BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69860.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333097 jgi|Araly1|333097|fgenesh1_pm.C_scaffold_22000009 2638 0.0
> Ahg333097 jgi|Araly1|333097|fgenesh1_pm.C_scaffold_22000009
Length=1671
Score = 2638 bits (1428), Expect = 0.0
Identities = 1590/1669 (95%), Gaps = 8/1669 (0%)
Strand=Plus/Plus
Query 1 ATGGACAATGAGAAAGGGACAAGTTCCTCGGATTTAACGACGAGACAAAGGAAGCCTCTT 60
||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAATGAGAAAGGGACAA-TT--TCGGATTTAACGACGAGACAAAGGAAGCCTCTT 57
Query 61 GGTTGGAAAGCGATGCCTTATATCATAGGGAATGAAACATTGGAGAGGCTTGCCACATTC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 58 GGTTGGAAAGCGATGCCTTATATCATAGGGAATGAGACATTGGAGAGGCTTGCGACATTC 117
Query 121 GGTTTGATGGCGAATTTCATGGTGTATATGGTAAGAGAGTATCATATGGACCAAGTTCAA 180
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGATTGATGGCCAATTTCATGGTGTATATGGTAAGAGAGTATCATATGGACCAAGTTCAA 177
Query 181 GCTGTCACTCTTATCAACACTTGGTCTGCTCTCACCAACTTTGCTCCTATCATCGGAGCT 240
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCTGCCACTCTAATCAACACTTGGTCTGCTCTCACCAACTTTGCTCCTATCATCGGAGCT 237
Query 241 TTCATCTCCGACTCCTACACCGGAAAATTTAATACCATTGTCTTCGGTTCCATCGCTGAG 300
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTCATCTCCGACTCATACGCCGGAAAATTTAATACCATTGTCTTCGGTTCCATCGCTGAG 297
Query 301 TTGTTGGGCATGTTGGTGTTGACTTTCACGTCTCTGGTCCCTAATCTACGACCACCACCT 360
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 298 TTGTTGGGCATGTTGATGTTGACTTTCACGTCTCTGATCCCTAATCTACGACCACCACCT 357
Query 361 TGCACTGCCGACCAAATCACTGGACAATGTATTCCCTATAGCTATTCGCAGTTATACGTT 420
||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 358 TGCACTGCCGATCAAATCACTGGAAAATGTATTCGCTATAGCAATTCGCAGTTATACGTT 417
Query 421 TTACTCTCAGGACTTTTCTTGTTATCAGTTGGAACAGGTGGAATCCGGTCATGCAGTGTT 480
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 418 TTACTCTCAGGACTTTTCTTGTTATCAGTTGGAACAGGAGGAATCCGCTCATGCAGTGTT 477
Query 481 CCTTTCAGTCTCGATCAGTTCGATGATTCGACTGAAGAAGGAAGAGAAGGAAGTAGAAGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCTTTCAGTCTCGATCAGTTCGATGATTCGACTGAAGAAGGAAGAGAAGGAAGTAGAAGC 537
Query 541 TTCTTTAGCTGGTACTATACCACTCATACAATCGTCCAGTTAGTTTCAATGACACTAGTG 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 TTCTTTAGCTGGTACTATACCACTCATACAATCGTGCAGTTAGTTTCAATGACACTAGTG 597
Query 601 TTGTACGTACAGAACAACATCAGTTGGGGCATTGGATTCGCAATCCCGACCGTTCTCAAt 660
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 598 TTGTACGTACAGAACAACATCAGTTGGGCCATTGGATTCGCTATCCCGACCGTTCTCAAT 657
Query 661 ttttttGCGCTTCTTCTGCTTTTTGTGGGTACTCGGTATTATGTCTTTGTCAAACCCGAA 720
|| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 658 TTGTTTGCGCTTCTTCTGCTTTTTGTGGGAACTCGGTTTTATGTCTTTGTCAAACCCGAA 717
Query 721 GGAAGTGTCTTCTCTGGAGTTTTCAAGGTTCTTGTGGCTGCTTATAAGAAACGCAAGGCA 780
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 718 GGAAGTGTGTTCTCTGGAATTTTCAAGGTTCTTGTGGCTGCTTATAAGAAACGCAATGTA 777
Query 781 CGGTTTACTTCTGGAATTGACTACCATCAACCCTTACTAGAGACAGATTTACAATCAAAT 840
