BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69830.1
Length=2954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339218 jgi|Araly1|339218|fgenesh1_pg.C_scaffold_2001317 2492 0.0
> Ahg339218 jgi|Araly1|339218|fgenesh1_pg.C_scaffold_2001317
Length=2649
Score = 2492 bits (1349), Expect = 0.0
Identities = 1483/1546 (96%), Gaps = 16/1546 (1%)
Strand=Plus/Plus
Query 1180 GGGGGGAAGACTTCTATGTCCCTTTCCTTACTTCAAGTAGCTCGCCCG-T-----TGAA- 1232
||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1109 GGGGGGAAGACTTCTATGTCCCTTTCCTTACTTCAAGTAGCTCGCTCGTTGGAACTGAAG 1168
Query 1233 --ACTGAAGCTGCCCAAGTGAGTAAACCCAAACGAAAAACAGATAAAGAAGTGTCTGCTA 1290
||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 1169 CTACTGAAGCTGCCCAAGTGAGTAAACACACGCCAAAAACAGATAAAGAAGTGTCTGCTA 1228
Query 1291 GTGGATTTACTAAAGAAATCATCACGGAGATAAGGAACTTGGCAATTGACATTTC-CTCT 1349
||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 1229 GTGGATTTACTGATGAAATCATCACTGAGATAAGGAACTTGGCAATTGACA-TTCACTCT 1287
Query 1350 CATAAGAATCAGAAGACAAACGTCAAAGAAGTGCAGGAAAACATTCTACAAGAAATTGAG 1409
|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1288 CACAAGAATCAGAAGACAAACGTAAAAGAGGTGCAGGAAAACATTCTACAAGAAATCGAG 1347
Query 1410 AAACTGGCTGCGGAGGCATATAGCATATTTAGAAGCACAACTCCAG-CTTTTTCCGAGGA 1468
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 1348 AAACTGGCTGCGGAGGCATATAGCATATTTAGAAGCACAACTCC-GACTTTTTCTGAGGA 1406
Query 1469 AGGTGTTTTAGAAGCAGAAGCTGACAAGCCTGACATTAAAATCTCCTCAGGAACCGGCTC 1528
| || |||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1407 AAGTATTTT---AGCAGAGGCTGAAAAGCCTGACATTAAAATCTCCTCAGGAACCGGCTC 1463
Query 1529 GGGATTTGAGATATTATGCCAAGGTTTCAACTGGGAGTCCAATAAATCTGGGAGATGGTA 1588
|||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 1464 TGGATTTGAGATATTATGCCAGGGATTCAACTGGGAGTCCCATAAATCTGGGAGATGGTA 1523
Query 1589 CTTGGAACTTCAAGAAAAAGCCGATGAGTTAGCTTCACTTGGATTCACTGTTCTGTGGTT 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CTTGGAACTTCAAGAAAAAGCCGATGAGTTAGCTTCACTTGGATTCACTGTTCTGTGGTT 1583
Query 1649 ACCTCCACCGACAGAATCTGTGTCACCTGAAGGGTACATGCCTAAAGACCTGTATAACTT 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 ACCTCCACCGACAGAATCTGTGTCACCTGAAGGGTACATGCCTAAAGACCTGTATAACTT 1643
Query 1709 GAATTCCAGATATGGAACAATTGATGAGCTAAAAGATACAGTGAAGAAATTTCACAAGGT 1768
|||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||
Sbjct 1644 GAATTCCAGATATGGAACTATTGATGAGCTAAAAGATACGGTGAGGAAATTTCACAAGGT 1703
Query 1769 CGGGATCAAAGTTTTAGGCGATGCTGTTCTGAATCACCGCTGTGCACACTTCAAAAATCA 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1704 TGGGATCAAAGTTTTAGGCGATGCTGTTCTGAATCACCGCTGTGCACACTTCAAGAATCA 1763
Query 1829 AAATGGTGTATGGAATCTATTTGGAGGACGTCTAAACTGGGACGATAGGGCAGTAGTTGC 1888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 AAATGGTGTATGGAATCTATTTGGAGGACGTCTAAACTGGGACGATAGGGCAGTAGTTGC 1823
Query 1889 AGATGACCCTCATTTCCAGGGTAGAGGAAACAAGAGCAGTGGAGATAATTTCCATGCTGC 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 AGATGACCCTCATTTCCAGGGTAGAGGAAACAAGAGCAGTGGAGATAATTTCCATGCTGC 1883
Query 1949 TCCAAACATAGATCACTCGCAAGACTTTGTTAGGAAGGATATCAAGGAATGGCTATGCTG 2008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 TCCAAACATAGATCACTCGCAAGACTTTGTTAGGAAGGATATCAAGGAATGGCTATGCTG 1943
