BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69900.1
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497161 jgi|Araly1|497161|fgenesh2_kg.22__5__AT1G69900.1 1729 0.0
> Ahg497161 jgi|Araly1|497161|fgenesh2_kg.22__5__AT1G69900.1
Length=1191
Score = 1729 bits (936), Expect = 0.0
Identities = 1122/1210 (93%), Gaps = 20/1210 (2%)
Strand=Plus/Plus
Query 15 AATGGAGTTATTCAATAATGGAACGGCCGTTAGATTACGGAGCTGTCACGATACATACAT 74
|||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||
Sbjct 1 AATGGAGTTATTCACCAAAGGAACGGCCGTTAGATTACGGAGCTGTCACGAAAAATACAT 60
Query 75 CTACGCCGTCGAGGATGAAAAAACCGTCCGTCAAAGCTCTGACGGAACCTCACGGCAATC 134
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CTACGCCGTCGACGATGAAAAAACCGTCCGTCAAAGCTCTGACGGAACGTCACGGCAATC 120
Query 135 GCTATGGACGGTGGAGATGGTTCCACGTAAACCAAAATTCATACGTCTCAAGAGCTGCTA 194
| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||
Sbjct 121 GTTATGGACGGTGGAGATGGTGCCACGTAAACCCAAATTCATCCGTCTCAAGAGCTGTTA 180
Query 195 CGGCAAGTATTTAACGGCGAGCGAGTCGTCGTTTCTTCTGGGAATGACCGGCGCGAAAGT 254
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 181 CGGCAAGTATTTAACGGCGAGCGAGTCGTCATTTCTTCTGGGAATGACCGGAGCGAAAGT 240
Query 255 CATCCAAACGCCGCCGTTTCGTCAAGCGGAGCATGAAAGCGACTGGGAACCAATCAAAGA 314
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 241 CATCCAAACGCCGCCGTATCGTCAAGCGGAGCATGAAAGCGACTGGGAGCCAATCAGAGA 300
Query 315 AGAGTCAACGGTTAAACTCATGTCGTGGAACGAGAAATATTTACGTGGGAACGGAGGAGC 374
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 AGAGTCAACGGTCAAACTCATGTCGTGGAACGAGAAATATTTACGTGGAAACGGAGGAGC 360
Query 375 TCCGCCGTGGAGGAACTCTGTGACGTGTGATCGTGAGCCGCACATCTCAGCGACGAAGAA 434
||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 361 TCCGCCGTGGAAGAACTCTGTGACGTGTGATCGTGAGCCACATATTTCAGCGACGAAGAA 420
Query 435 ATGGATCTTGTGGTCTGTGGAGGTTGTTGAGAATCCTGATAAGGTTTTGTTTGCTGATCG 494
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 421 ATGGATCTTGTGGTCTGTGGAGCTCGTTGAGAATCCTGATAAGGTTTTGTTTGCTGATCG 480
Query 495 GTTTTCATCACCGGCTTCTAGTTTTAACTCGTCGGTCTCCTCCGACGGGTCAAATCTCGG 554
||||||||||||||||| |||||||||||||||| | |||||| |||||||||| |||
Sbjct 481 TTTTTCATCACCGGCTTCGAGTTTTAACTCGTCGG--T-CTCCGATGGGTCAAATCACGG 537
Query 555 GTCACCGGGTCAGAAATT-GCTGACTTTTGGATCTTCTGAATCTATCGGGTCGGATCCTG 613
|||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 538 GTCACCGGTTCAGAAATTACCT-ACTTTTGGATCTTCTGAATCTATCGGGTCGGATCCTG 596
Query 614 GGTCACTTGTATCAGTTTCTTCTTCGAAACTTATGTTTACTCCGTCAAGGTCGGGTACAT 673
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GGTCACTTGCATCGGTTTCTTCTTCGAAACTTATGTTTACTCCGTCAAGGTCGGGTACAT 656
Query 674 TGTCCCCAAAACCAACAGAGAGGAAATGTTCGAAGAAGATAATAGTAGAAAATGTATCGG 733
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 657 TGTCCCCAAAACCAACAGAGAGGAAAAGTTCGAAGAAGATAATTGTAGAAAATGTATCAG 716
Query 734 CGATGGAAATATTCCGGGATGCGAAATCGGTGCGTTTACGAAGCTATGCACATCATGGGA 793
|||||||||||||||||||||||||||||||||||||||||||| | | || || |
Sbjct 717 CGATGGAAATATTCCGGGATGCGAAATCGGTGCGTTTACGAAGC-A---A-AT-AT---A 767
Query 794 AATATTTGATTGCTGATGACGATGAAGAGGGTGTGATAATGGGCAAAAACGGGTCATCTA 853
| || |||||||||||| |||||| ||||| | |||||| || |||||||||||
Sbjct 768 --T----GACTGCTGATGACGACGAAGAGAGTGTGGTGATGGGCCGAACCGGGTCATCTA 821
Query 854 AAGAGGCTCGATGGAGAGTTGAAATGGTACCAGGATCCGAAAAGGCGATCCGGTTAAAGA 913
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 822 AAGAAGCTCGATGGAGAGTTGAAATGGTACCCGGATCCGAAAAGGCGATCCGGTTAAAGA 881
Query 914 GCTGCCATGGTGGATACTTGACGGCGTCCAATGAGCGGTTTTTGTTGGGAGCGACCGGGC 973
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 882 GCTGCCACGGTGGATACTTGACGGCGTCGAATGAGCGGTTTTTGTTGGGAGCGACGGGGC 941
Query 974 ATAAGGTGGTGCAGTCTAGGAAGATTCGTGCCGATGAGCCGGCGGGAGAGTGGGAGCCGG 1033
||||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||
Sbjct 942 ATAAGGTGGTGCAGTCTAGGAGGATCCGGGCCGGTGAGCCGGCGGGAGAGTGGGAGCCGG 1001
Query 1034 TGAAAGAAGGTTCAAGGGTGAAGTTAAGGAGCAGAAACGGCGGGAATTATTTAAGAGCCA 1093
||||||||||||||| || ||| | ||||| |||||||||||||||||||| |||||||
Sbjct 1002 TGAAAGAAGGTTCAAATGTTAAGCTGAGGAGTAGAAACGGCGGGAATTATTTGAGAGCCA 1061
Query 1094 ATGGGGGAGTGCCACCTTGGAGGAATTCGGTTACGCATGATTTACCAAACCGGAGTGCTA 1153
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||
Sbjct 1062 ATGGGGGAGTGCCACCTTGGAGGAATACGGTTACACATGATTCACCAAACCGGAGTGTTA 1121
Query 1154 CGCAGAGTTCGGTGGTTTGGGACGTTGATGTGGTCGATATTCATGGGACCGGTTGATTCA 1213
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1122 CGCAGAATTGGGTGGTTTGGGACGTTGATGTGGTCGATATTCATGGGACAGGTTGATTCA 1181
Query 1214 TTACTTTAAA 1223
| ||||||||
Sbjct 1182 TGACTTTAAA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5