BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70110.1
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316003 jgi|Araly1|316003|fgenesh1_pm.C_scaffold_2001036 1341 0.0
Ahg316005 jgi|Araly1|316005|fgenesh1_pm.C_scaffold_2001038 667 0.0
> Ahg316003 jgi|Araly1|316003|fgenesh1_pm.C_scaffold_2001036
Length=1902
Score = 1341 bits (726), Expect = 0.0
Identities = 1129/1318 (86%), Gaps = 49/1318 (4%)
Strand=Plus/Plus
Query 373 AGCAAC-ATGGGAGATCCAAAAAATCATATAGTAGCTGTTGAGCTCGATA-C-TA-AAGT 428
|||||| || |||||||| |||||||||||| |||| ||||||||||||| | || |||
Sbjct 337 AGCAACGAT-GGAGATCCCAAAAATCATATAATAGCGGTTGAGCTCGATACCGTACAAG- 394
Query 429 TGACCAACAA-TTCGAGGACAAAG-ATGCTAACCATGTTGGCATTGATATCAATACTTTA 486
| || || || | ||| | | |||| ||||||||||| ||||| || ||||| ||
Sbjct 395 -G-CCCTGAAGTT-TATGAC-ATGAATGCCAACCATGTTGGTATTGACATAAATACCATA 450
Query 487 GTTTCAGATACAGTTGCTTTAGCGGGTTATTACATGGATAACGGTACATTTCGA-AG-TC 544
|||||||| | || ||||| ||| |||||||||| |||| | |||| |||| | || ||
Sbjct 451 GTTTCAGAAATAGCTGCTTCAGCAGGTTATTACAAGGATGATGGTAGATTT--ATAGATC 508
Query 545 TCTTGCTTAACAGTGGACAACCTATGCAAATCTGGATTGAGTATGACAGTAAACAGAAAC 604
|||||||| ||||||| | ||||||||| | |||||||| ||||| || ||||||| ||
Sbjct 509 TCTTGCTTGCCAGTGGAGACCCTATGCAAGTGTGGATTGAATATGATAGCAAACAGAGAC 568
Query 605 AGATTAATGTCACACTTCATCCTCTTTATGTCCCTAAGCCAAAGATTCCACTTCTTTCTC 664
|| |||| ||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 569 AGCTTAACGTCACACTTCATCCTATTCGTGTCCCTAAGCCAAAGATTCCACTCCTTTCTC 628
Query 665 TTGAAAAGGATCTTTCTCCATATTTGCTTGAACTTATGTATGTTGGATTCACTTCAACTA 724
|| |||||||||||||||| ||||||||||| ||||||| ||||||| | ||| | |
Sbjct 629 TTCAAAAGGATCTTTCTCCCTATTTGCTTGAGTTTATGTACCTTGGATTTTCCTCATCCA 688
Query 725 CAGGGGAC-CTAACTGCATCTCACTATATATTGGGATGGACGTTCAAGATGAATGGGACT 783
| ||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 689 C-GGGTACATTAACTGCATCTCACTATATATTGGGTTGGACGTTCAAGATTAATGGGACG 747
Query 784 ACTCCAGATATAGACCCCTCTCGCCTTCCCAAA-ATTCCTCGTTATAATCAGCCATGGAT 842
|||||| ||||||||||||||| ||| ||||| |||| |||| |||||||||||||||
Sbjct 748 GCTCCAGCTATAGACCCCTCTCGACTT-CCAAACGTTCCCCGTTTTAATCAGCCATGGAT 806
Query 843 CCAGAGTCCAAATGGGATTTTGACAATCAGTTTAACTGTATCAGGAGTCATCATACTCAT 902
|| ||||| || ||| |||| || |||||||| ||| ||||||| ||| |||||||||
