BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70090.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476133 jgi|Araly1|476133|fgenesh2_kg.2__1263__AT1G70090.1 2255 0.0
Ahg472678 jgi|Araly1|472678|fgenesh2_kg.1__2632__AT1G24170.1 1009 0.0
Ahg937924 jgi|Araly1|937924|scaffold_502115.1 159 4e-38
> Ahg476133 jgi|Araly1|476133|fgenesh2_kg.2__1263__AT1G70090.1
Length=1576
Score = 2255 bits (1221), Expect = 0.0
Identities = 1456/1563 (93%), Gaps = 41/1563 (3%)
Strand=Plus/Plus
Query 20 TTCTTTAACTCTTTGAGTTATTTATTTCCAGAAGCTTCATAGTTTCTGGAAAATGCTA-A 78
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTCTTGAACTCTTTGAG-TAATTATTTCCAGAAGCTTCATAGTTTCTGGAAAATGCTAGA 59
Query 79 TCCACTAGCGGAAT-AAAAGACAGATCTTTAATCCACTTTAGAAACCGCGTTTTCTGAAA 137
||| ||||||||| ||||| |||||| || | | |||||||||||||||||| |
Sbjct 60 -CCAGTAGCGGAATAAAAAG-CAGATC-TT--T--A---GAGAAACCGCGTTTTCTGATA 109
Query 138 ATGCGGTTGCGTTTTCCGATGAAATCTGCCG-TTTTAGCGTTTGCTATCTTTC-TGGTGT 195
|||||||||||||||||||||||||||| || |||| ||||||| | || ||| ||||||
Sbjct 110 ATGCGGTTGCGTTTTCCGATGAAATCTG-CGTTTTTTGCGTTTGTTGTC-TTCTTGGTGT 167
Query 196 TTATTCCACTGTTTTCCGTCGGTATACGGATGATTCCGGGAAGACTCACCGCCGTATCCG 255
||||||||| ||| |||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 168 TTATTCCACAGTTCTCCGTCGGAATACGGATGATTCCGGGAAGAATCTCCGCCGTATCCG 227
Query 256 CCACCGTCGGAAATGGCTTTGATCTGGGGTCGTTCGTGGAAGCTCCGGAGTACAGAAACG 315
|| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 228 TTACTGTGGGAAATGGATTTGATCTCGGGTCGTTCGTGGAAGCTCCGGAGTACAGAAACG 287
Query 316 GCAAGGAGTGCGTGTCTCAATCGTTGAACAGAGAAAACTTCGTGTCGTCTTGCGACGCTT 375
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 288 GCAAGGAGTGCGTGTCTCAATCGTTAAACAGAGAGAACTTCGTGTCGTCTTGCGACGCTT 347
Query 376 CGTTAGTTCATGTAGCTATGACGCTTGACTCGGAGTACTTACGTGGCTCAATCGCAGCCG 435
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 348 CGTTAGTTCATGTAGCTATGACGCTTGACTCAGAGTACTTACGTGGCTCAATCGCAGCCG 407
Query 436 TACATTCAATGCTCCGCCACGCGTCGTGTCCAGAAAACGTCTTCTTCCATCTCATCGCTG 495
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 408 TTCATTCTATGCTCCGCCACGCGTCGTGTCCAGAGAACGTCTTCTTCCATCTCATCGCTG 467
Query 496 CAGAGTTTGACCCGGCGAGTCCACGCGTTCTGAGTCAACTCGTCCGATCTACTTTCCCGT 555
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CAGAGTTTGACCCAGCGAGTCCACGCGTTCTGAGTCAACTCGTCCGATCTACTTTCCCGT 527
Query 556 CGCTAAACTTCAAAGTCTACATTTTCCGGGAAGATACGGTGATCAACCTTATCTCTTCTT 615
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 528 CGTTAAACTTCAAAGTCTACATTTTCCGAGAAGATACGGTGATCAACCTTATCTCTTCTT 587
Query 616 CAATCAGACAAGCTTTAGAGAATCCATTGAACTATGCTCGGAACTACCTCGGAGATATTC 675
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 588 CAATCAGACAAGCCTTAGAGAATCCATTGAACTACGCTCGGAACTATCTCGGAGATATTC 647
Query 676 TTGATCCATGCGTAGACAGAGTCATTTACCTAGACTCGGACATCATCGTCGTCGATGACA 735
