BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69910.1
Length=2153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497160 jgi|Araly1|497160|fgenesh2_kg.22__4__AT1G69910.1 3330 0.0
> Ahg497160 jgi|Araly1|497160|fgenesh2_kg.22__4__AT1G69910.1
Length=2142
Score = 3330 bits (1803), Expect = 0.0
Identities = 2045/2159 (95%), Gaps = 28/2159 (1%)
Strand=Plus/Plus
Query 3 AAAAGTTCAGTCAACAGATTTAGAATCAGATCTCTTCCTTTCTCTTTTACATGTCTCAAC 62
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 AAAA-TTCAGTCAACAGATTTAGAATCAGATCTCTTCCTTTCTCCTTTACATGTCTCAAC 59
Query 63 CACCGTGGAGATGTTTCTCTCTACTCATCTTTGTTCTCACCATTTTTAGTACTAAACCTT 122
||||||||||||| |||||||||||| ||||||||||||||| || || ||||||||
Sbjct 60 CACCGTGGAGATGCTTCTCTCTACTCTTCTTTGTTCTCACCA---TT-GT--TAAACCTT 113
Query 123 CCTCTGCATCTACTTCATGTTCTTCTTCATTTCATTGCCCACCGTTCAACTCCTCACCAC 182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 114 CCTCTGCATCTACTTCATGTTCTTCTTCATTTCATTGCCCACCGTTTAACTCCTCACCAC 173
Query 183 CGTACCCTTTCTCAGCTTCTCCGGGATGTGGCCACCCAAACTTCCAGATCCAATGCTCAT 242
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CGTACCCATTCTCATCTTCTCCGGGATGTGGCCACCCAAACTTCCAGATCCAATGCTCAT 233
Query 243 CTTCACGCGCCACCATCACAATCAAAAACCTCACTTTCTCTATCCTCCATTACTCATCAA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CTTCACGCGCCACCATCACAATCAAAAACCTCACTTTCTCTATCCTCCATTACTCATCTC 293
Query 303 TCTCCTCTTCTCTAACCCTCTCTCCCATTACAAACACTAACCGGAAC-ACAAACAACTGT 361
||||||||||||||||||||||||||||||||||| ||| ||||| | || |||||||||
Sbjct 294 TCTCCTCTTCTCTAACCCTCTCTCCCATTACAAACTCTACCCGGACCAAC-AACAACTGT 352
Query 362 TCTTCT-CTCCGGTTCTCCTCCTCACCAAACCGGTTCATCGACTTAACCGGTTCACCTTT 420
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 353 TCTTCTGC-CCGGTTCTCCTCCTCACCAAACCGGTTCATCGACTTAACCGGTTCATCTTT 411
Query 421 CAGAGtctctgactcttcttgctctcgtctctctcttctccgtccttgctctccttttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 412 CAGAGTCTCTGACTCTTCTTGCTCTCGTCTCTCTCTTCTCCGTCCTTGCTCTCCTTTAAC 471
Query 481 tctccCCAACTGTTCTCGTTGTCCTTGGGACTGTAAACTCCTAAAGAATCCGGGTCGGAT 540
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 472 TCTCCCTAACTGTTCTCGTTGTCCTTGGGACTGTAAACTTCTAAAGAACCCGGGTCGGAT 531
Query 541 CCTCCACGGTTGTGAATCAACCCACGGGTCGTTATCTGAACAAGGCTGTCAAGGAGATCT 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CCTCCACGGTTGCGAATCAACCCACGGGTCGTTATCTGAACAAGGCTGTCAAGGAGATCT 591
Query 601 TCTTGGTTTTCTTCAAGATTTCTTCACTAGATTTGGATTTGAAGTTGAATGGGACGAATC 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TCTTGGGTTTCTTCAAGATTTCTTCACTAGATTTGGATTTGAAGTTGAATGGGACGAATC 651
