BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69935.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926296 jgi|Araly1|926296|scaffold_201857.1 926 0.0
> Ahg926296 jgi|Araly1|926296|scaffold_201857.1
Length=622
Score = 926 bits (501), Expect = 0.0
Identities = 581/618 (94%), Gaps = 11/618 (2%)
Strand=Plus/Plus
Query 24 TGTTACTCTCTCTGCTCACAAATGGCCGCAGCT---ACAACAACCTTATCATCATCTTCA 80
||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |
Sbjct 1 TGTTAGTCTCTCTGCTCACCAATGGCCGCAGCTACAACAACAACCTTATCATCATC-T-- 57
Query 81 TCATCACCATCGCTAACTCTCATCAATGCCTCACACAGATTTGTCTCTGTAACTCCCTTC 140
|||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 58 TCAT---CATCGCTAAATCTCATCAATGCCTCACACAGATTTGTCTCTGCAACTCCTTTC 114
Query 141 TCTTCTAACTCTATATTCCTCCGCCGCCGAT-TCCGCCGCCTAAATCGCTCACTCGCTTC 199
||||| |||||||| ||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 115 TCTTCGAACTCTATCTTCCTCCGCCGTCG-TATCCGCCGCCTAAATCGCTCACTCGCTTC 173
Query 200 GTCTAGCTCCCACTCGCGTAGGCGATACGAATCAGACGATAGATTCTTCGGCGGTGGTGA 259
|| |||||| || |||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 174 GTATAGCTCTCAGTCGCGTAGGCGATACGAAGCAGACGATCGATTCTTCGGCGGTGGTGA 233
Query 260 CAATTACGATGTTGTTCCCGATGACGACGGATTTAGCGACGATGATGATGAAGAAGACGA 319
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 234 CAAGTACGATGTTGTTCCTGATGACGACGGATTTAGCGACGATGATGATGAAGACGACGA 293
Query 320 AAGAGAAAGCAGTGTCGATCTTTTGATCAGATTCTTGAGAAGCATGTTCAAGAAAGTCTC 379
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 294 AAGAGAAAGCAGTGTCGATCTTTTGATTAGATTCTTGAGAAGTATGTTCAAGAAAGTCTC 353
Query 380 GAAACGAACTAAAAAAGCATCGCGACGGATTTTGCCAGCTGCCATGTCTCCTCGACTCGT 439
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 354 AAAACGAGCTAAAAAAGCATCGCGACGGATTTTGCCAGCAGCCATGTCTCCTCGACTCGT 413
Query 440 GTCTTTTGCAGTAGATGGGATATTGTTATTAGGTTCACTTTCCATTACAAGAGCATTTCT 499
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 414 GTCTTTTGCAGTAGATGGGATATTGTTATTGGGTTCACTTTCAATAACAAGAGCATTTCT 473
Query 500 TGAGGTAATATGCAATCTAGGAGGAACTGTGTTTACGGTGATTCTGCTGATACGGTTGTT 559
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 474 TGAGGTAATATGCAATCTAGGAGGAACTGTGTTTACGGTGATTCTGCTGATCCGGTTGTT 533
Query 560 CTGGGCGGCAGCTTCGTTCTTCCAGACTTATGGGAACTCTTTTGGACCAAACCCGGTAAA 619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTGGGCGGCAGCTTCGTTCTTCCAGACTTATGGGAACTCTTTTGGACCAAACCCGGTAAC 593
Query 620 TTAAAACCTTGTTTTACT 637
||||||||||||||||||
Sbjct 594 TTAAAACCTTGTTTTACT 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5