BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69825.1

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315984 jgi|Araly1|315984|fgenesh1_pm.C_scaffold_2001017           327    1e-89


> Ahg315984 jgi|Araly1|315984|fgenesh1_pm.C_scaffold_2001017
Length=222

 Score =  327 bits (177),  Expect = 1e-89
 Identities = 207/222 (93%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  1    ATGGCATCTAACAAAGTCTCATTCATCTTTATTCTTTTTCTATGTGTTCTCTCAACAGCA  60
            |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||
Sbjct  1    ATGGCATCTAACAAAGTCTCATTCTTCTTGATTCTTTTTCTATGTGTGCTCTCAACCGCA  60

Query  61   GAGTTTGGAGAAGCACAAAACCCAAGGGGAAGAAAATGCGAAGATCCAAACGGTGTAGAC  120
            || ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  61   GATTTTGGAGAAGCACAAAACCCAACAGGAAGAAAATGCGAAGATCCAAACGGTGTAGAC  120

Query  121  CAAAAAGCGAAATGCTATATTTACTGTAATGAACAAGGTTTTCTCGGGGGTTCTTGTCAA  180
             |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAAAAAGCGGAATGTTATATTTACTGTAATGAACAAGGTTTTCTCGGGGGTTCTTGTCAA  180

Query  181  GGCTACACCAATCACTATATGTGTGAGTGTTATGTAGGATAA  222
            |||||||  ||||| ||| ||||||| |||||||||||||||
Sbjct  181  GGCTACAAAAATCATTATCTGTGTGAATGTTATGTAGGATAA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7599463939


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5