BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69810.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339216 jgi|Araly1|339216|fgenesh1_pg.C_scaffold_2001315 1681 0.0
> Ahg339216 jgi|Araly1|339216|fgenesh1_pg.C_scaffold_2001315
Length=1149
Score = 1681 bits (910), Expect = 0.0
Identities = 1086/1168 (93%), Gaps = 23/1168 (2%)
Strand=Plus/Plus
Query 3 ATGATCAAAGAGGAGACCGTTTCATACTTCCAA-ACTTTCGATGGTGTTATGGCAGAATC 61
|||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||
Sbjct 1 ATGATCAAAGAGGAGACCATTTCATGCTT-CAATCCTTTCGATGGTGTTATGGCAGAATC 59
Query 62 TGACAAGGAAGAGGAGCTTGATGCAACAAAAGCAAAGGTGGAGAAAGTTCGGGAAGAAAA 121
||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct 60 TGACAAGGAAGAGGAGCTTGATGTAACAAAAGCGAAGGTGGAGAAAGTTAGGGAAGAAAA 119
Query 122 TGAGAAATTAAAGCTCTTACTCTCTACGATTCTTAATAATTACAACTCTCTTCAAATGCA 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAGAAATTAAAGCTCTTACTGTCTACGATTCTTAATAATTACAACTCTCTTCAAATGCA 179
Query 182 AGTCTCTAAAGTTCTCGGACAACAACAAGGAGCTTCGTCTATGGAGCTAGACCACATTGA 241
|||||||| |||||| || |||||||| |||| | |||||||||||||| || | ||
Sbjct 180 TGTCTCTAACGTTCTCCGAGAACAACAAAGAGC-T--TCTATGGAGCTAGATCA-A--GA 233
Query 242 TCGTCAAGATGAAAATAACGACTATGATGTGGATATATCACTTAGGCTTGGAAGATCAGA 301
||| || ||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 234 ----CAA-AT----ATAACGATTTTGATGTAGATATATCACTTAGGCTTGGAAGATCAGA 284
Query 302 GCAAAAGATCTCTAAAAAGGAGGAAAATAAGGTGGACAAGATTTCTACTAAGAACGTAGA 361
||||||||||||||||||||||| || ||||||||||||||||||| | ||||| |||
Sbjct 285 GCAAAAGATCTCTAAAAAGGAGG--AA-AAGGTGGACAAGATTTCTAATGAGAACAAAGA 341
Query 362 GGAGTCAAAAGATAAAAGATCTGCACTGGGTTTTGGATTTCAGATTCAAAGCTATGAAGC 421
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 342 GGAGTCAAAAGATAAAAGATCTGCACTGGGTTTAGGATTTCAGATTCAAAGTTATGAGGC 401
Query 422 CTCGAAACTAGATGATCTTTGTAGGCAGGTTAAGCTTGCAAACGCTGAAAATAAATGTGT 481
|| |||| |||||||||||||||| ||||||||| ||||||||| || ||||| ||| |
Sbjct 402 CTTGAAATTAGATGATCTTTGTAGACAGGTTAAGAATGCAAACGCAGAGAATAAGTGTTT 461
Query 482 ATCTTCGAGGAAAGATGTCAAATCAGTTAGAAATG-AAA--ACCATCAAGATGTTTTGGA 538
|||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||
Sbjct 462 ATCTTCGAGGAAAGATGTCAAAACAGTTAGAAATGAAAATCACCATCAAGATGTTTTGGA 521
Query 539 GGAGCATGAACAAACAGGTTTGAAGAAAACTAGGGTTTGTGTTAAAGCATCATGTGAAGA 598
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 AGAGCATGGGCAAGCAGGTTTGAAGAAAACTAGGGTTTGTGTTAAAGCATCATGTGAAGA 581
Query 599 CCCATCAATAAACGACGGTTGCCAGTGGAGGAAATATGGTCAAAAGACTGCGAAAACCAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CCCATCAATAAACGACGGTTGCCAGTGGAGGAAATATGGTCAAAAGACTGCGAAAACCAA 641
Query 659 TCCTCTCCCACGAGCCTATTACCGTTGCTCCATGTCGTCAAATTGTCCCGTTAGAAAACA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TCCTCTCCCACGAGCCTATTACCGTTGCTCCATGTCGTCAAATTGTCCCGTTAGAAAACA 701
Query 719 GGTGCAAAGATGTGGAGAAGAAGAAACCTCCGCTTTTATGACAACGTACGAAGGAAACCA 778
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 702 GGTGCAAAGATGCGGAGAAGAAGAAACATCCGCTTTTATGACAACATACGAAGGAAACCA 761
Query 779 TGACCATCCTCTCCCCATGGAAGCAAGCCACATGGCAGCTGGAACTTCCGCGGCTGCCTC 838
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 762 TGACCATCCTCTTCCCATGGAAGCAACCCACATGGCAGCTGGAACTTCCGCGGCTGCCTC 821
Query 839 CTTATTACAATCTGGctcctcctcttcctcctcctccacctcAGCGAGTCTAAGCTATTT 898
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 822 CTTATTACAATCTGGCTCCTCCTCCTCCTCCTCATCCACCTCCGCGAGTCTAAGCTATTT 881
Query 899 CTTCCCTTTTCACCACTTCTCTATCTCCACCACTAACTCGCACCCGACTGTAACATTGGA 958
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 882 CTTCCCTTTTCACCACTTCTCTATCTCCACAACTAACTCCCACCCGACCGTAACATTGGA 941
Query 959 CCTCACACGACCAAACTATCCCAATCAGTTACCAGACGACTACCCTCTATCGTCCTCCTC 1018
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 942 CCTCACACGACCAAACTATCCCAATCAGTTACCAGACGACTATCCTCTATCGTCCTCTTC 1001
Query 1019 TTTCAGTCTCAACTTTTCCTCTCCAGATCCTCCACCTCCATCATCGCATGACCACACCTT 1078
||||||||||||||| |||||||| ||||||||||||| ||||||||| || |||||||
Sbjct 1002 TTTCAGTCTCAACTTCTCCTCTCCTGATCCTCCACCTCAATCATCGCACGATAACACCTT 1061
Query 1079 GAACTTTAGTGGCTTGCGAACACAAGCTCCGTTGAGTACAGATTCATTATTGGCCCGTTA 1138
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1062 GAACTTTAGTGGCTTGCGAACACAAGCTCCTTTGAGTACAGATTCCTTATTGGCCCGTTA 1121
Query 1139 TCGAACGAGACTTTCCGGACAGCAATAA 1166
|||||||||||||||||||||||| |||
Sbjct 1122 TCGAACGAGACTTTCCGGACAGCAGTAA 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5