|||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 778 CGGTTTCCTTCTGGGATTGACTATTATCGACCCTTACTAGAGACAGATTTACAATCAAAT 837
Query 841 AAACTCGTACTCACTGATCAATTCAGATTCTTGAACAAAGCTGTGATAGTGATGAACAAT 900
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 AAACTCGTACTCACTGATCAATTCAGATTTTTGAACAAAGCTGTGATAGTGATGAACAAC 897
Query 901 GATGAAGCTGGAAATGAGGAGTGGAGAACCTGCACAGTGAGACAGATAGAGGACATCAAG 960
|||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 898 GATGAAGCTGAAAACGAGGAATGGAGAATTTGCACAGTGAGACAGATAGAGGACATGAAG 957
Query 961 TCAATAATCAGTATTATTCCAATATTTGCTTCGAGCATTATTGGATTTTTGGCTATGAAC 1020
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 958 TCTATAATCAGCATTATTCCAATATTTGTTTCGAGCATTATTGGATTTTTGGCTATGAAC 1017
Query 1021 CAACAACAGACGTTTACAGTCTCACAAGCACTAAAAATGGACCTCCAATTTCCAGGCACT 1080
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAACAACAAACTTTTACAGTCTCACAAGCACTAAAAATGGACCTCCAATTTCCAGGCACT 1077
Query 1081 TCTTACCTAATCCCTCCTGCTTCTATAACCGTCATATCATTATTAAACATAGGTATATGG 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1078 TCTTACCTAATCCCTCCTGCTTCTATAACCGTCATATCATTATTAACCATAGGCATATGG 1137
Query 1141 CTTCCCTTCTATGAAACCGTTTTGGTCCGACACATCGAAAACATTACAAAACAA-AACGG 1199
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 1138 CTTCCCTTCTATGAAACCGTTTTGGTCCGACACATTGAAAACATTACAAAACAAGAA-GG 1196
Query 1200 AGGTATCTCGTTACTACAAAAAGTCGGCATTGGGAATATTTTCTCCATCTCGACGATGCT 1259
||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1197 AGGCATCTCGTTACTTCAAAAAGTCGGCATTGGGAATATTCTCTCCATCTCGACGATGTT 1256
Query 1260 CATATCCGGTATTGTGGAGCGAAAGAGAAGAGATTTATCGCTTAATGGAGTAAAAATGTC 1319
|||||| ||||| |||||||||||||||||||||||||| |||| ||| ||||| || ||
Sbjct 1257 CATATCGGGTATCGTGGAGCGAAAGAGAAGAGATTTATCTCTTACTGGGGTAAACATATC 1316
Query 1320 GGTTTTCTGGCTAACCCCGCAACAAGTACTAATGGGATTTTATCAAGTCTTCACGATTGT 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 GGTTTTCTGGCTAACCCCGCAACAAGTACTAATGGGATTTTATCAAGTCTTCACCATTGT 1376
Query 1380 TGGTCTCACCGAGTTCTTCAACAAACAAGTTCCAATCAACATGAGAAGCATTGGGAACTC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 TGGTCTCACCGAGTTCTTCAACAAACAAGTTCCAATCAACATGAGAAGCATAGGGAACTC 1436
Query 1440 GTTGCTTTACTTAGGTTTGTCTCTAGCCAGTTATCTAAGCAGTGCCATGGTGAGCATTGT 1499
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1437 GTTGCTTTACTTAGGTTTGTCTCTAGCCAGTTACCTAAGCAGTGCGATGGTAAGCATTGT 1496
Query 1500 TCATAGTGTGACTGCTCGTGGA-G--GACAGAGTTGGCTAACGGATGATATTGACAAAAG 1556
||||||| |||||||||| ||| | |||||||||||||||||||||||||||||| |||
Sbjct 1497 TCATAGTCTGACTGCTCGCGGAAGACGACAGAGTTGGCTAACGGATGATATTGACACAAG 1556
Query 1557 CAAGTTGGATTGTTTCTATTACTTTATTGCCGCTTTAAGCACTCTTAATTTCATCTTCTT 1616
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1557 CAAGTTGGATTATTTCTATTACTTTATTGCCGCTTTAAGCACTCTTAATCTCATCTTCTT 1616
Query 1617 CTTCTGGTGTGCTCGAAGGTATCGTTACAGAAACTATAGTAATGAACAA 1665
||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1617 CTTCTGGTGTGCTCGAAGGTATCGTTATAGAAACTATAGTGATGAACAA 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5