BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69850.1
Length=2092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926293 jgi|Araly1|926293|scaffold_201854.1 1495 0.0
Ahg912320 jgi|Araly1|912320|Al_scaffold_0001_2574 499 3e-140
> Ahg926293 jgi|Araly1|926293|scaffold_201854.1
Length=1743
Score = 1495 bits (809), Expect = 0.0
Identities = 902/947 (95%), Gaps = 6/947 (1%)
Strand=Plus/Plus
Query 49 agaaagaaagagagagaatggaagtggaagaagagGTCTCAAGATGGGAAGGCTACGCCG 108
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AGAGAGAGAGAGAGAGAATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG 65
Query 109 ATTGGAGAAACAGAGCAGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCG 168
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 66 ATTGGAGAAACAGAGCCGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCGTTCG 125
Query 169 TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTTGTGC 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 126 TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTCGTGC 185
Query 229 TATACCTAAGAGAATACATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATT 288
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 186 TATACCTAAGAGAGTACATGCACATGTCTCCATCGAAATCGGCAAATGACGTCACCAATT 245
Query 289 TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT 305
Query 349 CCACTTTTCAAATCTTCCTCATCTCAGCTTCCATCGAGTTTTTGGGATTGATCATACTCA 408
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 306 CCACTTTTCAAATCTTCCTCATCTCAGCCTCCATCGAGTTTTTGGGATTGATCATACTCA 365
Query 409 CAATTCAAGCTCGGACACCATCCTTAATGCCTCCATCGTGCGATAGTCCCACATGTGAAG 468
||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |
Sbjct 366 CAATTCAAGCTCGTACACCGTCTTTAATGCCTCCATCGTGTGATAGTCCCACGTGTGAGG 425
Query 469 AAGTGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAGCTTTGGGTG 528
| |||||||||||||||||||||||| | |||||||| ||||||||||| || |||||||
Sbjct 426 AGGTGAGTGGTTCGAAGGCAGCGATGTTCTTCGTGGGATTGTACCTTGTGGCCTTGGGTG 485
Query 529 TGGGAGGGATCAAAGGTTCATTAGCATCTCACGGAGCAGAACAGTTTGATGAGAGTACAC 588
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 486 TGGGAGGGATTAAAGGTTCATTACCATCTCATGGAGCAGAACAGTTTGATGAGAGTACAC 545
Query 589 CTAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG 648
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 546 CTAAAGGTCGGAAACAAAGGTCGACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG 605
Query 649 GAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGGG 708
||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 606 GAGCACTCGTAGCTGTCACGTTTGTGGTTTGGTTAGAGGACAACAAAGGATGGGAATGGG 665
Query 709 GATTCGGTGTTTCTACCATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA 768
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GATTCGGTGTTTCTACAATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA 725
Query 769 GATTTTATAGGAACAAGATTCCATGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTC 828
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 726 GATTTTATAGGAACAAGATTCCATGTGGAAGCCCTCTCACCACAATCTTGAAGGTTCTTC 785
Query 829 TTGCGGCTTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGCGAGTATGT 888
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 786 TTGCGGCCTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGTGAGTATGG 845
