BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69780.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476108 jgi|Araly1|476108|fgenesh2_kg.2__1238__AT1G69780.1 1916 0.0
Ahg472703 jgi|Araly1|472703|fgenesh2_kg.1__2657__AT1G26960.1 357 1e-97
> Ahg476108 jgi|Araly1|476108|fgenesh2_kg.2__1238__AT1G69780.1
Length=1323
Score = 1916 bits (1037), Expect = 0.0
Identities = 1113/1149 (97%), Gaps = 8/1149 (1%)
Strand=Plus/Plus
Query 1 ACCAGAAGTGGTATAGTCTAGGCCGATACATTTCACTAtctctctctcttttgtttttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ACCAGAAGTGGTATAGTCTAGGCCGATACATTTCACTATCTCTCTCTCTGTTGTTTTTCC 60
Query 61 tcttcttctttttttccatttgatttc-AA-ACTCTCACACAAAGAGCTTCAGATTTATA 118
||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 TCTTCTT-TTTTTTTCCATTTGATTTCAAAGACTCTCACACAAAGAGCTTCAGATTTATA 119
Query 119 AGACCATGATAATGGCTTTAAGACAAAGATTGGCAAGAAGAAAAAACTAAAGAGAAACGA 178
||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 120 AGAGCGTGATAATGGCTTTAAGACAAAGATTGGTAAGAAGAAAAAACTAGAGAGAAACGA 179
Query 179 CCAAAATCTCAAGCAAACAGTACTAACTTCTGTTGCAAAACAGAAGAAGATGTCTTGTAA 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CCAAAATCTCAAGCAAACAGTACTATCTTCTGTTGCAAAACAGAAGAAGATGTCTTGTAA 239
Query 239 TAATGGAATGTCTTTTTTCCCTTCAAATTTCATGATCCAAACCTCTTACGAAGATGATCA 298
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 240 TAATGGAATGTCTTTTTTCCCTTCAAATTTCATGATCCAAAACTCTTACGAAGACGATCA 299
Query 299 TCCTCATCAATCTCCATCTCTTGCTCCTCTTCTTCCTTCTTGCTCTCTACCTCAAGATCT 358
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 GCCTCATCAATCTCCTTCTCTTGCTCCTCTTCTTCCTTCTTGTTCTCTACCTCAAGATCT 359
Query 359 CCATGGATTTGCTTCGTTTCTAGGTAAGAGATCTCCAATGGAAGGGTGTTGTGATTTAGA 418
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 360 CCATGGGTTTGCTTCGTTTCTAGGTAAGAGATCTCCAATGGAAGGTTGTTGCGATTTAGA 419
Query 419 AACAGGGAACAATATGAATGGAGAAGAGGATTATTCAGATGATGGGTCACAAATGGGAGA 478
||||| |||||| |||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 420 AACAGTGAACAACATGAATGGTGAAGAAGATTATTCAGATGATGGGTCTCAAATGGGAGA 479
Query 479 GAAGAAGAGGAGATTGAACATGGAACAAGTGAAGACACTAGAGAAGAACTTTGAGCTTGG 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 GAAGAAGAGGAGATTGAACATGGAACAAGTGAAGACATTAGAGAAGAACTTTGAGCTTGG 539
Query 539 AAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAG 599
Query 599 ACAGATCGCGATTTGGTTTCAAAATCGAAGAGCTCGTTGGAAAACAAAGCAGCTAGAGAA 658
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 ACAGATCGCGATTTGGTTCCAAAATCGAAGAGCTCGTTGGAAAACAAAGCAGCTTGAGAA 659
Query 659 AGATTATGATACTCTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGATTATGATACTCTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCA 719
Query 719 AACTCATAATCAGAAACTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AACTCATAATCAGAAACTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGA 779
Query 779 ATCAATAAATCTAAACAAAGAAACTGAAGGATCTTGCAGTAACAGAAGTGATAACAGTTC 838
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 ATCAATAAATCTAAACAAAGAAACTGAAGGATCTTGTAGTAACAGAAGTGATAACAGTTC 839
Query 839 AGATAATCTCAGACTAGATATCTCAACTGCGCCGCCATCAAACGACAGTACATTAACCGG 898
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGATAATCTCAGACTCGATATCTCAACTGCGCCGCCATCAAACGACAGTACATTAACCGG 899
Query 899 TGGCCACCCACCGCCACCACAGACAGTTGGTCGACACTTCTTCCCACCGTCGCCAGCCAC 958
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGGCCAACCACCGCCACCGCAGACAGTTGGTCGACACTTCTTCCCACCGTCGCCAGCCAC 959
Query 959 CGCAACGACAACTACTACAACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGTAT 1018
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGCAACGACAAC-A--ACGACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGTAT 1016
Query 1019 GGTTAAAGAAGAGAATAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGTTT 1078
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGTTAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGTTT 1076
Query 1079 TTGGCCATGGCTTGATCAGCAACAGTACAATTGAAATTGGTCTACCTGttttttttgttt 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1077 TTGGCCATGGCTTGATCAGCAACAGTACAATTGAAATTGGTCTACCTGTTTTTTTT-TTT 1135
Query 1139 ttgt-tttt 1146
|||| ||||
Sbjct 1136 TTGTATTTT 1144
Score = 318 bits (172), Expect = 6e-86
Identities = 192/201 (96%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 1160 ttttttttttttgtatttggaattttGATCAGAAGAACCCATGCATGTTTTCAAAAACTG 1219
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TTTTTTTTTTTTGTATTTTGAATTTTGATCAGAAGAACCCATGCATGTTTTCAAAAACTG 1185
Query 1220 GAATCTATATCATTAGCTCACTTTGAAATCTGCAACCAAACACCACTGAGGTTTTTTGTT 1279
|||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1186 GAATCTAT--CATTAGCTCACTTTGAAATCTGCAACCAAACACCACCGAG-TTTTTTGTT 1242
Query 1280 TACTTTTTGAGTAAATGAGATGTaaaaaaaTGGGTAATATCCATTATATTATATAAAAAA 1339
|||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||
Sbjct 1243 TACTTTTTGAGTAAATGATATGTAAAAAAATGGGTAATCTCAATCATATTATATAAAAAA 1302
Query 1340 TAATATCATTATGGCCCAACA 1360
|||||||||||||||||||||
Sbjct 1303 TAATATCATTATGGCCCAACA 1323
> Ahg472703 jgi|Araly1|472703|fgenesh2_kg.1__2657__AT1G26960.1
Length=1171
Score = 357 bits (193), Expect = 1e-97
Identities = 343/415 (83%), Gaps = 12/415 (3%)
Strand=Plus/Plus
Query 430 ATATGAATGGAGAAGAGGATTATTCAGATGATGGGTCACAA-ATGGGAGAGAAGAAGAGG 488
||||||| ||||| || || |||||||| ||||| || || ||||||||||||||||||
Sbjct 340 ATATGAACGGAGATGAAGAATATTCAGACGATGGATC-TAAGATGGGAGAGAAGAAGAGG 398
Query 489 AGATTGAACATGGAACAAGTGAAGACACTAGAGAAGAACTTTGAGCTTGGAAACAAACTT 548
|||||||||||||||||| ||||| | ||||||||||||||||||||||| || ||||||
Sbjct 399 AGATTGAACATGGAACAACTGAAGGCGCTAGAGAAGAACTTTGAGCTTGGTAATAAACTT 458
Query 549 GAACCAGAGAGGAAAAT--GCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAGACAGATCG 606
||| |||| | ||||| | |||| ||||||||||| || |||||||| ||||| || |
Sbjct 459 GAATCAGATCG-AAAATTAG-AGCTGGCTCGTGCCTTGGGATTGCAACCTAGACAAATTG 516
Query 607 CGATTTGGTTTCAAAATC-GAAGAGCTCGTTGGAAAACAAAGCAGCTAGAGAAAGATTAT 665
| || ||||| ||||| | |||||||||| | ||||| |||||||| |||||||| |||
Sbjct 517 CTATATGGTTCCAAAA-CAGAAGAGCTCGATCTAAAACCAAGCAGCTTGAGAAAGACTAT 575
Query 666 GATACT-CTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCAAACTCA 724
|| | | ||||| || || || || | || | || ||||||||| |||||||||||||
Sbjct 576 GACA-TGCTTAAGCGTCAATTCGAGAGTCTCAGAGATGAAAATGAAGTTCTTCAAACTCA 634
Query 725 TAATCAGAAA-CTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGAATCAA 783
||||| ||| || |||||| || |||||| ||| |||| |||||||| || ||||||||
Sbjct 635 AAATCA-AAAGCTTCAAGCTCAGGTAATGGCATTGAAAATCAGAGAACCAATAGAATCAA 693
Query 784 TAAATCTAAACAAAGAAACTGAAGGATCTTGCAGTAACAGAAGTGATAACAGTTC 838
| ||||| ||||||||||| |||||||| || ||| |||||||||| |||| |||
Sbjct 694 TCAATCTGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTC 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5