Sbjct 807 CCGGAGTCTGAAGGGGGTTTTAACGATCAGTTTGACTATATCAGGCGTCGCCATACTCAT 866
Query 903 TATCTTGAGTCTCAGTTTATGGCTTTTCCTGAAGAGGAAGAAGCTATTGGAAGTTCTTGA 962
|||||| ||||||| ||||| |||| |||||||||||||||||| |||||||||||||
Sbjct 867 CATCTTGGGTCTCAGCATATGGTTTTTTCTGAAGAGGAAGAAGCTACTGGAAGTTCTTGA 926
Query 963 GGACTGGGAAGTTCAGTTTGGTCCTCATAGGTTTGCTTTCAAAGATCTGCATATTGCTAC 1022
||||||||| || ||||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 927 GGACTGGGAGGTGCAGTTTGGTCCTCATAGGTTTGCTTTCAAAGATCTACACACTGCAAC 986
Query 1023 AAAGGGTTTCAAGGATACTGAGGTTCTTGGTAAAGGAGGATTTGGGAAAGTCTATAAAGG 1082
||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||||| ||
Sbjct 987 AAAGGGTTTCAAGAATACAGAGCTTCTCGGTCAAGGAGGATTTGGGAAAGTCTATAAGGG 1046
Query 1083 AACTTTACCAGTGTCCAACGTAGAGATAGCGGTGAAGATG-GTTTCTCATGACTCAAGAC 1141
|||||||||||||||||||||||||| || ||||||| | ||||||||||| ||||| |
Sbjct 1047 TACTTTACCAGTGTCCAACGTAGAGATCGCTGTGAAGA-GAGTTTCTCATGATTCAAGGC 1105
Query 1142 AAGGAATGAGAGAGTTTATTGCTGAGATTGCAACCATTGGGCGTCTCAGACATCCTAACT 1201
| || ||||||| ||| ||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1106 AGGGCATGAGAGGGTTCATTGCTGAGATCGCAACCATTGGGCGTATCAGACATCCCAACT 1165
Query 1202 TAGTTCGGCTTCAAGGCTACTGCAGACACAAAGGTGAACTCTACTTGGTGTATGATTGTA 1261
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1166 TAGTTCGGCTCCAAGGTTACTGCAGACACAAAGGTGAACTCTACTTGGTATATGATTGTA 1225
Query 1262 TGGCCAAAGGAAGTCTTGATAAGTTCCTTTACCATCAACAGACTGGGAATCTTGATTGGT 1321
|| ||||||| || |||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 1226 TGCCCAAAGGCAGCCTTGATAAGTTCCTTTACGACCAACAGACTGGTAATCTTGATTGGT 1285
Query 1322 CACAGAGATTCAAGATCATCAAAGACGTAGCTTCTGGACTTTATTATTTGCACCAACAAT 1381
|||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 1286 CACAGAGATTTAAGATCATCAAAGACGTAGCTTCTGGGCTTTGTTTTTTGCACCAACAAT 1345
Query 1382 GGGTGCAGGTCATTATCCACAGGGATATTAAACCAGCCAACATCCTTCTTGACGCTAATA 1441
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1346 GGGTGCAGGTGATTATCCACAGGGATATTAAACCAGCCAACATCCTTCTTAACGCTAATA 1405
Query 1442 TGAATGCTAAACTTGGTGACTTTGGTCTCGCGAAGCTCTGCGATCATGGGACTGATCCTC 1501
||||||||||||||||||| |||||||||||||||||||| |||||| || ||| |
Sbjct 1406 TGAATGCTAAACTTGGTGATTTTGGTCTCGCGAAGCTCTG-GATCAT-GG---GAT--T- 1457
Query 1502 AGACCTCTCATGTGGCAGGTACACTTGGGTATATTTCACCTGAGCTCTCAAGAACAGGAA 1561