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 648 TTGATCCATGCGTAGACAGAGTCATTTACCTTGACTCAGACATCATCGTCGTCGATGACA 707
Query 736 TAACAAAGCTTTGGAACACGAGTTTGACAGGGTCAAGAATCATCGGAGCTCCGGAGTATT 795
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 708 TAACAAAGCTTTGGAACACGAGTTTAACAGAGTCACGAATCATCGGAGCTCCGGAGTATT 767
Query 796 GTCACGCTAACTTCACAAAGTACTTCACTTCAGGTTTCTGGTCCGACCCGGCTTTACCCG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GTCACGCTAACTTCACAAAGTACTTCACTTCAGGTTTCTGGTCCGACCCGGCTTTACCCG 827
Query 856 GTTTCTTCTCGGGTCGAAAGCCTTGTTATTTCAACACGGGTGTGATGGTGATGGATCTAG 915
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 828 GATTCTTCTCGGGTCGAAAGCCTTGTTATTTCAACACGGGTGTGATGGTGATGGATCTTG 887
Query 916 TTAGATGGAGAGAAGGAAACTACAGAGAAAAGCTTGAAACTTGGATGCAGATACAGAAGA 975
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 888 TTAGATGGAGAGAAGGTAATTACAGAGAAAAGCTTGAAACTTGGATGCAAATACAGAAGA 947
Query 976 AGAAGAGAATCTACGATTTGGGTTCTTTGCCTCCGTTTCTTCTTGTCTTCGCAGGG-AAC 1034
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 948 AGAAGAGAATCTACGATTTGGGTTCTTTGCCTCCGTTTCTTCTTGTCTTCGC-GGGTAAC 1006
Query 1035 GTTGAAGCAATTGATCATAGGTGGAACCAACATGGTTTAGGAGGAGACAATGTACGAGGA 1094
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GTTGAAGCAATAGATCATAGATGGAACCAACATGGTTTAGGAGGAGACAATGTACGAGGA 1066
Query 1095 AGTTGTAGGTCTTTGCATAAAGGACCAGTGAGTTTGTTGCATTGGAGTGGTAAAGGTAAG 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AGTTGTAGGTCTTTGCATAAAGGACCAGTGAGTTTGTTGCATTGGAGTGGTAAAGGTAAG 1126
Query 1155 CCATGGGTGAGACTTGATGAGAAGAGACCGTGTCCGTTGGATCATTTATGGGAACCGTAT 1214
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1127 CCATGGGTTAGGCTTGATGAGAAGAGACCGTGTCCGTTGGATCATTTGTGGGAACCGTAT 1186
Query 1215 GATTTATATGAGCATAAGATTGAAAGAGCTAAAGATCAGTCTTTGTTCGGGTTCTCTTCT 1274
||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||
Sbjct 1187 GATTTATATGAGCATAAGATTGAAAGAGCTAAAGACCTGTCTTTGTTTGGGTTTTCTTCT 1246
Query 1275 TTGTCTGAGTTAACAGAAGATTCAAGCTTTTTCTGAAGAGTTTGTGTAAGTCAA-CAACA 1333
|||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||
Sbjct 1247 TTGTCTGAGTTAACAGAAGAATCAAGCTTTTTGTGAAGAGAGTGTGTAAGTCAAACAACA 1306
Query 1334 TTCTTTTTACTTGTTATT-GTAGTTTTGGGTTATTACAAATACATTGTTGAG--G---A- 1386
||||||| ||||||| || ||||||| ||||||||||||||||||||||||| | |
Sbjct 1307 TTCTTTT-ACTTGTTTTTTGTAGTTT-GGGTTATTACAAATACATTGTTGAGTTGTTGAG 1364
Query 1387 ---T-TTATTTTTT-GACTGTTGGTTGTGTAAAAATTGACTTGTGTGAGAGAAGAGTTTG 1441
| || |||||| ||||| |||| ||||||||||||||||||| |||| |||||||||
Sbjct 1365 AGATATTGTTTTTTTGACTGGTGGTGGTGTAAAAATTGACTTGTGAGAGA-AAGAGTTTG 1423
Query 1442 TAGAAGCTATTGATGAGGACTAGTTA-GAAGAATTCTTTGTTTGGAATTTGTATTTTGTT 1500
|||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||
