||||||||| Sbjct 1898 TCATCAGATTAAGAAAGGATGAAGCGTTAGGTTCACTAA-CTAAGTCCAAGTCCAAAAAG 1956 Query 2023 CATGTCTTATATGATCATCA-CCCTCTTAATCTTAATATAAATGACTATGAACGGGTTTG 2081 |||||||| || |||||||| ||| || ||||| ||||| ||||| ||| |||| ||||| Sbjct 1957 CATGTCTTGTACGATCATCATCCC-CTGAATCTGAATATTAATGATTATCAACGAGTTTG 2015 Query 2082 TCAG-GTCCCCAAGAGAAAGGGAGCGAATTTTAGGGACTTTCCTGGTGTTATTGTTGGAC 2140 | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 2016 T-AGAGTCCCCAAGAGGAAGGGAGCGAATTTCAGGGACTTTCCTGGTGTTATTGTTGGAC 2074 Query 2141 CTGGTAATGTAGTCAAGTTGGAAGAGGGAAAGGAAAGGGTCAAACTTGAATCTGGAAAAA 2200 | |||||||||||| | ||||| |||| | | |||| ||| ||||||||||||||| Sbjct 2075 CCGGTAATGTAGTCCACTTGGATGAGG-ATATGAAAA--TCATGCTTGAATCTGGAAAA- 2130 Query 2201 CA-TTGGTTCCCGATTATGCCTTAACATATGTCGATGGGAAATCATGCAAACCTTTTGGT 2259 || ||||||||| ||||||| || || | ||||||||||| ||| | ||||||||||||| Sbjct 2131 CAATTGGTTCCCAATTATGCATTGACGTTTGTCGATGGGACATCGTCCAAACCTTTTGGT 2190 Query 2260 CGTCTTTGGTGGGACGAAATTGTCCCCACTGTTGTCACACGGGCAGAACCCCACAACCAG 2319 || |||||||||||||| || ||||| |||||||||||||| |||||||| ||||||||| Sbjct 2191 CGCCTTTGGTGGGACGAGATAGTCCCTACTGTTGTCACACGTGCAGAACCGCACAACCAG 2250 Query 2320 GTGATCATTCATCCAGA-GCAAAATCGGGTTTTATCCATTCGAGAAAATGCGAGACTCCA 2378 ||||||||||||||| | |||| |||| ||||||||||||||||||||||| |||||||| Sbjct 2251 GTGATCATTCATCCA-ACGCAAGATCGTGTTTTATCCATTCGAGAAAATGCCAGACTCCA 2309 Query 2379 AGGCTTTCCTGATGACTACAAACTCTTTGGCCCACCCAAACAGAAGTACATTCAAGTAGG 2438 ||||||||||||||||||||||||||||| ||| | ||||| ||||| || ||||| || Sbjct 2310 GGGCTTTCCTGATGACTACAAACTCTTTGGACCAACGAAACAAAAGTATATCCAAGTCGG 2369 Query 2439 TAACGCTGTAGCTGTGCCAGTAGCGAAGGCCCTTGGATATGCTTTGGGAA-CAGCTTTCC 2497 |||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||| Sbjct 2370 TAACGCGGTAGCTGTGCCAGTAGCAAAGGCCCTTGGATATGCTTTGGGAATC-GCTTTCC 2428 Query 2498 AGGGACTCGCAGTTGGGAAAGATCCACTTCTTACTCTGCCTGAAGGTTTTGCATTCATGA 2557 |||| ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 2429 AGGGTCTCGCAGATGGGAAGGATCCACTTCTTACTCTTCCTGAAGGTTTTGCATTCATGA 2488 Query 2558 AGCCAACTCTTCCTTCCGAGCTTGCATGA 2586 |||||| |||||||||||||||||||||| Sbjct 2489 AGCCAAATCTTCCTTCCGAGCTTGCATGA 2517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104291090810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5