BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70100.3
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476134 jgi|Araly1|476134|fgenesh2_kg.2__1264__AT1G70100.1 1731 0.0
Ahg472677 jgi|Araly1|472677|fgenesh2_kg.1__2631__AT1G24160.1 257 2e-67
> Ahg476134 jgi|Araly1|476134|fgenesh2_kg.2__1264__AT1G70100.1
Length=1844
Score = 1731 bits (937), Expect = 0.0
Identities = 1268/1416 (90%), Gaps = 70/1416 (5%)
Strand=Plus/Plus
Query 209 AATTGTGTGGGCTATCTTCACTTTTTCAGGATTCTTTCTGGTGAGCATTAATGGTGGATA 268
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTTTGTGGGCTATCTTCACTTTTTCAGGATTCTTTCTGGTGAGCATTAATGGTGGATA 60
Query 269 TGGAAGTTGGTATTGCCAGTGGTGAAGATAAGATAACGACCGCGGCTTCATCGAATCAAG 328
|||||||||| | |||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 61 TGGAAGTTGGCACCGCCAATGGTGAAGATAAGATAATGACCGCAACTTCATCGAATCAAG 120
Query 329 AACTGCAAGTGTCTGTTTCGTTTGGTAAGTTTGAGAATGATTCACTTTCATGGGAGAAGT 388
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 AACTGCAAGTTTCTGTTTCGTTTGGTAAGTTTGAGAATGATTCACTGTCATGGGAGAAGT 180
Query 389 TTTCATCTTTTTCTCCAAACAAGTATTTGGAAGAAGTGGAGAAGTGTGCAACTGCTGGAT 448
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCATCTTTTTCTCCAAACAAGTACTTGGAAGAAGTGGAGAAGTGTGCAACTGCTGGAT 240
Query 449 CAGTAGCTCAGAAGAAGGCTTATTTCGAATCACATTACAAGAAGATTGCTGAGAGGAGAG 508
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 241 CAGTAGCTCAGAAGAAGGCTTATTTCGAATCACACTACAAGAAGATCGCTGAGAGGAGAG 300
Query 509 CTGATATCATCATGGAGCAGGAGAAACTTTTGGAGAGGAATGCATCTTTCAGGCCGAATA 568
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct 301 CTGATATTATCATGGAGCAGGAGAAACTATTGGAGAGAAATGCATCTTTCAGGCCGAGTG 360
Query 569 TTCAGAACCGGGAAAGAACAGACGATAGTGACAATGACGAGTCAATGATGATCGAGTTTA 628
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 361 TTCAGAACAGGGAAAAAACAGACGATAGTGACAATGACGAGTCAATGATGATTGAGTGTA 420
Query 629 GTACCGGTTATGGATCTAACGGTGAAAGTACTTCAGAAGAAGATAAGCTTGTGACC-GTC 687
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 421 GTGCCGGTTATGGATCTAACGGTGAAAGTACTTCAGAAGAAGATAAGCTTGTGACTAG-C 479
Query 688 ATTGTTACTGAAGTGAATGAGACATGTAACCATAAGCCTCTTGAAGAAACTATGGATTTC 747
|||| || || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTG---CT-AA-TGA--GA--CATGTAACCATAAGCCTCTTGAAGAAACTATGGATTTC 530
Query 748 AAGGAATGTCGAAGCTCGGTTGATACTGGGGATGATCTGAGTACCCTGAAGTTGGAGGAG 807
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 531 GTGGAATGTCGAAGCTCGGTTGATGCCGGGGATGATCTGAGTACCCTGAAGTTGGAGGAG 590
Query 808 AAACTTGAAGAGATTGTTCAAGTGGAGGATAAAGAGAAAGTAGAAGAGGTTATTTGTATG 867
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 591 AAACTTGAAGAGATTGTTCAAGTGGAGGATAAAGAGAAACTAGAAGAGGTTGTTTGTATG 650