Query 889 CCGTGAGTCCCTCAAATCATTGCGTATCAAAGGGGAAAAAAGAAGTTG------AATCAC 942
||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 846 CCGTGAGTCCCTCTAATCATTGTGTACCAAAGGGGAAAAAAGAAGTTGTTGTTGAATCAC 905
Query 943 AAGGAGAATTGGAAAAGCCACGTCAAGAAGAAGCTTTGCCTCCTCGG 989
||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 906 AAGGAGAATTGGAAAAGCCGCGTCAAGAAGAAGCCGTGCCTCCTCGG 952
Score = 1208 bits (654), Expect = 0.0
Identities = 748/794 (94%), Gaps = 3/794 (0%)
Strand=Plus/Plus
Query 1051 GATTGTTAGAATGCACAGTCCAACAAGTG-GAAGATGTGAAGATTGTCTTGAAAATGCTT 1109
||||||||||||||||||||||||||||| | ||| |||||| ||||| |||||||||||
Sbjct 952 GATTGTTAGAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTT 1009
Query 1110 CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC 1069
Query 1170 GTCCAACAAGCTGCTTCCATGAACACAAAGATAGGAAGCCTAAAGATACCTCCAGCTTCC 1229
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1070 GTCCAACAAGCTGCTTCTATGAACACAAAGATAGGAAGCCTAAAGATTCCTCCAGCTTCC 1129
Query 1230 TTACCGATCTTCCCCGTCGTTTTCATAATGATCCTCGCACCTATCTACGACCATCTCATT 1289
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1130 TTACCCATCTTCCCCGTCGTTTTCATCATGATCCTCGCACCTATCTACGACCATCTCATT 1189
Query 1290 ATCCCATTCGCTAGAAAAGCTACCAAGACCGAAACAGGAGTCACTCATCTACAAAGAATC 1349
|| |||||||||||||| || ||||| || ||||| ||||| |||||| |||||||||||
Sbjct 1190 ATTCCATTCGCTAGAAAGGCAACCAAAACAGAAACGGGAGTAACTCATTTACAAAGAATC 1249
Query 1350 GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTAGTTGAGATTAAA 1409
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 1250 GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA 1309
Query 1410 CGAAAGGGAGTGGCTAAAGACTCCGGCTTGCTTGACTCGAAAGAAACCTTACCCGTGACT 1469
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1310 CGGAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTCGAAAGAAACCTTACCCGTCACT 1369
Query 1470 TTCCTATGGATCGCACTTCAGTATCTTTTCCTAGGGTCAGCCGATCTATTCACACTAGCT 1529
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1370 TTCCTATGGATCGCGCTTCAATATCTTTTCCTAGGATCAGCTGATCTATTCACACTAGCT 1429
Query 1530 GGACTACTAGAGTATTTCTTCACGGAAGCACCTTCCTCAATGAGATCTCTCGCAACATCG 1589
|||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 1430 GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATCTCTAGCGACATCG 1489
Query 1590 CTCTCGTGGGCTTCTTTGGCTATGGGGTATTACCTAAGCTCAGTGATCGTGTCCATAGTA 1649
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1490 CTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCCATAGTA 1549
Query 1650 AACAGCATCACAGGAAGCTCAGGGAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGT 1709
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1550 AACAGCATCACAGGAAGCTCAGGCAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGC 1609
Query 1710 TACAAACTAGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC 1769
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC 1669
Query 1770 TACCTCTTTTGGGCAATGCGTTACAAGTATAGATCAACTGGTTCAAGAAGCTAAAATTGG 1829
|| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1670 TATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTCGAGAAGCTAAAATTGG 1729
Query 1830 ATGGGCAACTTTTG 1843
||| |||||||||
Sbjct 1730 GTGGTCAACTTTTG 1743
> Ahg912320 jgi|Araly1|912320|Al_scaffold_0001_2574
