BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70120.1 Length=582 Score E Sequences producing significant alignments: (Bits) Value Ahg316004 jgi|Araly1|316004|fgenesh1_pm.C_scaffold_2001037 523 5e-148 Ahg926320 jgi|Araly1|926320|scaffold_201881.1 305 2e-82 Ahg926322 jgi|Araly1|926322|scaffold_201883.1 196 1e-49 > Ahg316004 jgi|Araly1|316004|fgenesh1_pm.C_scaffold_2001037 Length=540 Score = 523 bits (283), Expect = 5e-148 Identities = 420/482 (87%), Gaps = 26/482 (5%) Strand=Plus/Plus Query 100 CTAGCGAACCAAGAAACTCCTGTCGCGCCGAATATAGAAATAGCTTCTATGGATTTCACT 159 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 52 CTAGCGAACCAAGAAACTCCTGT---GCCAAATATAGAAATAGCTTCTATGGATTTCACT 108 Query 160 GTGCGTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTCCCC 219 || | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 109 GTACTTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATTAGGGTTCCC 168 Query 220 AGTAACCTTCCTAATGCCTAT-ATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTTTA 278 ||| |||||||||||| || | |||||||| ||||||||||||||||||||| ||||||| Sbjct 169 AGTGACCTTCCTAATGTCT-TCATATGTCTTCAAGGAGACATTCAAGCTTCAGTGTTTTA 227 Query 279 CAAGA-CTATTAATCTTGTTACCTCATCTGCACAAAGGTATATCGATCTCAAATC-TGGC 336 ||| | | |||||||||||||| || || | ||||||||| | |||||||||||| || | Sbjct 228 CAAAAAC-ATTAATCTTGTTACTTCGTCCGGACAAAGGTACAACGATCTCAAATCCTG-C 285 Query 337 ACAGCTCAACAAATTAGGGTTTCAG-T---A-----GAAGAAGATATTGACGGTTTGATT 387 | |||||||| |||||||||||| | | ||||||||||| | ||||||||| Sbjct 286 TCTCCTCAACAACTTAGGGTTTCAGCTTCTATATCTGAAGAAGATATCGGTGGTTTGATT 345 Query 388 AGG-AAAAGGATTATCAAAGATATCAAAGAAAAGAGAGAAGTGAAGTTCGGATCGCAGTT 446 || |||| ||||||||||| ||||| || ||||||||||||||||||||||||||||| Sbjct 346 -GGTAAAAACATTATCAAAGACATCAACGAGAAGAGAGAAGTGAAGTTCGGATCGCAGTT 404 Query 447 GTTTCTAACGGATTGTAGAAAAGGGACCACAGGAGTTATGAGCTATGCGTGCGAT-ATAA 505 |||||| |||||||||||||||||||| ||||||||| ||||||||| ||| ||| | || Sbjct 405 GTTTCTTACGGATTGTAGAAAAGGGACAACAGGAGTTTTGAGCTATGTGTGTGATGA-AA 463 Query 506 CCA-TGTTGCGGTTCGAGCCAGGTTCTGAGACCAAGGCGTCTAAATTTGGAGA-CAACCC 563 ||| | ||||||||||||||||||||||||||||||||| |||| || || || |||||| Sbjct 464 CCACT-TTGCGGTTCGAGCCAGGTTCTGAGACCAAGGCGACTAAGTTCGG-GAACAACCC 521 Query 564 TA 565 || Sbjct 522 TA 523 > Ahg926320 jgi|Araly1|926320|scaffold_201881.1 Length=382 Score = 305 bits (165), Expect = 2e-82 Identities = 206/225 (92%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 97 TTGCTAGCGAACCAAGAAACTCCTGTCGCGCCGAATATAGAAATAGCTTCTATGGATTTC 156 |||||| |||||||||||||| |||| ||||||||| |||||| |||||||||||||| Sbjct 109 TTGCTA-CGAACCAAGAAACTTCTGT---GCCGAATATTGAAATAACTTCTATGGATTTC 164 Query 157 ACTGTGCGTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTC 216 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 ACGGTGCATAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTC 224 Query 217 CCCAGTAACCTTCCTAATGCCTATATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTT 276 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 CCCAGTGACCTTCCTAATGCCTATATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTT 284 Query 277 TACAAGACTATTAATCTTGTTACCTCATCTGCACAAAGGT-ATAT 320 ||||| | | ||| ||||||||| || || | |||||||| |||| Sbjct 285 TACAAAAATTTTACTCTTGTTACTTCGTCCGGACAAAGGTTATAT 329 > Ahg926322 jgi|Araly1|926322|scaffold_201883.1 Length=349 Score = 196 bits (106), Expect = 1e-49 Identities = 188/226 (83%), Gaps = 11/226 (5%) Strand=Plus/Plus Query 363 AGAAGAAGATAT-T-GACGGTTTGATTAG-GAAAAGGATTATCAAAGATATCAAAGAAAA 419 |||| ||||||| | | ||||| | | | ||||| ||||| || ||||||||||| || Sbjct 109 AGAA-AAGATATATCGGTGGTTTAACTGGCGAAAA-CATTATTAAGGATATCAAAGAGAA 166 Query 420 GA-GAGAAGTGAAGTTCGGATCGCAGTTGTTTCTAACGGATTGTAGAAAAGGGACCACAG 478 || || |||||||||||||||||||||||||||| ||||||||||||||| |||| |||| Sbjct 167 GAGGA-AAGTGAAGTTCGGATCGCAGTTGTTTCTTACGGATTGTAGAAAATGGACGACAG 225 Query 479 GAGTTATGAGCTATGCGTGCGAT-ATAACCATGTTGCGGTTCGAGCCAGGTTCTG-AGAC 536 ||||| ||||||||| || || | ||||| ||||||||||||||||| || || |||| Sbjct 226 GAGTTTTGAGCTATGTATGTGACGA-AACCACGTTGCGGTTCGAGCCAGATT-TGGAGAC 283 Query 537 CAAGGCGTCTAAATTTGGAGACAACCCTAGCTGTTTTAATTTTTGA 582 ||||||| |||| |||||| ||||||||| ||| |||| ||||| Sbjct 284 CAAGGCGACTAAGTTTGGAAACAACCCTACCTGCACTAATATTTGA 329 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21290818662 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5