BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69828.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315985 jgi|Araly1|315985|fgenesh1_pm.C_scaffold_2001018           340    2e-93


> Ahg315985 jgi|Araly1|315985|fgenesh1_pm.C_scaffold_2001018
Length=222

 Score =  340 bits (184),  Expect = 2e-93
 Identities = 213/226 (94%), Gaps = 5/226 (2%)
 Strand=Plus/Plus

Query  1    ATGGCATCTAACAAAGTCTCATTTTTCTTGGTTCTTTGTCTATGTATTCTCTTAGCCGGA  60
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  1    ATGGAATCTAACAAAGTCTCATTTTTCTTGGTTCTTTGTCTATGTATTCTCTCAGGCGGA  60

Query  61   GAGTGTATAGAATCACCAATTTTCACCGGAAACAAATGCTCAGATCCAACCGGCATGGAC  120
            ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct  61   GAGTGTATAGAATCACCAATTTTTACCGGAAACAAATGCTCCGATCCAACCGGCTTGGAC  120

Query  121  AAAGATGGAAAATGTCTTGATTACTGTCATGCTCAAGGTTATCCCGGTGGTTCTTGT-AT  179
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | 
Sbjct  121  AAAGATGGAAAATGTCTTGATTACTGTCATGCTCAAGGTTATCCTGGTGGTTCTTGTGA-  179

Query  180  AGGCTTCATCGATCAAGGTTATATGTGTGTATGTAAAGTAGGATAA  225
            |||||||| ||||||   ||||||||||||||||||||||||||||
Sbjct  180  AGGCTTCACCGATCA---TTATATGTGTGTATGTAAAGTAGGATAA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5