Query 661 TCAAGATCCATACTTCATTAAATGCAGAGATTGTCAAATCAAGAATGGTGTTTGCGGGTT 720
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TCAAGATCCTTACTTTGCTAAATGCAGAGATTGTCAAATCAAGAATGGTGTTTGCGGGTT 711
Query 721 TAATTCGACCCACCCGAATCAAGATTTCATCTGTTTCCACAAATCAAGATCCGAATTAGT 780
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 712 TAATTCGACCCACCCGAATCAAGATTTCCTCTGTTTCCACAAATCAAGATCCGAATTAGT 771
Query 781 AACTCAAAGAGATAACAACAAAAGAGTCAATCATATTGCTGTGTTGTCTCTTATCTTCGC 840
||| || |||||| | |||||||||||||| || |||||||||||||||||||||||
Sbjct 772 AACACACAGAGAT-TC--TAAAAGAGTCAATCACATCGCTGTGTTGTCTCTTATCTTCGC 828
Query 841 TTTGACTTGTCTCTTACTTGTTTTCTCCGTCGCCGTAGCGATTTTCCGATCACGAAGAGC 900
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 829 TTTGACATGTCTCTTACTTGCTTTCTCCGTCGCCGTAGCGATTTTCCGATCACGGAGAGC 888
Query 901 TAGCTTT-TTATCCTCAATCAATGAAGAAGACCCGGCTGCTCTGTTCCTCCGTCACCACC 959
|| ||| || || ||| |||| |||||||||||||||||||| |||||||| | ||||
Sbjct 889 GAG-TTTCTTGTCTTCAGTCAACGAAGAAGACCCGGCTGCTCTCTTCCTCCGCCGTCACC 947
Query 960 GCTCCGCCGCTCTTCTCCCACCAGTCTTCACCTTCGAAGAACTCGAATCCGCCACAAACA 1019
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 948 GCTCCGCCGCTCTTCTCCCACCAGTCTTCACCTTCGAAGAGCTCGAATCCGCCACAAACA 1007
Query 1020 AATTCGACCCCAAGCGAAAAATCGGAGACGGTGGTTTCGGTTCTGTTTACTTAGGCCAAC 1079
|||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||
Sbjct 1008 AATTCGACCCCAAGCGCAAAATTGGGGACGGTGGCTTCGGTTCTGTTTACTTAGGCCAAC 1067
Query 1080 TCAGCGACGGACAACTCCTCGCCGTTAAATTCCTCCACCATCACCACGGCGCAACCGCCG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TCAGCGACGGACAACTCCTCGCCGTTAAATTCCTCCACCATCACCACGGCGCAACCGCCG 1127
Query 1140 CAGCCACCGAGCATTGCAAAGCTTTCTCAATGAAGTCTTTTTGCAATGAGATTTTGATCC 1199
| |||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct 1128 CCGCCACCGAGCATTGCAAAGCATTCTCAATGAAATCATTCTGCAATGAGATCTTGATCC 1187
Query 1200 TTTCTTCAATCAACCATCCTAACCTCGTCAAGCTCCATGGCTATTGCTCTGACCCGAGAG 1259
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1188 TCTCTTCAATCAACCATCCTAACCTCGTCAAGCTCCATGGCTATTGCTCTGATCCTAGAG 1247
Query 1260 GACTTCTTCTTGTTCACGATTACGTCACTAACGGTACTCTCGCTGATCATCTTCACGGCA 1319
| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1248 GGCTTCTTCTTGTCCATGATTACGTCACTAACGGTACTCTCGCCGATCATCTTCACGGCC 1307
Query 1320 GGGGACCGAAGATGACGTGGCGTGTAAGGTTAGATATTGCGT-TGCAAACGGCTTTAGCT 1378
|| ||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||
Sbjct 1308 GGAGACCGAAGATGACGTGGCGTGTAAGGTTAGATATTGC-TGTACAAACAGCTTTAGCT 1366
Query 1379 ATGGAGTATCTTCACTTCGATATTGTTCCTCCGGTTGTTCATAGAGATATAACTTCGTCG 1438
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1367 ATGGAGTATCTTCACTTCGATATTGTTCCACCGGTTGTTCATAGAGACATAACTTCGTCG 1426
