BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69828.1 Length=225 Score E Sequences producing significant alignments: (Bits) Value Ahg315985 jgi|Araly1|315985|fgenesh1_pm.C_scaffold_2001018 340 2e-93 > Ahg315985 jgi|Araly1|315985|fgenesh1_pm.C_scaffold_2001018 Length=222 Score = 340 bits (184), Expect = 2e-93 Identities = 213/226 (94%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 1 ATGGCATCTAACAAAGTCTCATTTTTCTTGGTTCTTTGTCTATGTATTCTCTTAGCCGGA 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1 ATGGAATCTAACAAAGTCTCATTTTTCTTGGTTCTTTGTCTATGTATTCTCTCAGGCGGA 60 Query 61 GAGTGTATAGAATCACCAATTTTCACCGGAAACAAATGCTCAGATCCAACCGGCATGGAC 120 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| Sbjct 61 GAGTGTATAGAATCACCAATTTTTACCGGAAACAAATGCTCCGATCCAACCGGCTTGGAC 120 Query 121 AAAGATGGAAAATGTCTTGATTACTGTCATGCTCAAGGTTATCCCGGTGGTTCTTGT-AT 179 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 121 AAAGATGGAAAATGTCTTGATTACTGTCATGCTCAAGGTTATCCTGGTGGTTCTTGTGA- 179 Query 180 AGGCTTCATCGATCAAGGTTATATGTGTGTATGTAAAGTAGGATAA 225 |||||||| |||||| |||||||||||||||||||||||||||| Sbjct 180 AGGCTTCACCGATCA---TTATATGTGTGTATGTAAAGTAGGATAA 222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7714028722 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5