BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69880.1
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497162 jgi|Araly1|497162|fgenesh2_kg.22__6__AT1G69880.1 815 0.0
> Ahg497162 jgi|Araly1|497162|fgenesh2_kg.22__6__AT1G69880.1
Length=618
Score = 815 bits (441), Expect = 0.0
Identities = 566/624 (91%), Gaps = 17/624 (3%)
Strand=Plus/Plus
Query 1 AAGAGCTTCTACTCAAAACCATTTGCTTCTTTCTGCTTagagagagagagagaCACACTC 60
||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1 AAGAGCTTCTACTCAAAACCATTTGCTTCTTTCTGATT----AGAGAGAGAGACACACAC 56
Query 61 AATGGGTGCTAACGTTTCTACTCCAGACCAGAGATTTCAGGTAACCCACTTCCGTTCAAC 120
||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||
Sbjct 57 AATGGGTGCTAACGTTTCTTCTCCAGAGCAGAGATTTCAGGTGACCAACTTCCGTTCAAG 116
Query 121 GAAGCCATGGACACCTCGACCTGAGATTTATCCTTTCAAAGTCAACAGTCCTTGTATTGT 180
||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 117 GAAGCCATGGACACCTCAACCTGAGATTTATCCTTTCAATGTCAACAGTCCTCGTATTGT 176
Query 181 GGAGATCAAGAACATGAATCAGTGGAAATCTAGGCTCAACGCTCTTAAAGACACCAACAA 240
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 177 GGAGATCAAGAACATGAATCAGTGGAAATCTCGGCTCAACGCTCTTAATGACACCAACAG 236
Query 241 GCTGCTGGTGATCGAGTTCACAGCTAAATGGTGTGGACCATGTAAAACCCTTGAACCAAA 300
|||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 237 GCTGCTGGTGATTGAGTTTACAGCCAAATGGTGTGGACCATGTAAATCCCTTGAACCAGA 296
Query 301 GCTCGAAGAGTTGGCTGCTAAATACACCGATGTTGAGTTCGTGAAGATTGATGTCGATGT 360
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCTTGAAGAGTTGGCAGCTAAGTACACCGATGTTGAGTTCGTGAAGATTGATGTCGATGT 356
Query 361 CTTAATGAGCGTGTGGATGGAGTTCAACCTTAGCACTTTACCTGCGATTGTATTCATGAA 420
||||||||||| |||||||| | |||||||| |||||| ||||||||||||||||||||
Sbjct 357 ATTAATGAGCGTATGGATGGAATACAACCTTAACACTTTGCCTGCGATTGTATTCATGAA 416
Query 421 AAGAGGCCGAGAAGTAGACATGGTTGTGGGTGTGAAGGTTGATGAGTTAGAGAGGAAACT 480
|||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 417 AAGAGGAAGAGAAGTAGACAGGGTTGTGGGTGTGAAGGTTGATGAGGTAGAGAGGAAACT 476
Query 481 CAATAAATACACACAATCCTTCTTCT-----GA-ACG-TTG-AATTCCT-AACACGCCAA 531
| | ||||| |||||||||||||||| || | | || |||| || |||| |||||
Sbjct 477 CCACAAATATACACAATCCTTCTTCTAAAAAGAGAAGCTTTCAATTACTTAACATGCCAA 536
Query 532 ACAAAACTCCTCATCACCTTACGCCAAGAATATATA--GTTTACTACTATGTATAGATAA 589
||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||
Sbjct 537 ACAAAACTCCTCATCACCTTATGCCAAGAATATATATAGTTG-CTACTATGTATAAATAA 595
Query 590 AATGTTTGAACGACGATTCAACAA 613
| ||||||||||||||||||||||
Sbjct 596 A-TGTTTGAACGACGATTCAACAA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25999829394
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5