|| || | | || | || | | | || | | ||||||||||||||||||
Sbjct 1458 -GA--TC-C---T--CA-G-AC-C-T--CT-CATGT-GGC--AGCTCTCAAGAACAGGAA 1498
Query 1562 AGGCAAGTACAAGATCAGATGTATTTGCGTTTGGAATAGTGATGCTAGAGATTGCTTGCG 1621
||||||||||||| |||||||||||||| || ||| | || ||||||||||| || || |
Sbjct 1499 AGGCAAGTACAAGCTCAGATGTATTTGCATTCGGAGTGGTTATGCTAGAGATCGCATGTG 1558
Query 1622 GGCGAAAACCCATATTGCCACGAGCATCACAAAGAGAGATGGTACTGACTGATTGGGT 1679
| ||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 1559 GACGAAAGCCCATATTGCCACGAGCACCGCAAAGCGAGATGGTACTGACTGATTGGGT 1616
Score = 429 bits (232), Expect = 4e-119
Identities = 270/289 (93%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 1713 GGTTCTTGATCATAAGATTGGTCAGGAATATGTTGAGGAGCAAGCGGCACTTGTTCTGAA 1772
||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| ||
Sbjct 1614 GGTTCTTGATCATAAGATTGGGCAGGACTATGTCGAGGAGCAAGTGGCATTTGTTCTAAA 1673
Query 1773 ACTTGGCTTATTCTGTTCTCATCCAGTAGCAGCCATCAGACCAAACATGTCTAGCGTCAT 1832
||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1674 ACTCGGCTTACTCTGTTCTCATCCAGTACCAGCCATCAGACCAAACATGTCTAGCGTCAT 1733
Query 1833 TCAATTATTGGACAGTGTGGCTCAGCTTCCTCATAACTTACTTGACATTGTGCAAACTCG 1892
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1734 TCAATTCTTGGACAGTGTGGCTCAGCTTCCTGATAACTTACTTGACATTGTGCAAACTCG 1793
Query 1893 AGAAGTTCATCGAGGTACTGAAATCTCAGGTGAAGCAGCTGATTCTCCAGAGTCCTGTTC 1952
|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct 1794 AGAAATTCATCGAGGTACTGAAATCTCAGGTGGAGCAGCTGATTCTCCCGAGTCCAGTTC 1853
Query 1953 CATCGCTCCCTTGACCTTCACTGAATCCTTTGTCTCTCATGGTCGGTAA 2001
| | ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1854 CGTTGCTCCCTTGACCTTCACTGAATCCTTTGTTTCTCATGGTCGCTAA 1902
> Ahg316005 jgi|Araly1|316005|fgenesh1_pm.C_scaffold_2001038
Length=1983
Score = 667 bits (361), Expect = 0.0
Identities = 1037/1351 (77%), Gaps = 96/1351 (7%)
Strand=Plus/Plus
Query 577 TGGATTGAGTATGAC-AGTAAACAGAAACAGATTAATGTCACACTTCATCCTCTTTATG- 634
|||||||||||| || | | ||| ||| || || |||| ||| | ||| || || | |
Sbjct 565 TGGATTGAGTATAACAACTCAAC-TAAAAAGCTTGATGTTACAATGCATTCTATTCA-GA 622
Query 635 TCCCTAAGCCAAAGATTCCACTTCTTTCTC-TT--GAAAAGGATCTTTCTCCATATTTGC 691
| ||||||| |||||||| | | ||| || || | ||| ||||||||| | ||| | |
Sbjct 623 TTTCTAAGCCTAAGATTCCTC-TGTTT-TCGTTGCGGAAA-GATCTTTCTTCGTATCTAC 679
