BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70000.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476127 jgi|Araly1|476127|fgenesh2_kg.2__1257__AT1G70000.1 957 0.0
Ahg948169 jgi|Araly1|948169|scaffold_800056.1 117 2e-25
> Ahg476127 jgi|Araly1|476127|fgenesh2_kg.2__1257__AT1G70000.1
Length=1144
Score = 957 bits (518), Expect = 0.0
Identities = 669/738 (91%), Gaps = 25/738 (3%)
Strand=Plus/Plus
Query 1 TCTTTACCTTTTTCATTCCAAAAtctctctctctctctctctctttctctGGCTCGGGAA 60
|||||||||||||||||||||||| |||||||||||||||||| | ||| | || | |
Sbjct 1 TCTTTACCTTTTTCATTCCAAAATATCTCTCTCTCTCTCTCTCCCTATCT--CGCGAGCA 58
Query 61 G--AAGATGTCACGTAGTTGCTCACAGTGTGGAAACAACGGCCACAACTCTCGCACATGT 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GCTTCCATGTCACGTAGTTGCTCACAGTGTGGAAACAACGGCCACAACTCTCGCACATGT 118
Query 119 CCGACGGACATAACTACCACCGGTGACAACAA---CGACAAAGGCGGCGGGGAGAAAGCC 175
|| || || ||||| | |||||| || ||||| || || |||||||| |||||||||
Sbjct 119 CCAACAGAGATAACCAGCACCGGCGATAACAACGGCGGCAGCGGCGGCGGAGAGAAAGCC 178
Query 176 ATCATGCTTTTTGGCGTCCGCGTCACGGAAGCTTCATCATCTTGTTTTAGAAAAAGTGTT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATCATGCTTTTTGGCGTCCGCGTCACGGAAGCTTCATCATCTTGTTTTAGAAAAAGTGTT 238
Query 236 AGTATGAACAATCTCTCTCAATTCGATCAAACTCCTGATCCCAACCCAACCGATGACGGT 295
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 239 AGTATGAACAATCTCTCTCAATTCGATCAAACTCCTGATCCCAACCCCGCCGATGACGGT 298
Query 296 GGTTACGCTTCAGACGACGTCGTTCACGCCTCCGGTAGAAACCGTGAACGCAAACGAGGA 355
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 299 GGTTACGCTTCAGACGACGTCGTTCACGCCTCCGGTAGAAACCGCGAACGCAAACGAGGA 358
Query 356 ACTCCATGGACAGAGGAAGAACATAGATTGTTTCTTACTGGATTGCATAAAGTTGGAAAA 415
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 ACTCCATGGACAGAGGAAGAACATAGATTGTTTCTTACTGGATTGCATATAGTTGGAAAA 418
Query 416 GGTGATTGGAGAGGAATCTCTAGAAACTTTGTTAAAACTCGAACACCTACTCAGGTAGCG 475
|||||||||||||| || || |||||||||||||||||||||||||| |||||||| |||
Sbjct 419 GGTGATTGGAGAGGCATTTCAAGAAACTTTGTTAAAACTCGAACACCGACTCAGGTCGCG 478
Query 476 AGTCATGCTCAGAAATATTTTCTCCGGCGGACTAATCAGAATCGTCGTCGTCGTAGATCA 535
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 479 AGCCATGCTCAGAAATATTTTCTCCGGCGGACTAATCAGAATCGCCGTCGTCGTAGATCA 538
Query 536 AGCCTCTTCGATATCACTCCCGATTCGTTTATAGGATCAT-CAAAAGAAGAGAATCAGTT 594
||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||| ||
Sbjct 539 AGCCTCTTCGACATCACTCCCGATTCGTTTAAAGGATC-TGCAAAAGAAGAGAATCTCTT 597
Query 595 ACAGACTCCATTGGA-G---C-----TAATCCGTCCAGTTCCGATTCCTATTCCGATTCC 645
|| ||||||||||| | | |||||||||| ||||||||||| |||||||||||