Query 868 AAGGAAGAAGTAAAAGAAGATGTTCCATCAAAGGATACTGGAGAAATGAGTGAAACACTA 927
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 651 AAGGAAGAAGTAAAAGAAGATGTTCCATCAAAGGATACTGGAGAAATGAATGAAGCGCTA 710
Query 928 ATGAAGGAGACGAAGAAAGAGAAAGATCATAATCCAATCAAGAAGACTGATAAAAATGTG 987
|| ||||||||||||||||||| | | | |||||| ||||||||||||
Sbjct 711 ATAAAGGAGACGAAGAAAGAGA-----C-----CGA-----GAAGACAGATAAAAATGTG 755
Query 988 CGAACTAACCATATGAGAGCCTCTCCCAAGTCTAACCAGG-TGACGAAGAAACCGGTAAC 1046
||||| ||||||||||||||||||||||||||||| |||| | || |||||||||||| |
Sbjct 756 CGAACGAACCATATGAGAGCCTCTCCCAAGTCTAATCAGGCT-ACCAAGAAACCGGTAGC 814
Query 1047 GAGCAAGGTTGTAAGTGGTAGGAAAACTCAACCAAGCAAGGAAAAAAGCATGACAAAGGC 1106
||||||| |||||| ||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 815 GAGCAAGATTGTAACAAGTACGAAAACTCAATCAAGCAAGGAGAAAAGCATGACAAAGGC 874
Query 1107 AACAAATAAAGCAGCATCACCTGTTTTAAAACCTCCAGGGTTTTCAACTCCAAGAGTGTC 1166
|||||||||||||||||||||||| ||||||||||||| || |||| || | |
Sbjct 875 AACAAATAAAGCAGCATCACCTGTCTTAAAACCTCCAGC-TT--CAAC---AA---T--C 923
Query 1167 TAAGTCAGCTTCAACAATAAGTTCAATGTCTACTTCTCGCTCTTCAGTAAAGAAGGAAAG 1226
| | | | ||| | || | | || | ||||||||||||||||||| ||||
Sbjct 924 -A-G-C---T-CAA---T--GT-CTA---CT--T-CTCGCTCTTCAGTAAAGAAAGAAAA 964
Query 1227 TGTCTCAACTTTACTGAGAAAGAAACAAACCGCTCCAAAGTCATTGCCCATTTC-TCTCA 1285
|||||| |||||| |||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 965 TGTCTCGGCTTTACCGAGAAAGAAACAAACCGCTCCAAAGTCATTGCA-AGTTCCTCTCA 1023
Query 1286 ATGTGGATCAGTCG-GTCTCCGATCCTACTGCTGTTCCAACAACAAGAAAATCGTTGATC 1344
||||||||||||| | |||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1024 ATGTGGATCAGTCTTG-CTCCGATCTTACTGCTGTTCTAACAACAAGAAAATCCTTGATC 1082
Query 1345 ATGGAACGAATGGGAGATAAAGACATCGTTAGACGTGCATTTAAGAGTTTTCAGAAGAGT 1404
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1083 ATGGAACGAATGGGAGATAAAGACATCGTTAGACGTGCTTTTAAGACTTTTCAGAAGAGT 1142
Query 1405 TTCGACCAAATGAAATCTACTGATGATG-G---G--CAAGATACAGCTCCAAAGCAGGTT 1458
||| ||||||| ||| || ||| ||||| | | ||||||||| |||| |||||||||
Sbjct 1143 TTCAACCAAATTAAACCTTCTGGTGATGAGCAAGAGCAAGATACAACTCCTAAGCAGGTT 1202
Query 1459 CTTGCAAAGGCAACTGCTGTTCAGAGGTTAGGTACAACTGGTCAGAAAAAT-GTCAGGCT 1517
| |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 1203 CCTGCAAAGGCAACTGCTGTTCCGAGGTTAGGTACAACTGGTCAGAAAAATAG-CAGGCT 1261
Query 1518 TGCAAAATCAGATGGCACGGAGAGAAAAGGTCCTAACTCTCACCGTTCTTCATCTGTTGT 1577
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||
Sbjct 1262 TGCAAAATCAGATGGCACAGAGAGAAAAGGTTCTAACTCTCACCGTTCTTCGTCTTTTGT 1321
Query 1578 ATCAAAAAGCAACGGGACAGCCGAGAAACAGAAGGA 1613
|||||||||||||||| |||| ||||||||||||||
