BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69800.2
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476111 jgi|Araly1|476111|fgenesh2_kg.2__1241__AT1G69800.1 2303 0.0
> Ahg476111 jgi|Araly1|476111|fgenesh2_kg.2__1241__AT1G69800.1
Length=1610
Score = 2303 bits (1247), Expect = 0.0
Identities = 1395/1466 (95%), Gaps = 11/1466 (1%)
Strand=Plus/Plus
Query 71 AAATTGAGCCGGTATCAAGACATGGCGGGAAGTGAAGCGGTAGAAGATAAGGAGATAAAA 130
||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 148 AAATTGAATCGGTATCAAGATATGGCGGGAAGTGAACCGGTAGAAGATAAGGAGATAAAA 207
Query 131 TCGGCGGTTTCAAGCTGTGAAGCGTATTTCGAGAAAGTACAATCAAGGAAGAATCTACCC 190
||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 208 TCGGCTGTTTCGAGCTGTGAGGCGTATTTCGACAAAGTACAATCAAGGAAGAATCTTCCC 267
Query 191 AAATCTCTTCAAGAAACCCTAAACTCTGCTTTCGCCGGAATCCCAGTCTCCTCCTTCCCT 250
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 268 AAATCTCTTCAAGAAACCCTAAACTCTGCTTTCGCCGGAATCCCCGTCTCCTCCTTTCCT 327
Query 251 CAAGTCCCCGGCGGCAGAGTGATAGAGATTCAAGCGGAAACACCTGTATCAGAAGCAGTA 310
|||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 328 CAAGTCCCCGGCGGTAGAGTGATAGAGATACCAGCGGAAACACCTGTATCAGAAGCAGTA 387
Query 311 AAGATCTTATCAGATAGCAAGATTCTATCAGCTCCTGTGATTAACACAGATCACGAGAGT 370
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 AAGATTTTATCAGACAGCAAGATTCTATCAGCTCCTGTGATTAACACAGATCACGAGAGT 447
Query 371 TCTTTAGATTGGAGAGAAAGATATTTAGGAATCATTGACTACTCTTCAATCATCTTATGG 430
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 448 TCCTTAGATTGGAGAGAAAGATATTTAGGAATCATTGATTACTCTTCAATCATCTTATGG 507
Query 431 GTGCTAGAGAGTGCTGAACTCGCTGCAATCGCGTTGTCCGCTACGTCAGCAACTGCTGCT 490
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 508 GTGTTAGAGAGTGCTGAACTCGCTGCAATCGCGTTGTCCGCTACGTCAGCAACCGCTGCT 567
Query 491 GGTGTTGGTGCTGGAGCTGTTGGAGCTCTTGGTGTTGCAGCGCTCGGGATGACCGGTCCG 550
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 568 GGTGTTGGTGCTGGAGCTGTTGGAGCTCTTGGTGTTGCAGCGCTCGGGGTGACCGGTCCG 627
Query 551 GTTGCTGCTGCGGGGCTAGCCGCAGCTGCGGTTGGAGCCGCGGTTGCTGGTGGTGTTGCA 610
||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 628 GTTGCTGTTGCAGGGCTAGCGGCGGCTGCGGTTGGAGCCGCGGTTGCTGGTGGTGTTGCA 687
Query 611 GCTGAACGTGGGATTGGAAAAGATGCTCCAACTGCTGCTGATAAGTTGGGGAAAGATTTC 670
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 688 GCTGACCGTGGGATTGGGAAAGATGCTCCAACTGCTGCTGATAATTTAGGGAAAGATTTC 747
Query 671 TATGAAGTTATTCTTCAAGAAGAGCCTTTTAAATCAACCACTGTTAGAACAATACTTAAG 730
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TATCAAGTCATTCTTCAAGAAGAGCCTTTTAAATCAACCACTGTTAGAACAATACTTAAG 807
Query 731 TCGTTTAGATGGGCTCCTTTTCTTCCGGTTTCAACAGAGAGTTCGATGTTGAGTGTTATG 790
