BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69940.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325356 jgi|Araly1|325356|fgenesh1_pm.C_scaffold_6000576 1773 0.0
> Ahg325356 jgi|Araly1|325356|fgenesh1_pm.C_scaffold_6000576
Length=1086
Score = 1773 bits (960), Expect = 0.0
Identities = 1044/1086 (96%), Gaps = 0/1086 (0%)
Strand=Plus/Plus
Query 88 atGGGATACACAAATGTGTCCATTTTATTAGGCCTGTTGATGGTCTTTGTTACACCGATG 147
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1 ATGGGATACACAAATGTGTCCATTTTATTAGGCCTGTTGGTGGTCTTTGTTTCACCGGTG 60
Query 148 GTGTTCGCAGATGATGTGACACCAATCCCAGAGGGCAAACCCCAAGTGGCGCAGTGGTTC 207
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GTGTTCGCAGATGATGTGACACCAATCCCAGAGGCCAAACCCCAAGTGGCGCAGTGGTTC 120
Query 208 AATGCCAACGTTGGTCCATTGGCTCAACGTAAAGGCTTAGATCCTGCTCTTGTAGCTGCT 267
|| |||||||| | |||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 121 AAGGCCAACGTCGCTCCATTGGCTCAACGTAAAGGCTTAGATCCAGCTCTCGTTGCTGCT 180
Query 268 GAGGCTGCTCCACGTATCATCAACGTGAATCCAAAGGGTGGTGAATTCAAAACACTAACG 327
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GAGGCTGCTCCACGTATCATCAACGTGAATCCAAAGGGAGGTGAATTCAAAACACTAACG 240
Query 328 GACGCAATAAAGAGCGTTCCTGCAGGGAACACAAAGCGGGTGATCATAAAGATGGCTCCT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACGCAATAAAGAGCGTTCCTGCAGGGAACACAAAGCGGGTGATCATAAAGATGGCTCCT 300
Query 388 GGTGAATACAAAGAGAAGGTCACTATCGACAGGAACAAACCCTTCATTACATTGATGGGA 447
|| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGGGAGTACAGAGAGAAGGTCACTATCGACAGGAACAAACCCTTCATTACATTGATGGGA 360
Query 448 CAACCCAATGCCATGCCTGTTATCACCTATGACGGTACCGCCGCCAAGTATGGAACCGTT 507
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 361 CAACCCGGTGCCATGCCTGTTATCACCTACGACGGTACCGCCGCCAAGTATGGAACAGTT 420
Query 508 GATAGCGCCTCTCTCATTATCTTATCCGACTATTTCATGGCCGTTAACATCGTCGTTAAG 567
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GATAGCGCCTCTCTCATTATCTTATCCGACTATTTCATGGCCGTTAACATCGTTGTTAAG 480
Query 568 AACACTGCGCCGGCACCAGATGGTAAAACTAAGGGAGCACAAGCTTTATCCATGAGAATC 627
|| ||||| ||||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 481 AATACTGCACCGGCGCCAGATGGTAAAACAAAGGGAGCACAAGCCTTATCTATGAGAATC 540
Query 628 TCCGGAAATTTTGCTGCTTTCTACAACTGCAAATTCTACGGTTTCCAAGACACAATCTGT 687
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCCGGAAACTTTGCTGCTTTTTACAACTGCAAATTCTACGGTTTCCAAGACACAATCTGT 600
Query 688 GACGATACAGGAAACCATTTCTTCAAGGATTGTTACGTTGAAGGAACATTCGATTTCATC 747
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GACGATACCGGAAACCATTTCTTCAAGGATTGTTACGTCGAAGGAACATTCGATTTCATC 660
Query 748 TTCGGAAGTGGAACCTCTATGTACTTGGGAACACAATTGCACGTGGTTGGAGACGGTATT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 TTCGGAAGTGGAACCTCTATGTACTTGGGAACACAATTGCACGTGGTTGGAGATGGTATT 720
Query 808 AGAGTGATAGCAGCGCATGCAGGAAAGAGCGCAGAAGAGAAGAGTGGATACTCTTTCGTG 867
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 721 AGAGTGATCGCAGCGCATGCAGGAAAGAGCGCAGAAGAGAAGAGCGGGTACTCTTTCGTG 780
Query 868 CACTGCAAGGTGACTGGAACCGGTGGAGGAATTTATTTGGGAAGAGCATGGATGAGCCAC 927
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 781 CACTGCAAGGTGACTGGAACCGGTGGTGGAATCTATTTGGGAAGAGCATGGATGAGTCAC 840
Query 928 CCTAAGGTTGTTTATGCCTACACCGAGATGACCAGCGTTGTCAACCCCACCGGATGGCAA 987
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCTAAGGTTGTCTATGCCTACACCGAGATGACCAGCGTTGTCAACCCCACCGGATGGCAA 900
Query 988 GAAAACAAGACTCCCGCACATGACAAAACCGTGTTCTACGGAGAGTACAAGTGTTCAGGA 1047
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 GAAAACAAGACTCCCGCACATGACAGGACCGTGTTCTACGGAGAGTACAAGTGTTCAGGA 960
Query 1048 CCAGGATCACACAAAGCCAAGAGAGTACCATTCACACAAGACATTGACGACAAAGAAGCT 1107
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 CCAGGATCACACAAAGCCAAGAGAGTGCCATTCACACAAGACATTGACGACAAAGAAGCT 1020
Query 1108 AACCGTTTCCTATCCCTCGGCTACATCCAAGGATCCAAGTGGCTTCTCCCACCACCCGCT 1167
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 AACCGTTTCCTTTCCCTCGGCTACATCCAAGGATCCAAGTGGCTTCTCCCACCACCAGCT 1080
Query 1168 TTGTAA 1173
||||||
Sbjct 1081 TTGTAA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5