Query 2009 GATGATGGAAGAAGTTGGGTATGATGGATGGAGGCTTGACTTTGTAAGAGGGTTCTGGGG 2068
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1944 GATGATGGAAGAAGTTGGGTATGATGGATGGAGGCTTGATTTTGTAAGAGGGTTCTGGGG 2003
Query 2069 AGGTTATGTGAAAGACTATATGGATGCTAGCAAACCGTACTTTGCGGTTGGTGAATATTG 2128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 AGGTTATGTGAAAGACTATATGGATGCTAGCAAACCGTACTTTGCGGTTGGTGAATATTG 2063
Query 2129 GGATTCGTTAAGTTACACGTACGGAGAAATGGACTACAATCAAGACGCACATCGTCAAAG 2188
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2064 GGATTCCCTAAGTTACACGTATGGAGAAATGGACTACAATCAAGACGCACATCGTCAAAG 2123
Query 2189 AATAGTTGACTGGATTAATGCAACTAGTGGAGCTGCTGGTGCATTTGATGTCACTACCAA 2248
|| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2124 GATTGTTGACTGGATCAATGCAACCAGTGGAGCTACTGGTGCATTTGATGTCACTACCAA 2183
Query 2249 AGGAATTCTTCATACGGCGCTTCAAAAATGTGAATATTGGAGACTCTCAGACCCAAAAGG 2308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 AGGAATTCTTCATACGGCGCTTCAAAAATGTGAATATTGGAGACTCTCAGACCCAAAAGG 2243
Query 2309 GAAGCCTCCAGGTGTAGTTGGTTGGTGGCCTTCTCGTGCTGTAACATTCATCGAGAATCA 2368
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2244 GAAGCCTCCAGGTGTAGTTGGATGGTGGCCTTCTCGTGCTGTAACATTCATTGAGAATCA 2303
Query 2369 TGACACTGGCTCTACACAGGGTCATTGGAGATTTCCGGAGGGGAAGGAAATGCAAGGATA 2428
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2304 TGACACTGGCTCTACTCAGGGTCATTGGAGATTTCCGGAGGGGAAGGAAATGCAAGGATA 2363
Query 2429 TGCTTACATCCTAACTCATCCAGGAACACCAGCGGTCTTCTTCGACCATATCTTCTCGGA 2488
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2364 TGCTTACATCCTGACTCATCCAGGAACACCAGCGGTTTTCTTCGACCATATCTTCTCGGA 2423
Query 2489 TTATCATTCCGAGATTGCTGCACTTCTCTCTCTCAGGAACAGACAGAAACTCCACTGTCG 2548
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2424 TTATCATCCCGAGATTGCTGCACTTCTCTCTCTCAGGAACAGACAGAAACTCCACTGTCG 2483
Query 2549 GAGTGAGGTGAATATAGACAAGAGTGAGAGAGATGTGTATGCGGCTATAATAGATGAAAA 2608
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2484 AAGCGAGGTGAATATAGACAAGAGTGAGAGAGATGTGTACGCGGCTATAATAGATGACAA 2543
Query 2609 GGTTGCAATGAAGATCGGACCAGGGCATTATGAACCACCAAACGGATCGCAAAACTGGTC 2668
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2544 GGTTGCAATGAAGATCGGACCAGGGCATTATGAACCACCAAACGGATCTAAAAACTGGTC 2603
Query 2669 TGTAGCCGTTGAAGGCAGAGACTACAAGGTGTGGGAAACATCTTAA 2714
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2604 TGTAGCCGTTGAAGGCAGAGACTACAAGGTGTGGGAAACATCTTAA 2649
Score = 1526 bits (826), Expect = 0.0
Identities = 1026/1116 (92%), Gaps = 39/1116 (3%)
Strand=Plus/Plus
Query 51 ATGTCCACTGTTCCCATTGAGTCTCTTCTCCACCATTCTTATCTTCGTCACAACTCAAAA 110
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTCCACCGTTCCCATTGAGTCTCTTCTCCACCATTCTCGTCTTCGTCACAACTCAAAA 60
Query 111 GTCAATCGCGGAAATAGAAG---CTTCATACCTAT-CTCGTTGAATCTCCGTTCTCATTT 166
|| ||||||||| |||||| |||||||||| | |||||||||||||| |||||||||
Sbjct 61 ATCTATCGCGGAACTAGAAGCTTCTTCATACCT-TGCTCGTTGAATCTCCCTTCTCATTT 119
Query 167 CACTTCTAACAAACTACTACACTCAATTGGAAAAAGTGTCGGTGTTAGCTCGATGAACA- 225
||||| ||||||||||||||||||||| ||| ||| ||||||| |||||||| ||||
Sbjct 120 TACTTCCAACAAACTACTACACTCAATTAGAACAAGCGTCGGTGCTAGCTCGA--AACAT 177
Query 226 A-AA-GTCCCGTCGCCATTCGTGCTACCTCAT-CGGATACTGCCGTCGTGGAAACCGCTC 282
