BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69870.1
Length=2167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497163 jgi|Araly1|497163|fgenesh2_kg.22__7__AT1G69870.1 3363 0.0
> Ahg497163 jgi|Araly1|497163|fgenesh2_kg.22__7__AT1G69870.1
Length=2161
Score = 3363 bits (1821), Expect = 0.0
Identities = 2057/2171 (95%), Gaps = 15/2171 (1%)
Strand=Plus/Plus
Query 1 ACTACACCCAAAAAAGCTTCTAACAAAGAGAAAGTGTCTGTATGTTGTGCCCACTCTCTA 60
||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
Sbjct 1 ACTACACCCAAAAAAGCTTCTAACAGAGAGAAAGTG--TGTATGTTGTGCCCACTC-C-G 56
Query 61 CATTTATCAATCACT-TCATGTGTGTTACCTTGATTGCAAAAAAGTGAGAATATATTCTC 119
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CATTTATCAATCA-TATCATGTGTGTTACCTTGATTGCAAAAAAGTGAGAATATATTCTC 115
Query 120 ACAACATTAAATCCACCCCGAAATCGAAGTGAGTATATCACGAGTGTAGTAATATCTTAG 179
||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||
Sbjct 116 ACAACATTAAATCCACCCCAAAATCGAAGTGAGTATATTACGAGTTTAGTAATATCTTAG 175
Query 180 AGATGGTTTTGGAGGATAGAAAGGACGGTTCTTCTTTGCCGGGA-CGATCCGGTAGTTTC 238
|||||||||||||||||||||||||||| ||||||||| || || ||||||||||||
Sbjct 176 AGATGGTTTTGGAGGATAGAAAGGACGG---TTCTTTGCCACGACCG-TCCGGTAGTTTC 231
Query 239 TCTAAATCGTCACCGTCGGAGTTGGATGTTGTTGATCCCTACAAGCGGATAAGTTCGCCG 298
|| |||||||||||||||||| ||||||||||||||| ||||| |||| ||||||||||
Sbjct 232 TCCAAATCGTCACCGTCGGAGATGGATGTTGTTGATCAGTACAATCGGAAAAGTTCGCCG 291
Query 299 GGATCTA-TATTGGATGCTGAGAAGGTAGAGAAAAAGCCTGGAGGATGGAGAGCCGTCTC 357
| ||| | | |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GAATCAAGT-TTGGGTGCCGAGAAGGTAGAGAAAAAGCCTGGAGGATGGAGAGCCGTCTC 350
Query 358 GTTCATTTTAGGAAATGAGACGCTGGAGAGACTGGGATCGATAGGATTGTTGGCAAACTT 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 351 GTTCATTTTAGGAAATGAGACGCTGGAGAGACTGGGATCGATAGGGTTGTTGGCAAACTT 410
Query 418 CATGGTTTATCTAACCAAAGTGTTTCACTTAGAACAAGTCGACGCTGCAAATGTCATCAA 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 411 CATGGTTTATCTAACCAAAGTGTTTCACTTAGAACAAGTCGACGCAGCAAATGTCATCAA 470
Query 478 CATTTGGTCAGGTTTCACCAATCTCACTCCTCTCGTCGGAGCGTATATCTCAGACACTTA 537
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CATCTGGTCTGGTTTCACCAATCTCACTCCTCTCGTCGGAGCGTATATCTCAGACACTTA 530
Query 538 TGTTGGCCGCTTCAAGACCATCGCTTTCGCCTCATTCGCCACTCTCCTCGGACTAATAAC 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CGTTGGCCGCTTCAAGACCATCGCTTTCGCCTCATTCGCCACTCTCCTCGGACTAATAAC 590
Query 598 AATTACACTCACAGCATCGTTTCCTCAACTCCACCCAGCATCATGCAACAGCCAGGACCC 657
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 591 AATTACACTCACAGCATCGCTTCCTCAACTCCACCCAGCATCATGCAACAGCCAGAACCC 650
Query 658 ACTCAGTTGCGGCGGTCCGAATAAGCTCCAGATCGGAGTTTTGCTATTGGGACTCTGTTT 717
