BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69790.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476109 jgi|Araly1|476109|fgenesh2_kg.2__1239__AT1G69790.1 2385 0.0
Ahg472702 jgi|Araly1|472702|fgenesh2_kg.1__2656__AT1G26970.1 712 0.0
> Ahg476109 jgi|Araly1|476109|fgenesh2_kg.2__1239__AT1G69790.1
Length=1573
Score = 2385 bits (1291), Expect = 0.0
Identities = 1497/1593 (94%), Gaps = 28/1593 (2%)
Strand=Plus/Plus
Query 1 GGTGCACACGTTTTTGGTGTTGACCTACGACAACGACAACGACAGACAAAAATTTATCAT 60
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 1 GGTGCACACGTTTTTGGTGTTGACCAACGACAACGACAACGACAGACAAAATTTTATTAT 60
Query 61 CATACAAAACctttctttgtctttatctcatt-ttgttttcttaatatcctctgtttctt 119
|||||||||||||| |||||||||||||| || || |||||| |||||||||||||||||
Sbjct 61 CATACAAAACCTTTGTTTGTCTTTATCTCGTTATT-TTTTCTAAATATCCTCTGTTTCTT 119
Query 120 cttctaattttctctgtttttattccttctacttctGAGATCCATAAAGATTCATCTCTT 179
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 120 CTTCTAATTTTCTCTGTTTTGATTCCTTCTGCTTCTGAGATCCATAAAGATTCATCTCTT 179
Query 180 ATTA-CTTCATCGGAAAAGAAACCTCGATTTCAGTTTTCTTGATCTCTCTAATGGGGAAT 238
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 -TTAGCTTCACCGGACCAGAAACCTCGATTTCAGTTTTCTTGATCTCTCTAATGGGGAAT 238
Query 239 TGCTTGGACTCTTCTGCAAGAGTAGGTAATAGAGAAAGCACTTTTGGAGGGTCATCAAGA 298
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 239 TGCTTGGACTCTTCTGCAAGAGTAGATAACAGAGAAAGCACTTTTGGAGGGTCATCAAGA 298
Query 299 ATTTCCCGC-AAACCGAATCAGTCATCTCGACTCTCAAGTCTCACCATACCTTCTTATAG 357
||||||| | |||| |||||||||||| | || ||||| ||||||||||||||||||||
Sbjct 299 ATTTCCC-CTAAACTAAATCAGTCATCTTGTCTTTCAAGCCTCACCATACCTTCTTATAG 357
Query 358 CAACAATAGCTTCACTACTTCATCATGGTCAAATTTGACACCTAGAAGTGAAGGAGAGCT 417
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 358 CAACAATAGCTTCACTACTTCATCATGGTCAAATCTGACACCAAGAAGTGAAGGAGAGCT 417
Query 418 CTTACCATCTCCAACACTAAAGGCCTTTACATTCAACGAGCTAAAAACCGCTACTAGAAA 477
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 CTTACCATCTCCGACACTAAAGGCTTTTACATTCAACGAGCTAAAAACCGCTACTAGAAA 477
Query 478 CTTCAAGCCGAATAGTATGATTGGTGAAGGCGGTTTTGGTTGTGTCTATAAGGGTTGGAT 537
||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 478 CTTCAAGCCTAATAGTATGATCGGTGAAGGCGGTTTTGGTTATGTCTATAAAGGTTGGAT 537
Query 538 CGGTGAACGCTCGTTGTCACCTTCGAAACCAGGGTCCGGTATGGTTGTTGCAGTCAAGAA 597
