BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70040.1 Length=805 Score E Sequences producing significant alignments: (Bits) Value Ahg476129 jgi|Araly1|476129|fgenesh2_kg.2__1259__AT1G70040.1 863 0.0 > Ahg476129 jgi|Araly1|476129|fgenesh2_kg.2__1259__AT1G70040.1 Length=628 Score = 863 bits (467), Expect = 0.0 Identities = 578/631 (92%), Gaps = 9/631 (1%) Strand=Plus/Plus Query 1 ATGGCAGACGAAGAACTATCTATAGGAGTGCGGATCTTCGTTTCTTTTCTCATAGCCTTT 60 |||||||| ||||||| | |||||||| | || ||||| |||||||| ||||||||||| Sbjct 1 ATGGCAGATGAAGAACAAAATATAGGAGAGAGGGTCTTCTTTTCTTTTGTCATAGCCTTT 60 Query 61 GGTATTTGTGGTCTGGTTTTGT-TGATGATAAAAGACAATTCTGGCAAAATCCCGGTGCC 119 |||||||||||| ||||||| | |||||| || |||||||||| |||||||||||||||| Sbjct 61 GGTATTTGTGGTTTGGTTTT-TATGATGACAATAGACAATTCTCGCAAAATCCCGGTGCC 119 Query 120 GAAAATAGAGTTAGCTTCAATGGATTTCACGGTGCAAAATATTACAATGACTCGTCTTAA 179 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 120 GAAAATAGAATTAGCTTCTATGGATTTCACGGTGCAAAATATTACAATGACTCGTCTCAG 179 Query 180 TGCAAAATGGGATTTGTCGATAAGGATCCCTGATGATCTTCCTGGTAAGTATATATGTCT 239 |||||| ||||||||||| |||||||||||||||| |||||||||| ||||||||||||| Sbjct 180 TGCAAAGTGGGATTTGTCTATAAGGATCCCTGATGGTCTTCCTGGTCAGTATATATGTCT 239 Query 240 TCAAGGAGACCTTGAAGCTTCCTTGCTTTACAAGAATGTCACTCTTGCTACCTCATCCCC 299 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCAAGGAGACCTTCAAGCTTCCTTGCTTTACAAGAATGTCACTCTTGCTACCTCATCCCA 299 Query 300 ACAAAAATACTACAATCTCAAATACT-TCAATCCTCAGCTTCTTAAGATTTCAGCTAATG 358 ||||||||||||||||||||||||| | |||||||||||||||||| ||||||| | || Sbjct 300 ACAAAAATACTACAATCTCAAATACGAT-AATCCTCAGCTTCTTAAGGTTTCAGCGATTG 358 Query 359 TTTCCGAAGTAGATATTGGCGGTTTGATTGGAAAAAATATTATTAACGATGTCAAAGAGA 418 ||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 359 TTTCCGACGAAGATATTGGCGGTTTGATTGGTAAAGATATTATTAACGATGTCAAAGAGA 418 Query 419 GGAAAGAAGTACACTTCGGATCGCGATTTTCTCTCACGGATTGTAGAGAA-AAAACGACA 477 ||||||||||||| ||||||||||| ||||||||||||||||| ||| || ||||||||| Sbjct 419 GGAAAGAAGTACAGTTCGGATCGCGGTTTTCTCTCACGGATTGCAGA-AAGAAAACGACA 477 Query 478 GGAGTTATGAGTTATGAGTGTGACGAAGCCACCTTGCGGTTCGAGCCAAGCTCTGAGATG 537 ||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||| Sbjct 478 GGAGTTATGAGTTATGAGTGTAATGAAGCCACCTTGAGGTTCGAGCCAGGCTCTGAGATG 537 Query 538 AAGGCGACAATGTTTGGGGACCATCCAAACTGCATCAATGTTTGACCAAAGTCCATGTCA 597 |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| Sbjct 538 AAGGCGACAATGTTTGGGAACCATCCAAACTGCATTAATATTTGACCAAAGTCCATGTCA 597 Query 598 T---CACCATGCCAGTTCATTGTTATATTTT 625 | |||| | ||||||||||||| |||||| Sbjct 598 TGATCACCGTACCAGTTCATTGTTTTATTTT 628 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29735875260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5