Sbjct 1424 TAGAAGCTATTGATGAGGACTAGTTAAGA-GAATTCTTTGTTTGGAAAT-GTATTTTGTT 1481
Query 1501 GTGTTCTTT-CCCTAAATGGTTATGTTGATCTCAATTT-TCTGTATTTAGAGTCTTTTCA 1558
||||||||| |||||||||||| | ||||||||| ||| ||| | || |||| |||||||
Sbjct 1482 GTGTTCTTTACCCTAAATGGTTCTTTTGATCTCA-TTTGTCTATGTTGAGAGACTTTTCA 1540
Query 1559 AGA 1561
|||
Sbjct 1541 AGA 1543
> Ahg472678 jgi|Araly1|472678|fgenesh2_kg.1__2632__AT1G24170.1
Length=1588
Score = 1009 bits (546), Expect = 0.0
Identities = 895/1059 (85%), Gaps = 42/1059 (4%)
Strand=Plus/Plus
Query 283 GGT-CGTTCGTGGAAGCTCCGGAGTACAGAAACGGCAAGGAGTGCGTGTC-TCAATC-GT 339
||| |||| ||||||||||||| |||||||||||||||||||| ||||| || ||| |
Sbjct 309 GGTCCGTTTATGGAAGCTCCGGATTACAGAAACGGCAAGGAGTGTGTGTCGTC-ATCAG- 366
Query 340 TGAACAGAGAAAACTTCGTGTCGTC-T-TGC----GA-CGCTTCG-TTAGTTCATGTAGC 391
|||||||||| |||||||||||||| | | | || | ||||| || ||||| ||||
Sbjct 367 TGAACAGAGACAACTTCGTGTCGTCTTCTTCTAATGATC-CTTCGCTT-GTTCACATAGC 424
Query 392 TATGACGCTT-GACTCGGAGTACT-TACGTGGCTCAATCGCAGCCGTACATTCAATGCTC 449
|||||| || || || ||||| | | ||||| |||||||||||||| ||||| | |||
Sbjct 425 TATGAC-TTTGGATTCAGAGTA-TCTCCGTGGATCAATCGCAGCCGTTCATTCTGTTCTC 482
Query 450 CGCCACGCGTCGTGTCCAGAAAACGTCTTCTTCCATCTCATCGCTGCAGAGTTTGACCCG 509
||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||| ||
Sbjct 483 CGCCACGCGTCTTGTCCAGAGAACGTCTTCTTCCATTTCATCGCTGCTGAGTTTGACTCG 542
Query 510 GCGAGTCCACGCGTTCTGAGTCAACTCGTCCGATCTACTTTCCCGTCGCTAAACTTCAAA 569
|||||||| || || |||||||||||||| | || ||||| || ||||| ||||| |||
Sbjct 543 GCGAGTCCTCGTGTGCTGAGTCAACTCGTGAGGTCGACTTTTCCTTCGCTGAACTTTAAA 602
Query 570 GTCTACATTT-TCCGGGAAGATACGGTGATCAACCTTATCTCTTCTTCAATCAGACAAGC 628
|||||||||| | ||||||||||||||||||| || || || || || || ||||||||
Sbjct 603 GTCTACATTTAT-AGGGAAGATACGGTGATCAATCTCATATCGTCGTCGATTAGACAAGC 661
Query 629 TTTAGAGAATCCATTGAACTATGCTCGGAACTACCTCGGAGATATTCTTGATCCATGCGT 688
||| |||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 662 TTTGGAGAATCCGTTGAACTATGCTCGGAACTATCTCGGAGATATTCTTGATCGAAGCGT 721
Query 689 AG-ACAGAGTCATTTACCTAGACTCGGACATCATCGTC-GTCGATGACATAACAAAGCTT 746
| || |||||||||| || ||||| || | || | || ||||| || |||||||||
Sbjct 722 GGAAC-GAGTCATTTATCTTGACTCAGATGTTAT-AACTGTTGATGATATCACAAAGCTT 779
Query 747 TGGAACACGAG-TTTGACAGGGTCAAGAATCATCGGAGCTCCGGAGTATTGTCACGCTAA 805
||||||||| | |||||| |||||| | | |||||||||||||||||||||||||| ||
Sbjct 780 TGGAACACG-GTTTTGACCGGGTCACGGGTTATCGGAGCTCCGGAGTATTGTCACGCGAA 838
Query 806 CTTCACAAAGTACTTCACTTCAGGTTTCTGGTCCGACCCGGCTTTACCCGGTTTCTTCTC 865
|||||| |||| |||||||| || |||||||| |||||||||||||| ||| | ||||
Sbjct 839 CTTCACTCAGTATTTCACTTCCGGGTTCTGGTCAGACCCGGCTTTACCGGGTCTAATCTC 898
Query 866 GGGTCGAAAGCCTTGTTATTTCAACACGGGTGTGATGGTGATGGATCTAGTTAGATGGAG 925
||||| ||| ||||| ||||||||||| || ||||||||||||||||| || ||||||||