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 651 ACTCAGTTGCGGCGGTCCGAATAAGCTCCAGTTCGGAGTTTTGCTATTGGGACTCTGTTT 710
Query 718 CCTCTCCGTAGGGAGTGGAGGAATACGACCTTGTAGCATCCCTTTTGGGGTTGATCAGTT 777
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 711 CCTCTCTGTAGGGAGTGGAGGAATACGACCATGTAGCATCCCTTTTGGGGTGGATCAGTT 770
Query 778 TGACCAACGAACTGAGGAAGGGGTTAAAGGAGTGGCCAGTTTCTTCAACTGGTATTACAT 837
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 771 TGACCAACGAACTGAGGAAGGGATTAAAGGAGTGGCCAGTTTCTTCAACTGGTATTACAT 830
Query 838 GACTTTCACTGTGGTTCTGATCATTACACAGACCGTAGTTGTGTATATCCAGGATCAAGT 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 831 GACTTTCACTGTGGTTCTGATCATTACACAGACCGTAGTTGTGTATATCCAGGACCAAGT 890
Query 898 CAGTTGGATTATCGGTTTTAGTATCCCTACCGGACTCATGGCTCTTGCGGTTGTTATGTT 957
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 891 CAGTTGGATCATCGGGTTTAGTATCCCTACCGGACTCATGGCTCTTGCGGTGGTTATGTT 950
Query 958 TTTTGCCGGAATGAAGCGTTATGTCTACGTTAAACCAGAAGGAAGTATATTCTCTGGGAT 1017
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 951 TTTTGCCGGAATGAAGCGTTATGTCTACGTTAAACCTGAAGGGAGTATATTCTCTGGGAT 1010
Query 1018 CGCTCAAGTTATCGTGGCAGCTCGTAAGAAGCGAAAGCTGAAACTTCCGGCGGAAGATGA 1077
|||||||||||| |||||||||||||||||||||||||||||| | || | ||||||||
Sbjct 1011 CGCTCAAGTTATTGTGGCAGCTCGTAAGAAGCGAAAGCTGAAAGTCCCTTCAGAAGATGA 1070
Query 1078 CGGCACTGTCACCTATTACGACCCAGCCATCAAGTCTAGCGTGTTATCCAAGTTACACCG 1137
||||||||| | |||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1071 CGGCACTGTGAACTATTACGACCCAGCCATAAAATCTAGCGTGTTGTCCAAGTTACACCG 1130
Query 1138 CAGTAACCAATTCAGGTGTCTTGACAAAGCCGCGGTGGTTATAGAAGGTGACCTAACACC 1197
||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1131 CAGTAACCAATTCAGGTTTCTTGACAAAGCCGCGGTGATTATAGAAGGTGATCTAACACC 1190
Query 1198 CGAGGGACCTCCCGCAGACAAGTGGCGGTTATGCAGCGTCCAAGAAGTGGAAGAAGTGAA 1257
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CGAGGGAGCTCCCGCGGACAAGTGGCGGTTATGCAGCGTCCAAGAAGTGGAAGAAGTGAA 1250
Query 1258 GTGTTTGATCCGAATTGTTCCTATCTGGTCGGCCGGAATAATCTCACTCGCGGCCATGAC 1317
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 1251 GTGTTTGATCCGAATTGTTCCTGTTTGGTCGGCAGGAATAATCTCACTCGCGGCCATGAC 1310
Query 1318 AACACAAGGCACTTTCACGGTCTCTCAAGCTTTGAAAATGGATCGAAACTTAGGTCCTAA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1311 AACACAAGGCACTTTCACGGTCTCTCAAGCTTTGAAAATGGATCGAAACTTGGGTCCTAA 1370
Query 1378 ATTCGAGATTCCGGCTGGTTCACTCTCCGTCATCTCTCTCCTCACAATCGGCATCTTTCT 1437
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1371 GTTCGAGATTCCAGCTGGTTCACTCTCCGTTATCTCTCTCCTCACAATCGGCATCTTTCT 1430
