BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70030.1
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476128 jgi|Araly1|476128|fgenesh2_kg.2__1258__AT1G70030.1 1018 0.0
> Ahg476128 jgi|Araly1|476128|fgenesh2_kg.2__1258__AT1G70030.1
Length=738
Score = 1018 bits (551), Expect = 0.0
Identities = 682/744 (92%), Gaps = 13/744 (2%)
Strand=Plus/Plus
Query 1 AAGTCTTTTGTATCTTCCTGTAAGCCTGTTACGTGTGAGCACTTGCCAGTTGTCAGTTTC 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTCTTTTGTATCTGCCTGTAAGCCTGTTACGTGTGAGCACTTGCCAGTTGTCAGTTTC 60
Query 61 AAAACCATGGTTGCAAATAAGAAGCTAACTACAACCGATGCACTTGATTTCCTCCAT-CT 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 61 AAAACCATGGTTGCAAATAAGAAGCTAACTACAAATGATGCACTTGATTTCCTCAAGGCT 120
Query 120 TGTAAAA-ACTAAATATCAAGATAATCGTGAAATATATGATAGTTTTCTTACGATCATGA 178
|||||| | |||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 121 -GTAAAAGA-TAAATATCAAGATAATCGTGAAATATATGAGAGATTTCTTACGGTCATGA 178
Query 179 AGGATTTCAGAGGTCAGAGAGCTAAAACATGTGACGTCATATCAAAAGTGAAAGAACTCT 238
|||| |||| || ||| |||||| | |||||||| |||||||| | ||||||||||||||
Sbjct 179 AGGACTTCAAAGCTCAAAGAGCTCATACATGTGATGTCATATCTAGAGTGAAAGAACTCT 238
Query 239 TCAAAGGGCAACCAGAGCTTCTCTTAGGTTTCAACACATTCTTGCCAACGGGGTTT-GAA 297
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 239 TCAAAGGGCAACCAGAGCTTCTCTTAGGTTTCAACACATTCTTGCCAATGGG-TTTCGAG 297
Query 298 ATAACACTC-AGTGATGACGAACTTACGTCAAATTCGAAGTTTGCTCACTTTGACGAAGC 356
||||||||| | |||||| ||| | | ||||||| ||||| ||||||||||||||| ||
Sbjct 298 ATAACACTCGAA-GATGACCAACGTCCATCAAATTTGAAGTCTGCTCACTTTGACGATGC 356
Query 357 ATATGAATTTGTCAACAAGGTCAAGACAAGATTTCAGAACAATGATGTATTCAACTCATT 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 ATATGAATTTGTCAACAAGGTCAAGACAAGATTTCAGAACAATGATGTATTCAAGTCATT 416
Query 417 TTTAGAGGTTTTGAAAACGCATAAAAAGGAAAACAAGAGCGTTGCTGAGCTCTACCAGGA 476
|||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 417 TTTAGACGTTTTAAAAACGTATAAAAAGGAAAACAAGAGCTTTGCTGAGCTCTACCAGGA 476
Query 477 GGTGGCTATCCTTTTTCAAGGCCATCGAG-ACTTGCTTGAGGAATTTCATCTCTTTCTTC 535
|||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 477 GGTGGCTATCCTTTTTCAAGGCCATC-AGGACTTGCTTGAGGAATTTCATCAGTTTCTTC 535
Query 536 CACATTATGGATGAAGAATGATGAATTATGTATACAA-TGAAGCCATGCAAGTTGTGGTT 594
| ||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||||||
Sbjct 536 CTCATTATGGATGAAGAATGATGCATTATGTATACAAATGAAGTCATGAAAGTTGTGGTT 595
Query 595 CAAAGCCACTTTATCTGCTTCCAT-TTGACTCAATGGGGATTATCATTAGTTTGTTGCTG 653
||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 596 CAA-GCCACTTTATCTGCTTCCATCTTGACTCAATGGGCATTATCCTTAGTTTGTTGCTG 654
Query 654 AACTGGTAAAACTAGTACTCAATTTTTCAAGTTGTTTTATACTATTTAAACTGAATATTA 713
|||||||||||||||||||| || |||||||||||||||||||||| ||| |||||| ||
Sbjct 655 AACTGGTAAAACTAGTACTCTATGTTTCAAGTTGTTTTATACTATTCAAAATGAATAATA 714
Query 714 TGGATAATACACAAATTATTTATC 737
|||||| | ||||| |||| ||||
Sbjct 715 TGGATACTCCACAACTTATATATC 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27143516904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5