BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69930.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497157 jgi|Araly1|497157|fgenesh2_kg.22__1__AT1G69930.1 1295 0.0
> Ahg497157 jgi|Araly1|497157|fgenesh2_kg.22__1__AT1G69930.1
Length=880
Score = 1295 bits (701), Expect = 0.0
Identities = 811/864 (94%), Gaps = 8/864 (1%)
Strand=Plus/Plus
Query 1 ATCAAACCACAGCTGTTCAATTCCTATCCCACACaaaaaaaaaaaaaaCACGCACACAAA 60
||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| |
Sbjct 1 ATCAAACCACAGCTGTTCAATTCCTATCCCACA-AAAAAAAAAACACACACGCACACACA 59
Query 61 AACAAGAGCTGTGAGTTTGATCAATCTCTTCAAAAAGTGTAACACATGGGTCTAATGAAT 120
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 60 AACAAGAGCTGTGAGTTTGATCAATCTCGTCAAAAGGTGTAACACATGGGTCTAATGAAT 119
Query 121 CGG-TCAAAGAATGATGAGTACGTAAAGCTACTAGGAGCATGGCCTAGCCCTTTTGTGCT 179
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 -GGTTCAAAGAATGATGAGTACGTAAAGCTGTTAGGAGCATGGCCTAGCCCTTTTGTGCT 178
Query 180 GAGAACTCGGATCGCACTTAACCTAAAGAACGTAGCATACGAGTATCTAGAAGAAGAAGA 239
||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 179 GAGGACTCGGATCGCACTTAACCTAAAGAACGTAGCGTACGAGTATCTAGAAGAACAAGA 238
Query 240 TACTTTGAGTTCGGAGAGCGTTTTAAACTATAACCCCGTCCATAAACAGATCCCTATCCT 299
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TACATTGAATTCGGAGAGCGTTTTAAACTATAACCCCGTCCATAAACAGATCCCTATCCT 298
Query 300 CATTCATGGCAACAAACCAATCCGTGAATCTCTCAACATCGTCATGTATGTTGATGAGAC 359
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 CATCCATGGCAACAAACCAATCCGTGAATCCCTCAACATCGTCATGTATGTTGATGAGAC 358
Query 360 TTGGCTCTCCGGTCCTCCCATCCTTCCCTCTGATCCATTTGATCGCGCTGTGGCTCGATT 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 TTGGTTCTCCGGTCCTCCCATCCTTCCCTCTGATCCATTTGATCGCGCTGTGGCTCGCTT 418
Query 420 TTGGGACGTCTATATCGATGAACACTGTTTCACATCAATCAATGGAGTGGCAGTAGCAAA 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 TTGGGACGTCTATATCGATGAACACTGTTTCACATCAATTAATGGAGTGGCAGTAGCAAA 478
Query 480 AGGTGAGGAGAACATAAATGCGGCGATAGCTAAGCTAGAGCAGTGTATGGCTCTATTGGA 539
| |||||| | | ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 AAACGAGGAGGAGAGAAAGGCGGCGATAACTAAGCTAGAGCAGTGTATGGCTCTATTGGA 538
Query 540 AGAAACGTTTCAAGAATGCAGCAAAGGAAGAGGCTTCTTTGGAGGAGAAAACATCGGGTT 599
||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 539 AGAAACGTTTCAAGAATGCAGCAAAGGCAGAGGCTTCTTTGGAGGAGAAAATATTGGATT 598
Query 600 CATCGACATTGGTTTCGGCTCGATGTTGGGTCCTCTTACGGTTCTTGAGAAATTTACCGG 659
||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 599 CATTGACATTGGTTTCGGCTCGATGTTGGGTCCTCTTAAGGTTCTCGAGAAATTTACCGG 658
Query 660 CGTCAAGTTCATACATCCTGAAAACACACCAGGTCTTTTCCATTGGGCTGACAGATTCTA 719
|||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||
Sbjct 659 CGTCAAGTTCATACATCCCGAAAACACACCAGGTCTATTCCTTTGGGCAGACAGATTCTA 718
Query 720 CGCCCATGAAGCGGTCAAGCCTGTCATGCCCGATATCGAAAAACTGGTCCAGTTCGCTAG 779
||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 719 CGCACATGAAGCAGTCAAGCCTGTCATGCCAGATATCGAAAAACTGGTCGAGTTCGCTAA 778
Query 780 GCTCAAGTTCAATACTTCAATCTTTAAATGAAAA-CCAAGGACTTATAAA-TATATATAC 837
||||||||||||||||||||| ||||||| |||| ||||| | || |||| |||||||||
Sbjct 779 GCTCAAGTTCAATACTTCAATTTTTAAATAAAAAGCCAAG-ATTT-TAAAATATATATAC 836
Query 838 GACGACTAAATTAACATAATCGAG 861
|||||| |||| ||||||||||||
Sbjct 837 GACGAC-AAATGAACATAATCGAG 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5