Sbjct 1322 ATCAAAAAGCAACGGGGCAGCTGAGAAACAGAAGGA 1357
Score = 503 bits (272), Expect = 2e-141
Identities = 350/388 (90%), Gaps = 4/388 (1%)
Strand=Plus/Plus
Query 1615 CCTTCTAGGCTTGGCACAAGAGCTGTAGAGAGGATACA-TTTACAGGCGAAACCGAAGGC 1673
||||| |||| |||| |||||||| | ||||||||||| | | |||| | ||||
Sbjct 1459 CCTTCCAGGCCTGGCGCAAGAGCTATGGAGAGGATACAGGCGATA-CCGAAGCATCAGGC 1517
Query 1674 AGAAGCAAGCAATGTCAAAACTCGGAGGCAAAGTCTAAATCCAAAAGAAAACCCCATTCA 1733
|||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1518 AGAAGCAACCAATGCCAAAACTCGGAGGCAAAGTCTAAATCCTAAAGAAAAATCCATTCA 1577
Query 1734 AGGACCTCTCCCAAAAGGCTATTCAGACAAAGTACTATGATGTAGCAGTCTTCATTTCAC 1793
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 1578 AGGACCTCTCCCAAAAGGCTATTCAGACAAAGTACTATGATGTAACAGACCTCATTTCAA 1637
Query 1794 GAACTTTGATATGTAACAGGTGA-CTATTGTTTTTATCTGATCTTCTGAAGCACAAGGCT 1852
|||||||| |||||||||| ||| | ||||||||| ||||||||||||||| |||||||
Sbjct 1638 GAACTTTGTTATGTAACAGATGAGC-ATTGTTTTTGTCTGATCTTCTGAAGTGCAAGGCT 1696
Query 1853 AAGGGCTCCACCAACATTTTTCAGCAAAAAGATCAAATATCTCCAAACTTTCAAATGATG 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1697 AAGGGCTCCACCAACATTTTTCAGCAAAAAGATCAAATATCTCCAAACTTTCAGATGATG 1756
Query 1913 TTTGTTATATAGAGAAGTCATTACGTTTGTGGAGAAGTAAGTATTATACAGTCTTGTGTC 1972
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1757 TTTGTGATATAGAGAAGTCACCACGTTTGTGGACAAGTAAGTATTATACAGTCTTGTGTC 1816
Query 1973 AATGTATGTGTATAGAGTCTGTAGACTA 2000
|||||||||||||||||||| |||||||
Sbjct 1817 AATGTATGTGTATAGAGTCTATAGACTA 1844
> Ahg472677 jgi|Araly1|472677|fgenesh2_kg.1__2631__AT1G24160.1
Length=1995
Score = 257 bits (139), Expect = 2e-67
Identities = 213/248 (86%), Gaps = 7/248 (3%)
Strand=Plus/Plus
Query 312 GGCTTCATCGAATCAAGA-ACTGCAAGTGTCTGTTTCGTTTGGTAAGTTTGAGAATGATT 370
|||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 217 GGCTTCATCGAA-CCCGAGCCTGCAAGTGTCGGTTTCATTTGGTAGGTTTGAGAATGATT 275
Query 371 CACTTTCATGGGAGAAGTTTTCATCTTTTTCTCCAAACAAGTATTTGGAAGAAGT-GGAG 429
||||||||||||||||||| ||| |||| |||||||||||||| ||||| ||||| |||
Sbjct 276 CACTTTCATGGGAGAAGTTCTCAGCTTTCTCTCCAAACAAGTACTTGGAGGAAGTTGGA- 334
Query 430 AAGTGTGCAACTGCTGGATCAGTAGCTCAGAAGAAGGCTTATTTCGAATCACATTACAAG 489
|||||||| ||| | |||||||| ||||| |||||||||||||| ||| | ||||| |||
Sbjct 335 AAGTGTGCTACTCCAGGATCAGTTGCTCAAAAGAAGGCTTATTTTGAAGCTCATTATAAG 394
Query 490 AAGATTGCTGAGAGGAGAGCTGATATCATCATGGAGCAGGAGAAACTTTTGGAGAGGAAT 549
|||||||||||||||| |||||| ||||| | | | ||||||||||| |||| | |||
Sbjct 395 AAGATTGCTGAGAGGAAAGCTGAGATCAT-A-G-ATCAGGAGAAACTAATGGATAAAAAT 451
Query 550 GCATCTTT 557
||||||||
Sbjct 452 GCATCTTT 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5