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 538 CGGTGAACGCTCGTTATCACCTTCGAAACCAGGGTCTGGTATGGTCGTTGCAGTCAAGAA 597
Query 598 ACTTAAATCAGAAGGGTTTCAAGGACACAAAGAGTGGTTGACTGAGGTTCATTATCTTGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 ACTTAAATCAGAAGGGTTTCAAGGACACAAAGAGTGGTTGACTGAGGTTCACTATCTTGG 657
Query 658 GAGACTTCATCATATGAATCTTGTGAAGCTAATTGGATATTGCTTAGAGGGAGAGAAAAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAGACTTCATCATATGAATCTTGTGAAGCTAATTGGATATTGCTTAGAGGGAGAGAAAAG 717
Query 718 ACTTTTGGTTTACGAGTACATGCCTAAAGGAAGCCTGGAGAACCATCTATTTCGAAGAGG 777
|||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 718 ACTTTTGGTTTACGAGTACATGCCTAAAGGAAGCTTGGAGAATCATCTGTTTCGAAGAGG 777
Query 778 CGCAGAGCCAATTCCGTGGAAGACTAGGATGAAAGTAGCTTTTAGCGCAGCGAGAGGACT 837
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 778 CGCAGAGCCAATTCCGTGGAAGACTAGGATGAAAGTGGCGTTTAGCGCAGCGAGAGGACT 837
Query 838 AT-CTTTCCTCCACGAAGCTAAAGTCATATACCGAGACTTCAAGGCCTCTAATATTCTAC 896
| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 -TGCTTTCCTTCACGAAGCTAAAGTCATATACCGAGACTTCAAGGCCTCCAATATTCTAC 896
Query 897 TTGATGTGGATTTCAATGCAAAGCTATCTGATTTTGGGTTGGCAAAAGCTGGACCAACAG 956
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 897 TTGATGTGGATTTCAATGCAAAGCTATCTGATTTCGGATTGGCAAAAGCTGGACCAACAG 956
Query 957 GAGATAGAACGCATGTGACAACTCAAGTGATAGGCACACAAGGGTACGCAGCTCCGGAAT 1016
|||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 957 GAGATAGAACCCATGTCACAACTCAAGTGATAGGCACACAAGGCTACGCCGCTCCGGAAT 1016
Query 1017 ACATAGCAACCGGCCGGTTAACCTCCAAGAGTGATGTCTATAGCTTTGGAGTGGTGTTGC 1076
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1017 ACATAGCAACCGGCCGGTTAACAGCCAAGAGTGATGTCTATAGCTTTGGAGTGGTGCTGC 1076
Query 1077 TCGAACTACTCTCGGGTCGTCCCACCCTAGACAAATCGAAAGTAGGAGTGGAACGTAACC 1136
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 TTGAACTACTCTCGGGACGTCCCACCCTAGACAAATCGAAAGTAGGAGTGGAACGTAATC 1136
Query 1137 TGGTGGATTGGGCAATACCTTATTTGGTGGACAGAAGAAAAGTGTTTAGAATAATGGACA 1196
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1137 TGGTGGATTGGGCAATACCTTATTTGGTGGACAGAAGAAAAATGTTTAGAATAATGGACA 1196
Query 1197 CAAAGCTTGGAGGACAGTACCCTCACAAAGGGGCTTGTGCAGCTGCCAACATCGCATTGC 1256
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1197 CAAAGCTTGGAGGACAGTACCCTCACAAAGGGGCTTGCGCAGCTGCTAACATCGCATTGC 1256
