BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70040.1
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476129 jgi|Araly1|476129|fgenesh2_kg.2__1259__AT1G70040.1 863 0.0
> Ahg476129 jgi|Araly1|476129|fgenesh2_kg.2__1259__AT1G70040.1
Length=628
Score = 863 bits (467), Expect = 0.0
Identities = 578/631 (92%), Gaps = 9/631 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGACGAAGAACTATCTATAGGAGTGCGGATCTTCGTTTCTTTTCTCATAGCCTTT 60
|||||||| ||||||| | |||||||| | || ||||| |||||||| |||||||||||
Sbjct 1 ATGGCAGATGAAGAACAAAATATAGGAGAGAGGGTCTTCTTTTCTTTTGTCATAGCCTTT 60
Query 61 GGTATTTGTGGTCTGGTTTTGT-TGATGATAAAAGACAATTCTGGCAAAATCCCGGTGCC 119
|||||||||||| ||||||| | |||||| || |||||||||| ||||||||||||||||
Sbjct 61 GGTATTTGTGGTTTGGTTTT-TATGATGACAATAGACAATTCTCGCAAAATCCCGGTGCC 119
Query 120 GAAAATAGAGTTAGCTTCAATGGATTTCACGGTGCAAAATATTACAATGACTCGTCTTAA 179
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 120 GAAAATAGAATTAGCTTCTATGGATTTCACGGTGCAAAATATTACAATGACTCGTCTCAG 179
Query 180 TGCAAAATGGGATTTGTCGATAAGGATCCCTGATGATCTTCCTGGTAAGTATATATGTCT 239
|||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 180 TGCAAAGTGGGATTTGTCTATAAGGATCCCTGATGGTCTTCCTGGTCAGTATATATGTCT 239
Query 240 TCAAGGAGACCTTGAAGCTTCCTTGCTTTACAAGAATGTCACTCTTGCTACCTCATCCCC 299
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCAAGGAGACCTTCAAGCTTCCTTGCTTTACAAGAATGTCACTCTTGCTACCTCATCCCA 299
Query 300 ACAAAAATACTACAATCTCAAATACT-TCAATCCTCAGCTTCTTAAGATTTCAGCTAATG 358
||||||||||||||||||||||||| | |||||||||||||||||| ||||||| | ||
Sbjct 300 ACAAAAATACTACAATCTCAAATACGAT-AATCCTCAGCTTCTTAAGGTTTCAGCGATTG 358
Query 359 TTTCCGAAGTAGATATTGGCGGTTTGATTGGAAAAAATATTATTAACGATGTCAAAGAGA 418
||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 359 TTTCCGACGAAGATATTGGCGGTTTGATTGGTAAAGATATTATTAACGATGTCAAAGAGA 418
Query 419 GGAAAGAAGTACACTTCGGATCGCGATTTTCTCTCACGGATTGTAGAGAA-AAAACGACA 477
||||||||||||| ||||||||||| ||||||||||||||||| ||| || |||||||||
Sbjct 419 GGAAAGAAGTACAGTTCGGATCGCGGTTTTCTCTCACGGATTGCAGA-AAGAAAACGACA 477
Query 478 GGAGTTATGAGTTATGAGTGTGACGAAGCCACCTTGCGGTTCGAGCCAAGCTCTGAGATG 537
||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||||||
Sbjct 478 GGAGTTATGAGTTATGAGTGTAATGAAGCCACCTTGAGGTTCGAGCCAGGCTCTGAGATG 537
Query 538 AAGGCGACAATGTTTGGGGACCATCCAAACTGCATCAATGTTTGACCAAAGTCCATGTCA 597
|||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 538 AAGGCGACAATGTTTGGGAACCATCCAAACTGCATTAATATTTGACCAAAGTCCATGTCA 597
Query 598 T---CACCATGCCAGTTCATTGTTATATTTT 625
| |||| | ||||||||||||| ||||||
Sbjct 598 TGATCACCGTACCAGTTCATTGTTTTATTTT 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29735875260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5