Query 692 TTGAACT-TATGTATGTTGGATTCACTTCAACTACAGG-GGACCTAACTGCATCTCACTA 749
|| | | |||||| |||| |||||||| | | ||| | || |||| | ||||||||
Sbjct 680 GTG-AGTATATGTACATTGGCTTCACTTC-AGT--AGGAAGTCC-AACTTCTTCTCACTA 734
Query 750 TA-TATTGGGATGGACGTTCAAGATGAATGGGACTA-CTCCAGATATAGACCCCTCTCGC 807
| | || || |||| ||||| | | ||| || | | |||||||| | | ||||||
Sbjct 735 CATTCTT-GGCTGGAATTTCAACAACACTGGAAC-AGTTTCAGATATAAATCTCTCTCGT 792
Query 808 CTTCCC-AAAATTCCTCG-TTATA-ATC-AGCCATGGATC-CAGAG-TCCAAATGGGATT 861
| |||| ||| | || || | | | ||| || || || | ||| ||| || |||
Sbjct 793 C-TCCCTAAAGTACC-CGATGA-AGATCAAG--ATCGAGCGTTGAGTTCC-AA---GATC 843
Query 862 TTGACAATCAGTTTAACTGTATCAGGAGTCATCA-TACTCATTATCTTGAG-TCTCAG-T 918
||| | || ||||||| | | |||||||| | || | | || ||||| | ||| | |
Sbjct 844 TTGGCGATTAGTTTAAGTATTTCAGGAGTTA-CACTTGTTATCGTCTTG-GTTCTTGGAT 901
Query 919 TTATGGCTT-TTCCTGAAGAGGAAGAAGCTATTGGAAGTTCTTGAGGACTGGGAAGTTCA 977
|||| | || ||| |||||||||||||| | |||||||| ||||||||||||| || ||
Sbjct 902 TTAT-G-TTCTTCTTGAAGAGGAAGAAGTTCTTGGAAGTGATTGAGGACTGGGAGGTACA 959
Query 978 GTTTGGTCCTCATAGGTTTGCTTTCAAAGATCTGCAT-ATTGCTAC-AAAGGGTTTCAAG 1035
|||||||||||||| || ||| ||||||||| | | || || || ||| |||||||||
Sbjct 960 GTTTGGTCCTCATAAATTCACTTACAAAGATCT-CTTCATCGCCACTAAA-GGTTTCAAG 1017
Query 1036 GATA-CTGAGGTTCTTGGTAA-AGGAGGATTTGGGAAAGTCTAT-AAAGGAACT-TTACC 1091
| | | ||| ||||||| || |||||| ||||| ||||||| | || |||| | |||||
Sbjct 1018 AACAGC-GAGCTTCTTGG-AAGAGGAGGTTTTGGAAAAGTCT-TCAAGGGAA-TCTTACC 1073
Query 1092 AG-TGTCCAACGTAGA--GATAGCGGTGAAGATGGTTTCTCATGACTCAAGACAAGGAAT 1148
| ||| | | ||| | ||| ||||| |||| | |||||||||| ||||||||||||||
Sbjct 1074 -GTTGT-CTA-GTATACCGATCGCGGTAAAGAAGATTTCTCATGATTCAAGACAAGGAAT 1130
Query 1149 GAGAGAGTTTATTGCTGAGATTGCAACCATTGGGCGTCTCAGACATCCTA-ACTTAGTTC 1207
|||||||||| | |||||||| || |||||||| | || |||||||| | | |||||||
Sbjct 1131 GAGAGAGTTTGTGGCTGAGATCGCGACCATTGGTAGACTTAGACATCC-AGATTTAGTTC 1189
Query 1208 GGCTTCAAGGCTACTGCAGACACAAAGGTGAACTCTACTTGGTGTATGA-TTGTATGGCC 1266
| |||| || |||||||||| |||||| |||||||||||||| ||||| || ||| ||
Sbjct 1190 GTCTTCTCGGGTACTGCAGACGCAAAGGAGAACTCTACTTGGTCTATGACTTC-ATGCCC 1248
Query 1267 AAAGGAAGTCTTGATAAGTTCCTTTACCATCAAC-AGACTGGGAAT-CTTGATTGGTCAC 1324
|||||||||||||||||||| ||||| |||||| | | | ||| |||||||||||||
