BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69960.1 Length=1281 Score E Sequences producing significant alignments: (Bits) Value Ahg476122 jgi|Araly1|476122|fgenesh2_kg.2__1252__AT1G69960.1 1862 0.0 > Ahg476122 jgi|Araly1|476122|fgenesh2_kg.2__1252__AT1G69960.1 Length=1222 Score = 1862 bits (1008), Expect = 0.0 Identities = 1174/1250 (94%), Gaps = 28/1250 (2%) Strand=Plus/Plus Query 32 AAATACAAAGTTCCAACAAAAATCGAAATTCACAATTTCTCTTCTTCTAAATCCATGGAG 91 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATACAAAGTTCCAACGAAAATCGAAATTCACAATTTCTCTTCTTCTAAATCCATGGA- 59 Query 92 TGATGATGATGATAGATAGATTGAATCCAAACACAAACCGGATCCGAGATTAAAAACAAT 151 | ||||||||||||||||| ||||||| || | | | || ||| || | |||| Sbjct 60 -G-TGATGATGATAGATAGAGTGAATCC-AA-TC--A-C-GAACCG-GA-T-----CAAT 104 Query 152 CCGGATTGTTTATATTTACTTTAGATCGGAGAAAGATGCCGCCGGCGACCGGAGATATCG 211 |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 105 CCGGATTG-----------TTTAGATCGGAGAAAGATGCCGCCGGCGACCGGAGATATCG 153 Query 212 ATCGTCAGATCGAGCAGCTTATGGAGTGTAAAGCGTTATCTGAAACGGAGGTGAAGATGT 271 ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 154 ATCGTCAGATCGAACAGCTTATGGAGTGTAAACCGTTATCTGAAGCGGAGGTGAAGATGT 213 Query 272 TGTGTGAGCACGCAAAGACGATTCTTGTGGAAGAGTATAATGTTCAACCGGTTAAATGTC 331 |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 214 TGTGTGAGCAAGCGAAGACGATTCTTGTGGAGGAGTATAATGTTCAACCGGTTAAATGTC 273 Query 332 CGGTTACCGTCTGCGGTGATATCCACGGCCAATTTTACGATCTAATCGAGCTTTTTCGTA 391 |||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| | Sbjct 274 CGGTTACCGTCTGCGGCGATATCCATGGCCAATTTTACGATCTGATTGAGCTTTTTCGGA 333 Query 392 TCGGTGGTTCTTCTCCTGATACTAATTATCTTTTCATGGGTGATTATGTTGATCGAGGGT 451 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 334 TCGGTGGTTCTTCTCCTGATACTAATTATCTTTTCATGGGCGATTATGTTGATCGAGGGT 393 Query 452 ATTATTCTGTGGAGACAGTCTCACTTTTGGTAGCACTGAAAGTTCGTTACAGAGATAGAC 511 |||||||||||||||| || || ||||||||||| ||||||||||| ||||| ||||||| Sbjct 394 ATTATTCTGTGGAGACGGTTTCGCTTTTGGTAGCGCTGAAAGTTCGCTACAGGGATAGAC 453 Query 512 TTACTATCCTAAGAGGGAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGGTTTTATG 571 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 454 TTACTATCCTAAGAGGGAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGATTTTATG 513 Query 572 ATGAATGTTTGAGGAAATATGGAAATGCTAATGTATGGAAGCACTTCACTGATCTTTTTG 631 |||| || |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| Sbjct 514 ATGAGTGCTTGAGGAAATATGGGAATGCGAATGTGTGGAAGCACTTCACTGACCTTTTTG 573 Query 632 ATTATCTTCCACTTACAGCTCTTATTGAGAGTCAGGTTTTCTGTTTACATGGAGGACTTT 691 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 574 ATTATCTTCCTCTTACAGCTCTCATTGAGAGTCAGGTTTTCTGTTTACATGGGGGACTTT 633 Query 692 CACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGGTTCCAC 751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 634 CACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGGTTCCAC 693 Query 752 ATGAAGGACCAATGTGTGATCTCTTATGGTCTGATCCAGATGACCGATGCGGTTGGGGAA 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 694 ATGAAGGACCAATGTGTGATCTCTTATGGTCTGATCCAGATGACCGATGCGGTTGGGGAA 753 Query 812 TATCTCCTCGTGGTGCAGGCTACACTTTCGGACAAGATATCGCTACTCAGTTTAACCACA 871 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 754 TATCTCCTCGTGGTGCAGGCTACACTTTTGGACAAGATATCGCTACTCAGTTTAACCACA 813 Query 872 CCAATGGACTCTCTCTGATTTCAAGAGCACATCAACTTGTCATGGAAGGTTTTAATTGGT 931 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 814 CCAATGGACTCTCTCTGATTTCAAGAGCACACCAACTTGTCATGGAAGGTTATAATTGGT 873 Query 932 GCCAAGAAAAGAACGTTGTGACTGTATTTAGTGCCCCAAACTATTGCTACCGTTGTGGCA 991 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 874 GCCAAGAAAAGAACGTTGTTACTGTATTTAGTGCCCCAAACTATTGCTACCGTTGTGGCA 933 Query 992 ACATGGCTGCGATTCTAGAGATCGGTGAGAACATGGACCAGAATTTCCTTCAGTTTGATC 1051 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 934 ATATGGCTGCGATTCTAGAGATCGGTGAGAACATGGACCAGAATTTCCTTCAGTTTGATC 993 Query 1052 CAGCTCCACGTCAAGTCGAACCCGAAACCACTCGCAAGACTCCAGATTATTTTTTGTAAG 1111 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 994 CAGCTCCACGTCAAGTCGAACCTGAAACCACTCGCAAGACTCCAGATTATTTTTTGTAAG 1053 Query 1112 TACCAAAAGAACTAAAGCTGCAATTCCACACACTAGCTCTTCGTCTCTTTTGCTTCTATT 1171 ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| Sbjct 1054 TACCAAAAGAACTAAAGTTGCAATTCCACACACTAGCACTTTGTCTCTTTTGCTTCTATT 1113 Query 1172 CTTAACCACTTTTTGTAATTTCATATTCCTTACGTCTATTTCTGTTTGTTAAACTCTCCA 1231 ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| Sbjct 1114 CTTAACCACTTTTTGTAATCTCATATTCCTTATGTCTATTTCTGTTTGCGAAACTCTCCA 1173 Query 1232 TTGTCTTTTAAAATCCGTAATTTTTTGTGTGCAAAGATTCTGGTCCAAGT 1281 |||||||| |||||| |||||||||| ||||||||||||||||| ||||| Sbjct 1174 TTGTCTTTAAAAATCAGTAATTTTTT-TGTGCAAAGATTCTGGTTCAAGT 1222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47882383752 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5