Sbjct 899 GGGTCAAAAACCTTGCTATTTCAACACAGGAGTGATGGTGATGGATCTTGTAAGATGGAG 958
Query 926 AGAAGGAAACTACAGAGAAAAGCTTGAAAC-TTGGATGCAGA-TACAGAAGAAGAAGAGA 983
|||||| || |||||||| ||||| | | | |||||||| | | |||||||||||||||
Sbjct 959 AGAAGGGAATTACAGAGAGAAGCTAG-AGCAATGGATGCA-ATTGCAGAAGAAGAAGAGA 1016
Query 984 ATCTACGAT-TTGGGTTCTTTGCCTCCGTTTCTTCTT-GTCTTCGCAGGGAACGTTGAAG 1041
||||||||| || || || || || ||||||||| || || || || || || |||||||
Sbjct 1017 ATCTACGATCTT-GGATCATTACCACCGTTTCTT-TTGGTGTTTGCTGGTAATGTTGAAG 1074
Query 1042 CAATTGATCATAGGTGGAACCAACATGGTTTAGGAGGAGACAATGTACGAGGAAGTTGTA 1101
| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1075 CTATTGATCATAGATGGAACCAACATGGTTTAGGAGGAGACAATATACGAGGAAGTTGTC 1134
Query 1102 GGTCTTTGCATAAAGGACCAGTGAGTTTGTTGCATTGGAGTGGTAAAGGTAAGCCATGGG 1161
|||| |||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGTCATTGCATCCTGGTCCTGTGAGTTTGTTGCATTGGAGTGGTAAAGGTAAGCCATGGG 1194
Query 1162 TGAGACTTGATGAGAAGAGACCGTGTCCGTTGGATCAT-TTATGGGAACCGTATGATTTA 1220
| |||||||||||||||||||| ||||||||||||||| || ||||| || ||||||||
Sbjct 1195 TTAGACTTGATGAGAAGAGACCTTGTCCGTTGGATCATCTT-TGGGAGCCATATGATTTG 1253
Query 1221 TATGAGCATAAGATTGAAAGAGCTAAAGATCAGTCTTTG-TTCGGGTTCT-CTTCTTTGT 1278
||| | ||||||||||| |||||||||||||||||| || || ||||| | ||||| |||
Sbjct 1254 TATAAACATAAGATTGAGAGAGCTAAAGATCAGTCTCTGCTT-GGGTT-TGCTTCTCTGT 1311
Query 1279 CTGAGTTAACAGAAGATTCAAGCTTTTTCTGAAGAGTTT 1317
| ||||| || || |||||||||||||| ||| ||||||
Sbjct 1312 CGGAGTTGACTGATGATTCAAGCTTTTTGTGA-GAGTTT 1349
> Ahg937924 jgi|Araly1|937924|scaffold_502115.1
Length=1066
Score = 159 bits (86), Expect = 4e-38
Identities = 227/293 (77%), Gaps = 18/293 (6%)
Strand=Plus/Plus
Query 879 TGTTATTTCAACACGGGTGTGATGGTGATGGATCTAGTTAGATGGAGAGAAGGAAACTAC 938
||||| |||||||| || |||||||| || || ||| | |||| | |||||| | ||
Sbjct 672 TGTTACTTCAACACCGGAGTGATGGTTATCGAGCTAAAGAAATGGCGCGAAGGAGATTAT 731
Query 939 A-GA-GAAAAGCTTGAAACTTGGATGCAGATACAGAAGAA--GA-AGAGAATCTACGATT 993
| || ||| | | | | | |||||| || |||| || || || | ||||||||||| |
Sbjct 732 ACGAGGAAGATCAT-AGA-GTGGATGGAGTTACA-AA-AACGGATA-AGAATCTACGAGT 786
Query 994 TGGGTTCTTTGCCTCCGTTTCTT-CTTGTCTTCGCAGGGAACGTTGAAGCAATTGATCAT 1052
| || ||||| || |||||| || ||||||||||| || ||| | | | | |||||
Sbjct 787 TAGGCTCTTTACCACCGTTT-TTACTTGTCTTCGCCGGAAACATAGCTCCGGTAGATCAC 845
Query 1053 AGGTGGAACCAACATGGTTTAGGAGGAGACAATGTAC-GAGGAAGT-TGTAG-GTCTTTG 1109
|||||||||||||||||||||||||||||||| | | |||| | | ||| | | ||||
Sbjct 846 CGGTGGAACCAACATGGTTTAGGAGGAGACAAT-TTCAGAGG-ACTGTGTCGAG-ATTTG 902
Query 1110 CATAAAGGACCAGTGAGTTTGTTGCATTGGAGTGGTAAAGGTAAGCCATGGGT 1162
||| ||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 903 CATCCAGGTCCAGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGT 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5