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 808 TCGTTTAGATGGGCTCCTTTTCTTCCGGTTTCAACTGAGAGTTCGATGTTGAGTGTTATG 867
Query 791 TTGTTACTCTCGAAATATCGGTTAAGAAATGTGCCGGTTATTAAAACAGGAGAACCGGAT 850
||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 868 TTGTTACTCTCGAAATACCGGTTAAGGAATGTGCCGGTTATTAAAGCAGGAGAACCGGAT 927
Query 851 ATCAAGAACTACGTTACTCAATCTGCAGTTGTTCATGGTCTTGAAGGTTGCAAAGGTAGA 910
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 ATCAAGAACTATGTTACTCAATCTGCAGTTGTTCATGGTCTTGAAGGTTGCAAAGGTAGA 987
Query 911 GATTGGTTTGATCACATTTCCGCTCTCCCGATTTCTGATCTCGGCCTCCCGTTT-ATGTC 969
|||||||||||||||||||| |||||| ||||||||||||| ||||| || ||| |||||
Sbjct 988 GATTGGTTTGATCACATTTCTGCTCTCTCGATTTCTGATCTTGGCCTGCC-TTTCATGTC 1046
Query 970 ACCCAATGAGGTTATTAGCATTGAGAGTGAGGAACTTATCCTTGAAGCATTTAAAAGGAT 1029
|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 1047 ACCCAATGAGGTTATTAGCATTGAGAGTGAAGAACTTATCCTTGAAGCATTCAAGCGGAT 1106
Query 1030 GAGAGACAACAACATTGGTGGTCTCCCTGTAGTTGAAGGGTTGAATAAGAAGATTGTTGG 1089
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GAGAGACAATAACATTGGTGGTCTCCCTGTAGTTGAAGGGTTGAATAAGAAGATTGTTGG 1166
Query 1090 TAACATTAGCATGAGAGACATTAGATATTTGCTTTTACAACCTGAAGTCTTTTCCAATTT 1149
||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct 1167 TAACATTAGCATGAGAGACATCAGATATTTGCTTCTACAACCTGAAGTCTTCTCCAATTT 1226
Query 1150 CAGACAACTCACGGTGAAGAGTTTCGCGACAAAGATTGCTACAGC-GGGAGAGGAATACG 1208
|||||||||||| ||||||||||| ||||||||||||||||| || ||| |||||||| |
Sbjct 1227 CAGACAACTCACAGTGAAGAGTTTTGCGACAAAGATTGCTACCGCAGGG-GAGGAATATG 1285
Query 1209 GTTTAGCGATTCCTGCAATAACTTGTAGGCCTGATTCGACTTTAGGGAGTGTTATAAACA 1268
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1286 GTTTAGCGATTCCTGCGATAACTTGTAGGCCTGATTCGACTTTGGGGAGTGTTATAAACA 1345
Query 1269 GTTTGGCTTCGAGGTCGGTGCATCGGGTTTATGTAGCGGCTGGAGATGAGAATGAGCTTT 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 GTTTGGCTTCGAGGTCGGTGCATCGGGTTTATGTAGCGGCTGGAGATGAGAATGAGCTTT 1405
Query 1329 ATGGGGTTATAACACTGAGGGATGTGATCTCTTGTTTCGTATCAGAACCTCCAAATTACT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1406 ATGGGGTTATAACACTGAGGGATGTGATCTCTTGTTTCGTATCAGAACCTCCAAACTACT 1465
Query 1389 TTGAGAACTGTCTCGGTTTCTCGGTTAAGGAAATGCTTAACCGATGATCTCTTGTTTCTC 1448
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1466 TTGAGAACTGTCTCGGGTTCTCGGTTAAAGAAATGCTTAACCGATGATCTCTTGTTTCTC 1525
Query 1449 AGCtttttttt--G---G-CTTTGTTGTTTGTTCTTTCTTGGTTTAGATTTCTGAAGTTG 1502
||||||||||| | | ||||||||||||||| ||||||| ||||||| |||||||||
Sbjct 1526 AGCTTTTTTTTTTGTTTGTCTTTGTTGTTTGTTCCTTCTTGGGTTAGATT-CTGAAGTTG 1584
Query 1503 TTGTCTTTATATCTAATTTGTAACCA 1528
|| |||||||||||||||||||||||
Sbjct 1585 TTATCTTTATATCTAATTTGTAACCA 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5