Query 1257 GGTGTCTCAATACCGAACCTAAGCTCAGACCGGATATGGCTGATGTCTTATCCACTTTAC 1316
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1257 GGTGTCTCAACACCGAACCTAAGCTGAGACCGGATATGGCTGATGTCTTATCCACTTTAC 1316
Query 1317 AACAGCTTGAGACTTCTTCAAAAAAGATGGGTTCTACTCAAAATATAGTCATGTCTCCTT 1376
||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1317 AACAGCTTGAGACTTCTTCGAAAAAGACGGGTTCTACTCCAAATATAGTCATGTCTCCTT 1376
Query 1377 CATCTCATATGTCGTAGTATAACAAGGTTCGAGATATTTCTGCGTTTAAGGTGGGAAGTA 1436
||||||||||||||||| ||||||||| ||||||||| || | | ||| | | |
Sbjct 1377 CATCTCATATGTCGTAGAATAACAAGGGTCGAGATAT--CT-C-T--AAG-T---A-G-- 1423
Query 1437 GGAGATCTAAGGA-CCCTTTTGAGTCTGATTATATACTTTTGC-ATAGTGTGTT-AATAG 1493
| |||| || | | ||||||||||||||| ||||||||||||| | |||||||| |||||
Sbjct 1424 G-AGATTTA-GCAACCCTTTTGAGTCTGAGTATATACTTTTGCCA-AGTGTGTTGAATAG 1480
Query 1494 TTTGGTACTTTCTCTTAAGATTATAGAATGTCTGGTTG-AAATGTAGATGTATATATTAT 1552
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1481 TTTTGTACTTTCTCCTAAGATTATAGAATGTCTGGTTGGAAATGTAGATGTATATATGAT 1540
Query 1553 GGAAAAGCCAATGTCATTTAATATCTTGAATTC 1585
|||||||| ||||||||||||||| ||||||||
Sbjct 1541 GGAAAAGCTAATGTCATTTAATATTTTGAATTC 1573
> Ahg472702 jgi|Araly1|472702|fgenesh2_kg.1__2656__AT1G26970.1
Length=1295
Score = 712 bits (385), Expect = 0.0
Identities = 751/927 (81%), Gaps = 27/927 (3%)
Strand=Plus/Plus
Query 401 AGAAGTGAAGGAGAGCTCTTACCATCTCCAACACTAAAGGCCTTTACATTCAACGAGCTA 460
||||||||||||||||||||| ||||||| || |||||||| |||||||| |||||||||
Sbjct 169 AGAAGTGAAGGAGAGCTCTTAGCATCTCCCACGCTAAAGGCGTTTACATTTAACGAGCTA 228
Query 461 AAAACCGCTACTAGAAACTTCA-AGCCGAATAGTATGATTGGTGAAGGCGGTTTTGGTTG 519
|| || || ||||| || |||| | ||| ||||| | ||||||||||||||||||||||
Sbjct 229 AAGACAGCCACTAGGAATTTCAGACCCG-ATAGTGTTATTGGTGAAGGCGGTTTTGGTTA 287
Query 520 TGTCTATAAGGGTTGGATCGGTGAACGCTCGTTGTCACCTTCGAAACCAGGGTCCGGTAT 579
|||||| || || ||||||| ||||||| | || || ||||| ||||| ||||| || ||
Sbjct 288 TGTCTACAAAGGATGGATCGATGAACGCACTTTATCGCCTTCAAAACCGGGGTCAGGCAT 347
Query 580 GGTTGTTGCAGTCAAGAAA-CTTAAAT-CAGAAGGGTTTCAAGGACACAAAG-AGTGGTT 636
||| ||||| ||||| ||| ||| ||| ||| ||||||||||||||| | | |||||||
Sbjct 348 GGTCGTTGCTGTCAA-AAAGCTT-AATGAAGACGGGTTTCAAGGACAC-AGGCAGTGGTT 404
Query 637 GACTGAGGTTCATTATCTTGGGAGACTTCATCATATGAATCTTGTGAAGCTAATTGGATA 696
| | |||||| ||| ||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 405 GGCGGAGGTTGATTGTCTTGGGAGGCTTCACCATATCAATCTTGTGAAACTAATTGGATA 464
