BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69920.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951872 jgi|Araly1|951872|scaffold_2200004.1 1140 0.0
> Ahg951872 jgi|Araly1|951872|scaffold_2200004.1
Length=806
Score = 1140 bits (617), Expect = 0.0
Identities = 746/809 (92%), Gaps = 5/809 (1%)
Strand=Plus/Plus
Query 2 ACACAAACTC-TTCAGTCCAGATGTTAAAAAACAAGAAATCAGACAACTCCTTGTCTCGA 60
|||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ACACAAACTCTTTAAG-CCAGATGTTAAAAAACAAGAAATCAGACAACTCATTGTCTCGA 59
Query 61 GACACATTACAAATCaaaaaaagaaaaaaaaCCACGATGGCTCAAAATGGTTCGAATACT 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 GAAACATTACAAATCAAAAAAAGAAAAAAAACCACGATGGCTCAAAATGGTTCGAACACA 119
Query 121 ACTGTGAAGCTGATAGGGACATGGGCAAGCCCATTCGCTATAAGGGCTCAAGTGGCTCTA 180
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 120 ACTGTGAAGCTGATAGGGACATGGGCAAGCCCATTCGCTTTGAGGGCTCAAGTGGCTCTA 179
Query 181 CACCTCAAGTCAGTAGAGCACGAGTATGTCGAAGAAACCGATGTTCTGAAAGGAAAGAGC 240
||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 180 CACCTTAAGTCCGTAGAGCACGAGTATATCGAAGAAACCGATGTTCTGAAAGCAAAGAGC 239
Query 241 GATCTTCTTATTAAATCCAACCCTATACACAAGAAAGTCCCTGTCCTCATCCATGGTGAT 300
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GATCTCCTTATTAAATCTAACCCTATACATAAGAAAGTCCCTGTCCTCATCCATGGTGAT 299
Query 301 GTATCAATCTGTGAATCTCTCAACATCGTCCAATACGTCGATGAATCTTGGCCGTCTGAT 360
| |||||||| || |||||||||||||| || ||||| |||||||| |||||||| |||
Sbjct 300 ATCTCAATCTGCGAGTCTCTCAACATCGTTCAGTACGTGGATGAATCGTGGCCGTCCGAT 359
Query 361 CTTTCCATCCTCCCAACACTTCCCTCGGAACGTGCCTTTGCCCGTTTTTGGGCTCACTTC 420
||||| |||||||| | || ||||| || ||||||||||| ||||||||||||||||||
Sbjct 360 CTTTCTATCCTCCCTTCCCTACCCTCCGATCGTGCCTTTGCTCGTTTTTGGGCTCACTTC 419
Query 421 GTTGACGGAAAGTTGTTTGAATCGATCGATGCGGTGGCGGGAGCAAAAGACGACGCCGCC 480
||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 420 GTTGACGGAAAGTTGTTTGAATCGATCGATGCGGTAGCGGGAGCGAAAGATGATGCCGCG 479
Query 481 AGGATGACATTGGCGGGGAATCTGATGGAGAATCTAGCGGCACTTGAAGAGGCGTTTCAA 540
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 AGGATGGCGTTGGCGGGGAATCTGATGGAGAATCTGGCGGCACTTGAAGAGGCGTTTCAA 539
Query 541 AAGAGTAGCAAAGGCGGGGACTTTTTTGGAGGGGGGAACATTGGGTTTGTCGATATAACT 600
||||||||||||||||| ||||| || ||||||| |||||||||||||| |||||| ||
Sbjct 540 AAGAGTAGCAAAGGCGGAGACTTCTTCGGAGGGGAAAACATTGGGTTTGTTGATATAGCT 599
Query 601 GTTGGGGCCATAGTAGGTCCAATCTCTGTCATTGAAGCTTTTTCAGGTGTTAAGTTTTTG 660
||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 600 GTTGGGGCCATAGCAGGCCCAATCTCTGTCATCGAAGCGTTTTCAGGTGTTAAGTTTTTG 659
Query 661 CGTCCAGACACAACACCGGGCCTGATTCAGTGGGCTGAGAAATTTAGGGCCCATGAAGCT 720
|||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 660 CGTCCAGACACAACACCGGGCCTGCTTCATTGGGCTGAGAAATTCAGGGCCCATGAAGCT 719
Query 721 GTAAAACCTTACATGCCTACCGTTGCCGAGTTCATCGAGTTTGCCAAAAAGAAATTCAGT 780
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 720 GTGAAACCTTACATGCCTACCGTTGCCGAGTTTATCGAGTTTGCCAAAAAGAAATTCAAT 779
Query 781 GTTTAGTGACTACATCTCTTATGATTTTC 809
||||||||| | ||| | | |||||||||
Sbjct 780 GTTTAGTGATTGCAT-T-T-ATGATTTTC 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5