Sbjct 1249 AAAGGAAGTCTTGATAAGTTTCTTTATAATCAACCAAA-TCA-AATTCTTGATTGGTCAC 1306
Query 1325 AGAGATTCAAGATCATCAAAGACGTAGCTTCTGGACTTTATTATTTGCACCAACAATGGG 1384
||||||||||||||||||||||||| || || ||||| | || ||||| || || ||||
Sbjct 1307 AGAGATTCAAGATCATCAAAGACGTTGCCTCGGGACTCTGCTACTTGCATCAGCAGTGGG 1366
Query 1385 TGCAGGTCATTATCCACAGGGATATTAAA-CCAGCCAACATCCTTCTTGACGCTAATATG 1443
| ||||| ||||||||||||||||| ||| ||||| || || |||||||| | ||||||
Sbjct 1367 TTCAGGTGATTATCCACAGGGATAT-AAAGCCAGCAAATATTCTTCTTGATGAAAATATG 1425
Query 1444 AATGCTAAACTTGGTGACTTTGGTCTCGCGAAGCTCTGCGATCATGGGACTGATCCTCAG 1503
|| || || || ||||| ||||| || |||||||| || || || |||| |||| ||||
Sbjct 1426 AACGCGAAGCTCGGTGATTTTGGACTTGCGAAGCTATGTGACCACGGGATTGATTCTCAA 1485
Query 1504 ACCTCTCATGTGGCAGGTACACTTGGG-TATATTTCACCTGAGCTCTCAAGAACAGGAAA 1562
|||||| |||| ||||||||| || || ||||| ||||| ||||||||||||||||| ||
Sbjct 1486 ACCTCTAATGTCGCAGGTACA-TTCGGATATATATCACCAGAGCTCTCAAGAACAGGGAA 1544
Query 1563 GGCAAGTACAAGATCAGATGTATTTGCGTTTGGAATAGTG-ATGCTAGAGATTGCTTGCG 1621
| |||| ||||| || ||||| ||||| |||||| | || ||| | |||||| ||||||
Sbjct 1545 GTCAAGCACAAGTTCTGATGTTTTTGCATTTGGAGT-GTTCATGTTGGAGATTACTTGCG 1603
Query 1622 GGCGAAAACCCATATT-GCCACGAGCATCACAAAGAGAGATGGTACTGACTGATTGGGTG 1680
| ||| |||||| | ||| |||| ||||| || |||||||| |||||||||||||
Sbjct 1604 GAAGAAGACCCAT-TGAGCCGCGAGGATCACCGAGCGAGATGGTTTTGACTGATTGGGTA 1662
Query 1681 CTAGAGTGTTGGGAGAA-TGAAGATATCAT-GCAGGTTCTTGATCATAAGATT-GGTCAG 1737
||||| ||||||| | | || |||||| || |||||| ||||| | || | | || ||
Sbjct 1663 CTAGACTGTTGGG-GCAGTGGAGATAT-ATTGCAGGTAGTTGATGAGAA-ACTAGGGCAC 1719
Query 1738 GAA-TATGTTGAGGAGCAAGCGGCACTT-G-TTCTGAAACTTGGCTTA-TTCTGTTCTCA 1793
| ||| ||| ||| |||| |||| | || ||||||| || || || || || ||
Sbjct 1720 -ATGTATCTTGCGGAACAAGTA--ACTTTGGTTTTGAAACTGGGTTTGCTT-TGCTCGCA 1775
Query 1794 TCCAGTAGCAGCCA-TCAGACCAAACATGTCTAGCGTCATTCAATTATTGGACAGTGTGG 1852
|||||| ||||||| | ||||||| |||||| ||||| || ||||| || ||| |||| |
Sbjct 1776 TCCAGTGGCAGCCACT-AGACCAAGCATGTCAAGCGTAATCCAATTCTTAGACGGTGTAG 1834
Query 1853 CTCA-GCTTCCTCATAACTTACTTGACATTG 1882
| || ||||||||||||||| || ||| |||
Sbjct 1835 C-CACGCTTCCTCATAACTTGCTAGACCTTG 1864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75228233875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5