BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69960.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476122 jgi|Araly1|476122|fgenesh2_kg.2__1252__AT1G69960.1 1862 0.0
> Ahg476122 jgi|Araly1|476122|fgenesh2_kg.2__1252__AT1G69960.1
Length=1222
Score = 1862 bits (1008), Expect = 0.0
Identities = 1174/1250 (94%), Gaps = 28/1250 (2%)
Strand=Plus/Plus
Query 32 AAATACAAAGTTCCAACAAAAATCGAAATTCACAATTTCTCTTCTTCTAAATCCATGGAG 91
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATACAAAGTTCCAACGAAAATCGAAATTCACAATTTCTCTTCTTCTAAATCCATGGA- 59
Query 92 TGATGATGATGATAGATAGATTGAATCCAAACACAAACCGGATCCGAGATTAAAAACAAT 151
| ||||||||||||||||| ||||||| || | | | || ||| || | ||||
Sbjct 60 -G-TGATGATGATAGATAGAGTGAATCC-AA-TC--A-C-GAACCG-GA-T-----CAAT 104
Query 152 CCGGATTGTTTATATTTACTTTAGATCGGAGAAAGATGCCGCCGGCGACCGGAGATATCG 211
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 105 CCGGATTG-----------TTTAGATCGGAGAAAGATGCCGCCGGCGACCGGAGATATCG 153
Query 212 ATCGTCAGATCGAGCAGCTTATGGAGTGTAAAGCGTTATCTGAAACGGAGGTGAAGATGT 271
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 154 ATCGTCAGATCGAACAGCTTATGGAGTGTAAACCGTTATCTGAAGCGGAGGTGAAGATGT 213
Query 272 TGTGTGAGCACGCAAAGACGATTCTTGTGGAAGAGTATAATGTTCAACCGGTTAAATGTC 331
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 214 TGTGTGAGCAAGCGAAGACGATTCTTGTGGAGGAGTATAATGTTCAACCGGTTAAATGTC 273
Query 332 CGGTTACCGTCTGCGGTGATATCCACGGCCAATTTTACGATCTAATCGAGCTTTTTCGTA 391
|||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| |
Sbjct 274 CGGTTACCGTCTGCGGCGATATCCATGGCCAATTTTACGATCTGATTGAGCTTTTTCGGA 333
Query 392 TCGGTGGTTCTTCTCCTGATACTAATTATCTTTTCATGGGTGATTATGTTGATCGAGGGT 451
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 334 TCGGTGGTTCTTCTCCTGATACTAATTATCTTTTCATGGGCGATTATGTTGATCGAGGGT 393
Query 452 ATTATTCTGTGGAGACAGTCTCACTTTTGGTAGCACTGAAAGTTCGTTACAGAGATAGAC 511
|||||||||||||||| || || ||||||||||| ||||||||||| ||||| |||||||
Sbjct 394 ATTATTCTGTGGAGACGGTTTCGCTTTTGGTAGCGCTGAAAGTTCGCTACAGGGATAGAC 453
Query 512 TTACTATCCTAAGAGGGAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGGTTTTATG 571
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 454 TTACTATCCTAAGAGGGAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGATTTTATG 513
Query 572 ATGAATGTTTGAGGAAATATGGAAATGCTAATGTATGGAAGCACTTCACTGATCTTTTTG 631
|||| || |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 514 ATGAGTGCTTGAGGAAATATGGGAATGCGAATGTGTGGAAGCACTTCACTGACCTTTTTG 573
Query 632 ATTATCTTCCACTTACAGCTCTTATTGAGAGTCAGGTTTTCTGTTTACATGGAGGACTTT 691
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 574 ATTATCTTCCTCTTACAGCTCTCATTGAGAGTCAGGTTTTCTGTTTACATGGGGGACTTT 633
Query 692 CACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGGTTCCAC 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGGTTCCAC 693
Query 752 ATGAAGGACCAATGTGTGATCTCTTATGGTCTGATCCAGATGACCGATGCGGTTGGGGAA 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 ATGAAGGACCAATGTGTGATCTCTTATGGTCTGATCCAGATGACCGATGCGGTTGGGGAA 753
Query 812 TATCTCCTCGTGGTGCAGGCTACACTTTCGGACAAGATATCGCTACTCAGTTTAACCACA 871
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 754 TATCTCCTCGTGGTGCAGGCTACACTTTTGGACAAGATATCGCTACTCAGTTTAACCACA 813
Query 872 CCAATGGACTCTCTCTGATTTCAAGAGCACATCAACTTGTCATGGAAGGTTTTAATTGGT 931
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 814 CCAATGGACTCTCTCTGATTTCAAGAGCACACCAACTTGTCATGGAAGGTTATAATTGGT 873
Query 932 GCCAAGAAAAGAACGTTGTGACTGTATTTAGTGCCCCAAACTATTGCTACCGTTGTGGCA 991
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GCCAAGAAAAGAACGTTGTTACTGTATTTAGTGCCCCAAACTATTGCTACCGTTGTGGCA 933
Query 992 ACATGGCTGCGATTCTAGAGATCGGTGAGAACATGGACCAGAATTTCCTTCAGTTTGATC 1051
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 ATATGGCTGCGATTCTAGAGATCGGTGAGAACATGGACCAGAATTTCCTTCAGTTTGATC 993
Query 1052 CAGCTCCACGTCAAGTCGAACCCGAAACCACTCGCAAGACTCCAGATTATTTTTTGTAAG 1111
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 994 CAGCTCCACGTCAAGTCGAACCTGAAACCACTCGCAAGACTCCAGATTATTTTTTGTAAG 1053
Query 1112 TACCAAAAGAACTAAAGCTGCAATTCCACACACTAGCTCTTCGTCTCTTTTGCTTCTATT 1171
||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1054 TACCAAAAGAACTAAAGTTGCAATTCCACACACTAGCACTTTGTCTCTTTTGCTTCTATT 1113
Query 1172 CTTAACCACTTTTTGTAATTTCATATTCCTTACGTCTATTTCTGTTTGTTAAACTCTCCA 1231
||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1114 CTTAACCACTTTTTGTAATCTCATATTCCTTATGTCTATTTCTGTTTGCGAAACTCTCCA 1173
Query 1232 TTGTCTTTTAAAATCCGTAATTTTTTGTGTGCAAAGATTCTGGTCCAAGT 1281
|||||||| |||||| |||||||||| ||||||||||||||||| |||||
Sbjct 1174 TTGTCTTTAAAAATCAGTAATTTTTT-TGTGCAAAGATTCTGGTTCAAGT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5