BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70020.1
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908584 jgi|Araly1|908584|Al_scaffold_0002_1665 734 0.0
Ahg926304 jgi|Araly1|926304|scaffold_201865.1 294 6e-79
> Ahg908584 jgi|Araly1|908584|Al_scaffold_0002_1665
Length=675
Score = 734 bits (397), Expect = 0.0
Identities = 596/689 (87%), Gaps = 25/689 (4%)
Strand=Plus/Plus
Query 1 ATGGATTATGAAAACGGAGAAATAATAGCTCCTAAATCCACCACTTTATGGGATAGACTT 60
|||||||||| |||||||| ||| ||||||| || ||||| ||||||| | ||| |||
Sbjct 1 ATGGATTATGGAAACGGAG-AAT--TAGCTCCCAACCCCACCTCTTTATGTGCTAGGCTT 57
Query 61 ACACCACGACaaaaaaaGTATGTGTTCACGTGTGTCT-TGGt--ttttttG-ATCGCTAT 116
||||||| ||||||| | | | || || | | | | || | | ||| ||||||||
Sbjct 58 ACACCACAACAAAAAGA-CA-GAGTACA-GAAAAT-TATCGTCCTATGTTGCATCGCTAT 113
Query 117 C-GCAACCGCTGCAATT-ATCGTTTATGCCTACTCTGAAT-CAGCACAAGA-ACGACGTG 172
| | ||| | ||| ||| ||||| || || | || ||||||| | |||||||
Sbjct 114 CTTC-GTCGC-GGTATTCATCACTTATGTCTGCT-TTTATGAAGCACAA-ATCCGACGTG 169
Query 173 AAAAACGGCGTAAAGAACAACGTAT-AGAAAACTATGCACCGGATATTATAATACCATCT 231
||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 170 AAAAACGGCGTGAAGAACAACGTATAAG-AAATTATGCACCGGATATTATAATACCATCT 228
Query 232 ATGGATTTCACAGTCCTTAATTTAACCGAGACTAGTCTTAGTGTTAAATGGGATTTAGTG 291
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 229 ATGGATTTCACGGTGCTTAATTTAACAGAGACTAGTCTTAGTGTTAAATGGGATTTAGTG 288
Query 292 ATCAGGCTTCCTTCAGATCTTCCTGGTTACTATATGTGTCTCAAAGGAGATTTGCAGACT 351
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 289 ATCAGACTTCCTTCAGACCTTCCTGGTTACTATATGTGTCTCAAAGGAGATTTTCAGACT 348
Query 352 TTCATACTTTACAAAGGTGTTACCATTGCTAATTCATCCTTAGACAGTTACAATCTGATA 411
|||||||| |||||||||||||||||||||||||| || ||||||||||||| | |||||
Sbjct 349 TTCATACTCTACAAAGGTGTTACCATTGCTAATTCGTCTTTAGACAGTTACAGTTTGATA 408
Query 412 CCAAATTGGCCTCAGCTGCTTAATACCTCATCGGTAATTGCTTCTGAGGGAGATATGGAC 471
||||||||||||||||||||||||||||| || | ||||||| ||| |||||||||||
Sbjct 409 CCAAATTGGCCTCAGCTGCTTAATACCTCCTCATTGGTTGCTTCCGAGAGAGATATGGAC 468
Query 472 AGTGTTGTTGTGAAAGACATTATGGACGATATAAAGGAAAGAAGAGACATGCGGTTCGGA 531
| ||| |||||| | ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 469 AATGTGGTTGTGCATGACATTATGGAGGATATTAAGGAAAGAAGAGACATGCGGTTCGGA 528
Query 532 TCGA-GGTTGCTTCTTCCGGATTGTAGATCTGGGAGGAAGATGAACTATACGTGTGATGA 590
|| | | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TC-ACGATTTCTTCTTCCGGATTGTAGATCTGGGAGGAAGATGAACTATACGTGTGATGA 587
Query 591 AACTGCGGTT-CGGTTTGAGCCTGGCTCTCAAAGGAAGGCAACTGCGTTTGAAAACGCCG 649
||| ||| || |||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 588 AACCGCG-TTACGGTTTGAGCCTGGCTCTCAAAGGAAGGCAACTGAGTTTCAAAAAGCCT 646
Query 650 CTCCTATATGCCACTATATTCACACTTAA 678
|||||||||||||||||| |||| |||||
Sbjct 647 CTCCTATATGCCACTATAATCACCCTTAA 675
> Ahg926304 jgi|Araly1|926304|scaffold_201865.1
Length=553
Score = 294 bits (159), Expect = 6e-79
Identities = 236/273 (86%), Gaps = 5/273 (2%)
Strand=Plus/Plus
Query 399 TTACAATCTGATACCAAATTGGCCTCAGCTGCTTAATACCTCATCGGTAATTGCTTCTGA 458
|||||||||||||| | ||||| | ||| |||||||| ||||| ||||||||| ||
Sbjct 260 TTACAATCTGATACTAGATTGGGCGCAGTTGCTTAATGTTTCATC---AATTGCTTCCGA 316
Query 459 GGGAGATATGGACAGTGTTGTTGTGAAAGACATTATGGACGATATAAAGGAAAGAAGAGA 518
|||||||||||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 317 GGGAGATATGGATAGTGTGGTTATGAAAGACATTATGGAGGATATTAAGGAAAGAAGAGA 376
Query 519 CATGCGGTTCGGATCGAGGTTGCTTCTTCCGGATTGTAGATCTGGGAGGAAGATGAACTA 578
|||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 377 CATGCGGTTCGGATCGCGGTTGCTTCTTCCGGATTGCAGATCTGGGAGGACGATGAACTA 436
Query 579 TACGTGTGATGAAACTGCGGTT-CGGTTTGAGCCTGGCTCTCAAAGGAAGGCAACTGCGT 637
||| ||||||||| | | || ||||| ||||||||| ||||||||||||||| |||||
Sbjct 437 TACATGTGATGAATCCATG-TTGCGGTTCGAGCCTGGCACTCAAAGGAAGGCAAATGCGT 495
Query 638 TTGAAAACGCCGCTCCTATATGCCACTATATTC 670
||| ||||| ||| || || || |||||| |||
Sbjct 496 TTGGAAACGACGCACCCATTTGTCACTATGTTC 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5