BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69840.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315987 jgi|Araly1|315987|fgenesh1_pm.C_scaffold_2001020 1461 0.0
> Ahg315987 jgi|Araly1|315987|fgenesh1_pm.C_scaffold_2001020
Length=861
Score = 1461 bits (791), Expect = 0.0
Identities = 837/860 (97%), Gaps = 0/860 (0%)
Strand=Plus/Plus
Query 142 ATGGGTCAAGCTTTGGGTTGTATTCAAGTTGATCAGTCGAATGTAGCAATCAAAGAGACT 201
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTCAAGCTTTGGGTTGTATTCAAGTTGATCAATCGAATGTAGCAATCAAAGAGACT 60
Query 202 TTTGGGAAATTCGACGAAGTTCTTGAGCCGGGTTGTCACTGTTTGCCATGGTGTTTGGGA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGGGAAATTCGACGAAGTTCTTGAGCCGGGTTGTCACTGTTTGCCATGGTGTTTGGGA 120
Query 262 AGTCAAGTCGCTGGTCACCTTTCTTTACGTGTTCAACAGCTCGATGTTCGCTGCGAGACA 321
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTCAAGTCGCTGGTCACCTTTCCTTACGTGTTCAACAGCTCGATGTTCGCTGCGAGACA 180
Query 322 AAGACTAAGGATAATGTGTTTGTCACGGTTGTTGCTTCCATTCAATACCGTGCCTTAGCG 381
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAACTAAGGATAATGTGTTTGTCACGGTTGTTGCTTCCATTCAATACCGTGCCTTAGCA 240
Query 382 GAGAGTGCTCAAGATGCTTTTTACAAGCTCAGCAACACGAGGAATCAGATTCAAGCTTAT 441
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GAGAGTGCTCAAGATGCTTTTTACAAGCTCAGCAACACAAGGAATCAGATTCAAGCTTAT 300
Query 442 GTCTTTGATGTGATCCGAGCAAGTGTACCTAAGCTGGATCTAGACTCTACCTTTGAGCAA 501
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 301 GTCTTTGATGTGATCCGAGCAAGTGTACCTAAGCTGGATCTTGACTCAACCTTTGAGCAA 360
Query 502 AAGAATGACATTGCAAAAACCGTTGAGACTGAGCTCGAAAAGGCTATGTCGCATTACGGG 561
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AAGAATGACATTGCAAAAACCGTTGAGACTGAGCTTGAAAAGGCTATGTCGCATTACGGG 420
Query 562 TATGAGATTGTTCAGACACTGATTGTGGATATCGAGCCTGATGTGCACGTCAAGAGGGCA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATGAGATTGTTCAGACACTGATTGTGGATATCGAGCCTGATGTGCACGTCAAGAGGGCA 480
Query 622 ATGAATGAGATCAATGCTGCTTCTAGAATGAGAGAGGCAGCGAGTGAGAAAGCTGAGGCA 681
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGAATGAGATCAATGCCGCTTCTAGAATGAGAGAGGCAGCGAGTGAGAAAGCTGAGGCA 540
Query 682 GAGAAGATTCTGCAGATCAAGCGTGCTGAGGGAGAAGCTGAATCGAAATACCTTTCAGGT 741
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGAAGATTCTGCAGATTAAGAGAGCTGAGGGAGAAGCTGAATCGAAATACCTTTCAGGT 600
Query 742 ATGGGTATAGCCCGTCAGAGACAAGCCATTGTGGACGGTCTGAGAAACAGCGTCCTCGCC 801
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 601 ATGGGTATAGCCCGTCAGAGACAAGCCATTGTTGACGGTCTGAGAAACAGCGTGCTCGCC 660
Query 802 TTCTCCGAGTCTGTTCCAGGAACATCTTCCAAAGACGTGATGGATATGGTTCTTGTGACT 861
|||||||||||||||||||| || ||||||||||| ||||||||||||||||| || |||
Sbjct 661 TTCTCCGAGTCTGTTCCAGGGACGTCTTCCAAAGATGTGATGGATATGGTTCTGGTTACT 720
Query 862 CAGTACTTTGACACATTGAAGGAAATTGGTGCTTCTTCGAAGTCAAACTCGGTGTTCATA 921
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGTACTTCGACACATTGAAGGAAATTGGTGCTTCTTCGAAGTCAAACTCGGTGTTCATA 780
Query 922 CCGCACGGTCCAGGCGCTGTTAGGGACATTGCTTCACAGATCAGGGATGGTCTTCTTCAG 981
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 CCGCACGGTCCAGGTGCTGTTAAGGACATTGCTTCACAGATCAGGGATGGTCTTCTTCAG 840
Query 982 GGTAACTCTGCTGCTGAGTA 1001
|||||||||| |||||||||
Sbjct 841 GGTAACTCTGTTGCTGAGTA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5