Query 1439 AATATCTTTGTGGAGAAGGATATGAAAATCAAAGTCGGAGACTTTGGTCTCTCTAGGCTC 1498
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1427 AATATCTTTGTGGAGAAGGATATGACAATCAAAGTCGGAGACTTTGGTCTCTCTAGGCTC 1486
Query 1499 TTGGTGTTTTCAGAGACGACTGTGAATTCAGCTACTTCGTCTGATTACGTTTGTACCGGA 1558
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1487 TTGGTGTTGTCAGAGACGACGGTGAATTCAGCTACTTCGTCTGATTATGTTTGTACCGGA 1546
Query 1559 CCACAAGGTACGCCCGGTTATTTAGACCCGGATTATCACCGGTCTTTTCGGTTAACGGAG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CCACAAGGTACGCCCGGTTATTTAGACCCGGATTATCACCGGTCTTTTCGGTTAACGGAG 1606
Query 1619 AAAAGTGACGTGTATAGCTACGGTGTCGTTTTGATGGAGTTGATTACGGGTATGAAAGCG 1678
|| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1607 AAGAGTGACGTGTATAGTTACGGCGTCGTTTTGATGGAGTTGATTACGGGGATGAAAGCT 1666
Query 1679 GTTGATCAACGACGTGAGAAGAGGGACATGGCTTTAGCGGATCTTGTTGTATCCAAGATT 1738
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1667 GTTGATCAACGACGTGAGAAGAGGGATATGGCTTTAGCGGATCTTGTTGTATCCAAGATC 1726
Query 1739 CAAATGGGTCTTTTGGATCAGGTGATTGACCCCTTGCTTGCGTTAGACGGCGATGATGTG 1798
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1727 CAAATGGGTCTTTTGGATCAAGTGATTGACCCGTTGCTTGCGTTAGACGGCGATGATGTG 1786
Query 1799 GCTGCGGTGAGTGACGGATTCGGTGTTGCGGCGGTTGCTGAGCTGGCGTTCCGGTGTGTT 1858
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 GCGGCGGTGACTGACGGATTCGGTGTTGCGGCGGTTGCTGAGCTGGCGTTCCGGTGTGTT 1846
Query 1859 GCGACGGATAAGGATGATCGTCCGGATGCTAAAGAGATTGTTCAGGAGTTGAGGAGGATT 1918
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1847 GCGACGGATAAGGATGATCGTCCGGACGCTAAAGAGATTGTTCAGGAGTTGAGGAGGATT 1906
Query 1919 AGGAGCCATACACGTGT-AGCGGATGATGACGTGGCGAAAAATTGACTGTTGGATTAGAT 1977
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 1907 AGGAGCCATACACGTGTGAG-GGATGATGACGTGGCGAAAGATTGACTGTTGGATTAGAT 1965
Query 1978 TACGGATGACGTAATGTGAATGTGATGTAAGTAAAGTGTTGTTGACTGGTCTCATTGTGT 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 TACGGATGACGTAATGTGAATGTGATGTAAGTAAAGTGTTGTTGACTGGTCTCATTGTGT 2025
Query 2038 ACGTGTTGAATTTTGTCGGGAATTGCAAACCTTCTACCCCAACTAGAAGGAGCTTCACAt 2097
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2026 ACGTGTTGAATTTTGTCGGGAATTGCAAACCTTCTAACCCAACTAGAAGGAGCCTCACAT 2085
Query 2098 gtgtgtgtgtgACGTAATCCTAGTACAC-A---CACA--TAACTCGAAGTTTGTATTTT 2150
||||||||| | |||||||||||||| | |||| ||||||||||||||||||||
Sbjct 2086 GTGTGTGTG--ATGTAATCCTAGTACAGTAGTACACACGTAACTCGAAGTTTGTATTTT 2142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81017951115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5