Sbjct 598 GCATACTCCATTGGATGGATCAAAACTAATCCGTCCGGTTCCGATTCCGATTCCGATTCC 657
Query 646 ACCGTCGCGGAAGATGGCTGATTTGAATCTTAA-CAAGaaaaaaaCTCCAGC-GACAACG 703
||||||||||| ||||| |||||||||||||| || ||||| ||| ||| |||||||
Sbjct 658 TCCGTCGCGGAAAATGGCAGATTTGAATCTTAATCA-GAAAA---CTC-AGCCGACAACG 712
Query 704 GAGATGTTTCCGCTGTCG 721
|||||||||||| |||||
Sbjct 713 GAGATGTTTCCGTTGTCG 730
Score = 449 bits (243), Expect = 2e-125
Identities = 339/380 (89%), Gaps = 28/380 (7%)
Strand=Plus/Plus
Query 795 CCTCGGGGTTCGAGGCGATGTCGAGTAATGGAGATAGTATAATGGGAGTGGCTTGATGAA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CCTCGGGGTTCGAGGCGATGTCGAGTAATGGAGATAGTATAATGGGAGTGGCTTGATGAA 818
Query 855 GAAGATAATGTTTTAATTAATTTATATTGTATAAGATAAGATCTGGATGATGATTAATTT 914
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct 819 GAAGATAATGTTTTAATTAATTTATATTGTATAAGATAAGATCTGAATGATGGTTAATGT 878
Query 915 GAAATTTGAGAATTAGGCTAATTAGATACTTTGATCAGAATCAAGTGAGTTTTTAAGTTT 974
||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 879 GAAATTTGAGAATTAGGCTAATTAGATACTTTGAT--G--T----T---T------G--- 918
Query 975 GAATTAGTGTGTACATGtttttttGCTCTTTTTGGGGGAAACGACTTGTCGTTTTTGTTG 1034
|||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 919 -AATTAGTGTGTACATGTTTTTT-GCCCTTTTTGGGGGAAACTACTTGTCGTTTTTGTTG 976
Query 1035 TTGTATGATGTAAAACAACAGGTAGTCTCTGTGTTGTTTTGGTCAAGACTTGATCAGATT 1094
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 977 TTGTATGCTGTAAAACAACAGGTAGTCTCTGGGTTGTTTTGGTCAAGACTTCATCAGATT 1036
Query 1095 CAGAAGTGAAGACGACTTCAAGCTTAAGATAGTT-TA-GATGTGTC--T-T-TTGAAAAG 1148
||||||||||||| ||||||||||||| |||||| || | |||||| | | ||||||||
Sbjct 1037 CAGAAGTGAAGACTACTTCAAGCTTAAAATAGTTATATGTTGTGTCAGTCTCTTGAAAAG 1096
Query 1149 TTTAAACAGAATGGTTATTG 1168
|| ||| |||||||||||||
Sbjct 1097 TTAAAATAGAATGGTTATTG 1116
> Ahg948169 jgi|Araly1|948169|scaffold_800056.1
Length=1209
Score = 117 bits (63), Expect = 2e-25
Identities = 120/147 (82%), Gaps = 6/147 (4%)
Strand=Plus/Plus
Query 352 AGGAACTCCATGGACAGAGGAAGAACATA-GATTGTTTCTTACT-GGATTGCATAAAG-T 408
||||||||||||||||||||||||||||| || || |||||| | || || || ||| |
Sbjct 369 AGGAACTCCATGGACAGAGGAAGAACATAGGA-TG-TTCTTATTAGGTTTACA-GAAGCT 425
Query 409 TGGAAAAGGTGATTGGAGAGGAATCTCTAGAAACTTTGTTAAAACTCGAACACCTACTCA 468
|| ||||||||||||||||| ||||| ||||||| ||| | ||| | ||||| || ||
Sbjct 426 GGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCAACACA 485
Query 469 GGTAGCGAGTCATGCTCAGAAATATTT 495
|| || || ||||||||||| |||||
Sbjct 486 AGTTGCTAGCCATGCTCAGAAGTATTT 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5