BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69980.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476125 jgi|Araly1|476125|fgenesh2_kg.2__1255__AT1G69980.1 1094 0.0
> Ahg476125 jgi|Araly1|476125|fgenesh2_kg.2__1255__AT1G69980.1
Length=747
Score = 1094 bits (592), Expect = 0.0
Identities = 706/759 (93%), Gaps = 16/759 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAAGAAACAACAAAAATGGCTTCTCAGAGTTCTTCACTTTTTCTGGTTATCTTCT 60
|||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1 AAGAAGAAGAAACAGCAAAAATGGCTTCTCAGAGTTCTTCACTATTTCTGGTCACCTTCT 60
Query 61 TCATCTTCATCTACGCTTCTTCAATTCCATCCTCTATTCTCGCCAGAGCACATGAACATG 120
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 TCATCTTCATCTACGCTTCTTCAATTTCATCCTCTCTTCTCGCCAGAGCACATGAACATG 120
Query 121 ACGGAGATGAAGAGATCAGAAGCGTTGGGCGTAGATTCCTTCTAGGTTTCAAAGAAACTC 180
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 121 ACGGAGATGAAGAGATCAGAAGCGTTGGACGGAGATTACTTCTAGGTTTCAAAGAAACTC 180
Query 181 CAAAAGGAAGTAATATCACCTTCGCTTGTTCTCCTTCAGGTCCTTGTGTCTCTTGCAATT 240
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 181 CAAAAGGAAGTAATATCACCTTCGCATGTTCTCCTTCAGGTCCTTGTGTTTCTTGCAATT 240
Query 241 CCTCCGAAAAGAGAAAAGAGAAGTATCGTTGCAGTGAAACTGGTTATCGTATTCC-TTTC 299
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 CCTCTGAAAAGAGAAAAGAGAAGTATCGTTGTAGTGAAACTGGTTATCGTATTCCATTT- 299
Query 300 AAATGTAAAGAGGTTAGAGAAGAAGTGGATGCACATAAGAAAAATGGAGAAGAAGAAACA 359
|||||||||||| | ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 300 AAATGTAAAGAGATGAGAGAAGAAGTGGATCCACACAAGAAAAATGGAGAAGAAGAAACA 359
Query 360 CAAAATGATCAATCGAATAACAATGACGAAGAAGCGAAAACAAGGAATCTGTTGGATGAT 419
|||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 360 AAAAATGATCAATCGAA---CAATGAGGAAGAAGCGAAAACGAGGAATCTGTTGGATGAT 416
Query 420 TCATCACCGGCGACGAAAGTGAAGTCTCAGTCTTACAAAACTTATAGAAGCTGTGTGCCA 479
||| | | |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 417 TCA-C-C-GGCGTCGAAAGTGAAGTCTCAGTCTTACAAAACTTATCGAAGCTGTGTGCCT 473
Query 480 TCTGCAGACGAAGAGAAGTTATCAGTTCTTGGTTTTGAGTCGATTATGCTAGGACTGTTT 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCTGCAGATGAAGAGAAGTTATCAGTTCTTGGTTTTGAGTCGATTATGCTAGGACTGTTT 533
Query 540 CTGT-TAAGCGGAGCTGCTATTTACATCAGAAAGAGACAGACGGTACCGATGCTTGGGGT 598
| | |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 534 TT-TATAAGCGGAGCTGCTATATACATCAGAAAGAGACAGACAGTACCGATGCTTGGGGT 592
Query 599 ATCATCAAGTGGAAGATTGCAAGGCAATTCTCGGTTTTGAAAGAACCATTTCTCGGTATG 658
||| | ||||||||| ||| |||| |||||||||| |||||||| ||||||||||||
Sbjct 593 GTCA--A-GTGGAAGATCACAAAGCAAATCTCGGTTTTAAAAGAACCCTTTCTCGGTATG 649
Query 659 TAAAAGCTTTCATCTGCTCACTCAGAAACAGATTTAACATTTGTCATTGTCTGTTGAAA- 717
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TAAA-GCTTTCATCTACTCACTCAGAAACAGATTTAACATTTGTCATTGTCTGTTGAAAA 708
Query 718 GATGAGA-TATGTTTGAGTGTATAGAATAGCTTTAGGGG 755
|| |||| |||| ||||||||||||||||||||||||||
Sbjct 709 GACGAGAATATGCTTGAGTGTATAGAATAGCTTTAGGGG 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5