| || || ||||||| ||||| |||| ||| | | ||||||||||||||||||||| |||
Sbjct 178 AGAAGGT-CCGTCGCGATTCGCGCTAGCTC-TCCCGATACTGCCGTCGTGGAAACCTCTC 235
Query 283 AATCGGATGATGTCATCTTCAAGGAAATTTTCCCTGTTCAGCGAATCGAAAAGGCAGAAG 342
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 236 AATCGGATGATGTCATCTTCAAACAAAATTTCCCTGTTCAGCGAATCGAAAAGGCAGAAG 295
Query 343 GAAAGATTTATGTTCGATTAAAGGAAGTGAAGGAGAAGAATTGGGAGCTGAGTGTTGGAT 402
||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 296 GAAAGATATATGTTCGATTGAAGCAAGTGAAGGAGAAGAATTGGGAGCTGAGTGTTGGAA 355
Query 403 GTAGTATACCTGGAAAATGGATTTTGCATTGGGGAGTTTCATATGTGGGTGATACTGGCA 462
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTAGTATTCCTGGAAAATGGATTTTGCATTGGGGAGTTTCATATGTGGGTGATACTGGCA 415
Query 463 GTGAATGGGATCAACCTCCGGAAGATATGAGACCTCCTGGCTCAATTGCCATTAAGGACT 522
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 416 GTGAATGGGATCAACCTCCGGAAGATATGAGACCTCCTGGTTCAGTTGCCATTAAGGACT 475
Query 523 ATGCCATAGAGACACCTTTGAAGAAGTTATCTGAAGGAGATTCtttttttGAAGTTGCTA 582
|||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 476 ATGCTATAGAGACACCGTTAAAGAAGTTATCCGAAGGAGATTCATTTTTTGAAGTTGCTA 535
Query 583 TTAATCTAAATCTGGAGAGTTCTGTAGCAGCTCTCAATTTTGTTTTGAAGGACGAAGAAA 642
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 536 TTAATCTAAATCTGGAGAGTTCAGTTGCAGCTCTCAATTTTGTTTTGAAGGACGAAGAAA 595
Query 643 CTGGGGCGTGGTATCAGCACAAAGGGAGAGACTTTAAGGTTCCTCTTGTAGACGATGTTC 702
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 596 CTGGGGCGTGGTATCAGCACAAAGGGAGAGATTTTAAGGTTCCTCTTGTGGACGATGTTC 655
Query 703 CTGATAATGGAAATTTGATCGGAGCTAAGAAAGGATTTGGTGCCCTTGGGCAGCTTTCAA 762
||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 656 CTGATAATGGAAATTTGATTGGAGCAAAGAAAGGATTTGGTGCCATTGGGCAGCTTTCAA 715
Query 763 ACATCCCTCTCAAACAAGATAAGTCCAGTGCAGA-G---A---------CT-GA-TTC-T 806
|||||||||||||||||||| ||||||||||||| | | | || ||| |
Sbjct 716 ACATCCCTCTCAAACAAGATGAGTCCAGTGCAGAAGTTCAAAAAAAGAGCAAGAGTTCAT 775
Query 807 ---ATT----GAA-GAAAGAAAAGGTCTTCAAGAGTTTTACGAGGAGATGCCAATAAGTA 858
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 CTGATTCTACGAAAGAAAGAAAAAGTCTTCAAGAGTTTTACGAGGAGATGCCAATAAGTA 835
Query 859 AACGTGTTGCCGATGATAACTCAGTCAGTGTCACTGCAAGGAAATGCCCTGAAACATCTA 918
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AATGTGTTGCCGATGATAATTCAGTCAGTGTCACTGCAAGGAAATGCCCTGAAACATCTA 895
Query 919 AGAACATTGTATCAATTGAAACCGATTTACCGGGTGACGTTACTGTCCACTGGGGAGTTT 978
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 896 AGAACATTGTATCAATTGAAACTGATTTACCGGGTGACGTTACTGTCCACTGGGGAGTTT 955
Query 979 GCAAAAACGGCACTAAGAA-ATGGGAAATTCCATCTGAACCTTACCCTGAAGAGACATCT 1037
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GCAAAAACGGCAGTAA-AAGATGGGAAATTCCATCTGAACCTTACCCTGAAGAGACATCT 1014
Query 1038 TTGTTTAAGAACAAGGCATTACGCACTCGTTTACAGCGAAAAGACGATGGAAATGGATCG 1097
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1015 CTGTTCAAGAACAAGGCATTACGCACTCGTTTACAGCGAAAAGACGACGGAAATGGATCG 1074
Query 1098 TTTGGATTATTCTCTCTGGATGGAAAGCTTGAAGGG 1133
|||||||||||||||||||||||||| |||||||||
Sbjct 1075 TTTGGATTATTCTCTCTGGATGGAAACCTTGAAGGG 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111528237360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5