Length=1737
Score = 499 bits (270), Expect = 3e-140
Identities = 627/795 (79%), Gaps = 41/795 (5%)
Strand=Plus/Plus
Query 69 gaagtggaagaagagGTCT-CAAGATGGGAAGGCTACGCCGATTGGAGAAACAGAGCAGC 127
|||||| ||| || |||| ||| ||||||||||||||| || ||||| |||||||| ||
Sbjct 10 GAAGTGCAAGGTGATGTCTCCAA-ATGGGAAGGCTACGCTGACTGGAGGAACAGAGCCGC 68
Query 128 CGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCGTCTTAGTGGTGGAGATATT 187
|||||||||||||||||| |||||||| |||||||| |||||||| | ||||||||||||
Sbjct 69 CGTGAAAGGCCGTCACGGCGGCATGCTTGCCGCCTCCTTCGTCTTGGCGGTGGAGATATT 128
Query 188 AGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTT-GTGCTATACCT-AAGAGAATAC 245
||||||||||||| ||| ||||| || || || ||| ||| | || || |||| | | |
Sbjct 129 GGAGAATCTAGCGTTTTTAGCGAACGCAAGCAA-CTTGGTGTTGTATCTGAAGA-ACTTC 186
Query 246 ATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATTTCATGGGCACAGCTTTT 305
||||||||||||| | | | |||| | | ||| || |||| |||||||| ||| || ||
Sbjct 187 ATGCACATGTCTCTAGCGAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACCGCCTTC 246
Query 306 CTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCTCCACTTTTC-AAATCTT 364
|| || |||||||||||||| |||||| ||||||| ||||||||||| ||| |||||
Sbjct 247 CTTCTCGCTCTCCTCGGTGGCTTCCTCGCCGACGCCTTCTTCTCCAC-ATTCGTCATCTT 305
Query 365 CCTCATCTCAGCTTCCATCGAGTTTTTGGGA-TTGATCATACTCACAATTCAAGCTCGGA 423
|||| |||| || ||||| |||||| ||||| || ||| | |||||||| ||||| | |
Sbjct 306 CCTCGTCTCCGCCTCCATTGAGTTTCTGGGACTT-ATCCTGCTCACAATCCAAGC-CCGT 363
Query 424 C-ACCATCCTTAATGCCTCCAT-CGTGCGATAG-TC--C--C---A-CATGTGAAGAAG- 471
| || || |||||||| || | | ||| | || || | | | |||| || | |
Sbjct 364 CGTCCGTCTTTAATGCCGCC-TCCATGCAAGAGCTCTGCGGCGTTACCATGCGAGGTCGT 422
Query 472 TGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAG-CTTTGGGTGTG 530
|| ||||||| ||||| ||| | || |||||||| || || || || | || | || ||
Sbjct 423 TG-GTGGTTCAAAGGCGGCGTTTCTGTTCGTGGGATTATATCTAGT-GTCTCTAGGAGTC 480
Query 531 GGAGGGATCAAAGGTTCATTAG-CATCTCACGGAGCAGAACAGTTTGATGAGAGTACACC 589
|||||||| ||||| ||||| | | || ||||||||||| || || || ||||| || ||
Sbjct 481 GGAGGGATAAAAGGGTCATT-GCCGTCACACGGAGCAGAGCAATTCGACGAGAGCACGCC 539
Query 590 TAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACT-TCGTGTTTTGTCT-TGCTTGT 647
||||||||| ||||| || || || ||||| ||||||| | ||||| ||||| | | |||
Sbjct 540 TAAAGGTCGAAAACAGAGATCCACCTTCTTCAACTACTAT-GTGTTCTGTCTCT-CATGT 597
Query 648 GGAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGG 707
|||||||| || || || ||||| || || ||| | || ||||||||||| ||||| |||
Sbjct 598 GGAGCACTTGTGGCCGTGACGTTCGTTGTCTGGCTCGAGGACAACAAAGGCTGGGAGTGG 657
Query 708 GGATTCGGTGTTTCTACCAT-TGC-TATCTTCGTCTCTATTCTCATCTTTCTCTCT-GGA 764
||||| || || || ||||| | | ||| ||| |||| ||| || ||||||||| | ||
Sbjct 658 GGATTTGGAGTCTCCACCATCTCCATAT-TTC-TCTCCATTATCGTCTTTCTCT-TAGGT 714
Query 765 TCAAGATTTTATAGGAACAAGATTCCAT-GTGGAAGTCCTCTCACCACAATCTTGAAGGT 823
|| || ||||||| ||| || | ||| | |||||||||||||||||||||||||||||||
Sbjct 715 TCGAGGTTTTATAAGAA-AAAAATCCCTCGTGGAAGTCCTCTCACCACAATCTTGAAGGT 773
Query 824 TCTTCTTGCGGCTTC 838
|||||| || |||||
Sbjct 774 TCTTCTCGCAGCTTC 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78694446170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5