Query 1438 TCCCTTCTACGACCGCGTTTTTGTACCATTCATGCGGCGAATCACCGGCCATAAATCCGG 1497
||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1431 ACCCTTTTACGACCGCGTTTTTGTCCCATTCATGCGGCGAATCACTGGCCATAAATCCGG 1490
Query 1498 AATCACACTCCTCCAAAGGATAGGAACAGGGATCGTTTTCGCGATCTTTTCTATGATCGT 1557
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AATCACACTCCTCCAACGGATAGGAACAGGGATCGTTTTCGCGATCTTTTCTATGATCGT 1550
Query 1558 TGCGGGCATTGTGGAGCGTATGAGACGCATACGCTCCATCAATGCCGGAGATCCAACGGG 1617
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1551 TGCGGGCATTGTGGAGCGCATGAGGCGCATACGCGCCATCAATGCCGGAGATCCAACCGG 1610
Query 1618 AATGACTCCAATGTCGGTGTTTTGGCTTTCGCCGCAGCTAATTCTCATGGGACTATGTGA 1677
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1611 AATGACTCCAATGTCAGTGTTTTGGCTTTCACCGCAGCTAATTCTGATGGGACTATGTGA 1670
Query 1678 AGCATTCAATATCATCGGACAAATTGAGTTCTTCAACAGTCAGTTTCCAGAGCACATGAG 1737
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1671 AGCATTCAATATTATCGGACAAATAGAGTTCTTCAACAGTCAGTTTCCGGAGCACATGAG 1730
Query 1738 AAGTATCGCTAACTCTCTCTTCTCTTTATCGTTCGCCGGTTCGAGCTACCTTAGTAGTTT 1797
||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1731 AAGCATTGCTAATTCTCTCTTCTCTTTATCCTTCGCCGGTTCAAGCTACCTTAGTAGTTT 1790
Query 1798 CCTTGTGACTGTCGTTCATAAATTCTCCGGTGGGCATGATCGTCCGGATTGGCTAAACAA 1857
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCTCGTGACTGTCGTTCATAAATTCTCCGGTGGGCATGATCGTCCGGATTGGCTAAACAA 1850
Query 1858 GAATCTCAACGCGGGAAAATTGGATTACTTCTATTATCTGATTGCGGTTTTGGGTGTGGT 1917
||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||
Sbjct 1851 GAATCTCAACGCGGGAAAATTAGATTACTTCTATTATCTGATTGCGATTATGGGTGTGGT 1910
Query 1918 TAATCTGGTTTACTTTTGGTATTGTGCTCGGGGATACCGGTACAAGGTCGGTTTACCGAT 1977
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1911 TAATCTGGTTTACTTTTGGTATTGTGCTCGGGGGTACCGGTACAAGGTCGGTTTACAGAT 1970
Query 1978 TGAAGACTTTGAGGAGGACAAGTCCTCCGATGATGTTGAGATGACTTCGAAGAAATCGAT 2037
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1971 TGAAGACTTTGAGGAGGACAAGTCCTCCGATGATGTTGAGATGACTTCAAAGAAATCGAT 2030
Query 2038 GAAATGATTTAATAGACTATCCTTAGGGACAACAAGAAGATTGTCGATGTTGTTTGAATA 2097
|||||||||||||||||| ||||||| |||||||||| ||| |||| |||||||||||
Sbjct 2031 GAAATGATTTAATAGACTGGCCTTAGGAACAACAAGAAAATTATCGAGGTTGTTTGAATG 2090
Query 2098 ATTACTATGACAATGTATGT--ATCATAATATGTAAGAACTAGAATATTTAATAAAATTT 2155
||||| |||||||||||| | |||||||||| ||||||||||||||| |||||||| ||
Sbjct 2091 ATTACGATGACAATGTATATCTATCATAATATATAAGAACTAGAATATATAATAAAACTT 2150
Query 2156 TACCTTTCATT 2166
||| |||||||
Sbjct 2151 TACTTTTCATT 2161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81551214545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5