Query 697 TTGCTTAGAGGGAGA---GAAAAGACTTTTGGTTTACGAGTACATGCCTAAA-GGAAGCC 752
|||| | |||| || | | |||||||| || ||||||||||| ||| ||||||
Sbjct 465 CTGCTCAAAGGGTGATTTTATTCGGCTTTTGGTGTATGAGTACATGCC-AAAGGGAAGCT 523
Query 753 TGGAGAACCATCTATTTCGAAGAGGCGCAGAGCCAATTCCGTGGAAGACTAGGATGAAAG 812
||||||| ||||| ||| || | || |||||||| ||||||||||| || ||||||||||
Sbjct 524 TGGAGAATCATCTCTTTAGACGTGGGGCAGAGCCTATTCCGTGGAAAACAAGGATGAAAG 583
Query 813 TAGCTTTTAGCGCAGCGAGAGGACTAT-CTTTCCTCCACGAAGCTAAAGTCATATACCGA 871
| || |||| || |||||||| || | |||| || || || ||| |||||||||| ||
Sbjct 584 TGGCGATTAGTGCGGCGAGAGGGCT-TGCTTTTCTTCATGACGCTCAAGTCATATATAGA 642
Query 872 GACTTCAAGGCCTCTAATATTCTACTTGATGT-GGATTTCAATGCAAAGCTATCTGATTT 930
|||||||||||||| |||||| |||||||| | ||| |||||||||||||| || |||||
Sbjct 643 GACTTCAAGGCCTCCAATATTTTACTTGAT-TCGGAATTCAATGCAAAGCTTTCAGATTT 701
Query 931 TGGGTTGGCAAAAGCT-GGACCAACAGGAGATAGAACGCATGTGA-CAACTCAAGTGATA 988
||| ||||| |||| | |||||||| ||||| ||||| || || | |||| ||||||||
Sbjct 702 TGGATTGGCGAAAG-TAGGACCAACCGGAGACAGAACACACGT-ATCAACCCAAGTGATG 759
Query 989 GGCACACAAGGGTACGCAGCTCCGGAATACATAGCAACCGGCCGGTTAACCTCCAAGAGT 1048
|| || ||||| || ||||| || |||||| | || || || ||| |||| |||| ||
Sbjct 760 GGAACTCAAGGCTATGCAGCACCTGAATACGTTGCCACTGGTCGGATAACGGCCAAAAGC 819
Query 1049 GATGTCTATAGCTTTGGAGTGGTGTTGCTCGAACTACTCTCGGGTCGTCCCACCCTAGAC 1108
|| ||||| ||||| || ||||| |||||||| |||| ||||| ||||| || |||||
Sbjct 820 GACGTCTACAGCTTCGGTGTGGTCTTGCTCGAGTTACTGTCGGGACGTCCGTCCATAGAC 879
Query 1109 AAATCGAAAGTAGGAGTGGAACGTAACCTGGTGGATTGGGCAATACCTTATTT-GGTGGA 1167
||||||||||||||||||||||| || ||||| |||||| ||| |||||| || || | |
Sbjct 880 AAATCGAAAGTAGGAGTGGAACGAAATCTGGTTGATTGGTCAAGACCTTACTTAGGAG-A 938
Query 1168 CAGAAGAAAAGTGTTTAGAATAATGGACACAAAGCTTGGAGGACAGTACCCTCACAAAGG 1227
|| ||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||
Sbjct 939 CAAAAGGAAAGTGTTTAGGATAATGGACACAAAACTTGGGGGACAGTATCCTCACAAAGG 998
Query 1228 GGCTTGTGCAGCTGCCAACA-TCGCATTGCGGTGTCTCAAT-ACCGAACCTAAGCTCAGA 1285
|||||| || || || | | || |||| ||||| ||| | ||||||||| | ||
Sbjct 999 AGCTTGTTTGGCCGCTAATACT-GCGTTGCAATGTCTTAATCAA-GAACCTAAGTTGAGG 1056
Query 1286 CCGGATATGGCTGATGTCTTATCCACT 1312
|| | ||| |||||| ||||| |||
Sbjct 1057 CCAAAGATGTATGATGTGTTATCTACT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5