BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69970.1

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476123 jgi|Araly1|476123|fgenesh2_kg.2__1253__AT1G69970.1         455    1e-127


> Ahg476123 jgi|Araly1|476123|fgenesh2_kg.2__1253__AT1G69970.1
Length=332

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 282/299 (94%), Gaps = 3/299 (1%)
 Strand=Plus/Plus

Query  1    ATGCGAAATAACCATTCCCTTCGTCTCCAATTGTGGTTCCGTACACTATTTACTGTTGGT  60
            ||||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  1    ATGCGAAATCACCACTCCCTTCGTCTCCAATTGTTGTTCCGTACACTATTTACGGTTGGT  60

Query  61   GTAGTC---ACTCTTCTTATGATCGATGCGTTTGTATTACAAAACAACAAGGAGGACGAC  117
             |||||   ||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct  61   TTAGTCAGTACTCTTCTTATGATCAATGCGTTTGTATTACAAAACAACAAGGAGGGCGAC  120

Query  118  AAAACAAAAGAGATTACTACAGCTGTGAACATGAACAACTCCGATGCCAAGGAAATACAA  177
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAAACGAAAGAGATTACTACAGCTGTGAACATGAACAACTCCGATGCCAAGGAAATACAA  180

Query  178  CAAGAGCTTGAAGATGGTTCAAGGAACGACGATCTTAGCTACGTAGCAAGCAAAAGAAAA  237
            ||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||
Sbjct  181  CAAGAGCTTGAAGATGGTTCAAGAAACGGCGATCTTAGTTACGTAGCGAGCAAAAGAAAA  240

Query  238  GTGCCTCGTGGACCTGATCCTATACACAACAGGTTCTTACTACTTTCTCGTTTTATTTT  296
            |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  241  GTGCCTCGTGGACCTGATCCTATACACAACAGGTTCTTACTAATTTCTTGTTTTATTTT  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12705811137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5