BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70120.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316004 jgi|Araly1|316004|fgenesh1_pm.C_scaffold_2001037 523 5e-148
Ahg926320 jgi|Araly1|926320|scaffold_201881.1 305 2e-82
Ahg926322 jgi|Araly1|926322|scaffold_201883.1 196 1e-49
> Ahg316004 jgi|Araly1|316004|fgenesh1_pm.C_scaffold_2001037
Length=540
Score = 523 bits (283), Expect = 5e-148
Identities = 420/482 (87%), Gaps = 26/482 (5%)
Strand=Plus/Plus
Query 100 CTAGCGAACCAAGAAACTCCTGTCGCGCCGAATATAGAAATAGCTTCTATGGATTTCACT 159
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 52 CTAGCGAACCAAGAAACTCCTGT---GCCAAATATAGAAATAGCTTCTATGGATTTCACT 108
Query 160 GTGCGTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTCCCC 219
|| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 109 GTACTTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATTAGGGTTCCC 168
Query 220 AGTAACCTTCCTAATGCCTAT-ATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTTTA 278
||| |||||||||||| || | |||||||| ||||||||||||||||||||| |||||||
Sbjct 169 AGTGACCTTCCTAATGTCT-TCATATGTCTTCAAGGAGACATTCAAGCTTCAGTGTTTTA 227
Query 279 CAAGA-CTATTAATCTTGTTACCTCATCTGCACAAAGGTATATCGATCTCAAATC-TGGC 336
||| | | |||||||||||||| || || | ||||||||| | |||||||||||| || |
Sbjct 228 CAAAAAC-ATTAATCTTGTTACTTCGTCCGGACAAAGGTACAACGATCTCAAATCCTG-C 285
Query 337 ACAGCTCAACAAATTAGGGTTTCAG-T---A-----GAAGAAGATATTGACGGTTTGATT 387
| |||||||| |||||||||||| | | ||||||||||| | |||||||||
Sbjct 286 TCTCCTCAACAACTTAGGGTTTCAGCTTCTATATCTGAAGAAGATATCGGTGGTTTGATT 345
Query 388 AGG-AAAAGGATTATCAAAGATATCAAAGAAAAGAGAGAAGTGAAGTTCGGATCGCAGTT 446
|| |||| ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 346 -GGTAAAAACATTATCAAAGACATCAACGAGAAGAGAGAAGTGAAGTTCGGATCGCAGTT 404
Query 447 GTTTCTAACGGATTGTAGAAAAGGGACCACAGGAGTTATGAGCTATGCGTGCGAT-ATAA 505
|||||| |||||||||||||||||||| ||||||||| ||||||||| ||| ||| | ||
Sbjct 405 GTTTCTTACGGATTGTAGAAAAGGGACAACAGGAGTTTTGAGCTATGTGTGTGATGA-AA 463
Query 506 CCA-TGTTGCGGTTCGAGCCAGGTTCTGAGACCAAGGCGTCTAAATTTGGAGA-CAACCC 563
||| | ||||||||||||||||||||||||||||||||| |||| || || || ||||||
Sbjct 464 CCACT-TTGCGGTTCGAGCCAGGTTCTGAGACCAAGGCGACTAAGTTCGG-GAACAACCC 521
Query 564 TA 565
||
Sbjct 522 TA 523
> Ahg926320 jgi|Araly1|926320|scaffold_201881.1
Length=382
Score = 305 bits (165), Expect = 2e-82
Identities = 206/225 (92%), Gaps = 5/225 (2%)
Strand=Plus/Plus
Query 97 TTGCTAGCGAACCAAGAAACTCCTGTCGCGCCGAATATAGAAATAGCTTCTATGGATTTC 156
|||||| |||||||||||||| |||| ||||||||| |||||| ||||||||||||||
Sbjct 109 TTGCTA-CGAACCAAGAAACTTCTGT---GCCGAATATTGAAATAACTTCTATGGATTTC 164
Query 157 ACTGTGCGTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTC 216
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 ACGGTGCATAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTC 224
Query 217 CCCAGTAACCTTCCTAATGCCTATATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTT 276
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CCCAGTGACCTTCCTAATGCCTATATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTT 284
Query 277 TACAAGACTATTAATCTTGTTACCTCATCTGCACAAAGGT-ATAT 320
||||| | | ||| ||||||||| || || | |||||||| ||||
Sbjct 285 TACAAAAATTTTACTCTTGTTACTTCGTCCGGACAAAGGTTATAT 329
> Ahg926322 jgi|Araly1|926322|scaffold_201883.1
Length=349
Score = 196 bits (106), Expect = 1e-49
Identities = 188/226 (83%), Gaps = 11/226 (5%)
Strand=Plus/Plus
Query 363 AGAAGAAGATAT-T-GACGGTTTGATTAG-GAAAAGGATTATCAAAGATATCAAAGAAAA 419
|||| ||||||| | | ||||| | | | ||||| ||||| || ||||||||||| ||
Sbjct 109 AGAA-AAGATATATCGGTGGTTTAACTGGCGAAAA-CATTATTAAGGATATCAAAGAGAA 166
Query 420 GA-GAGAAGTGAAGTTCGGATCGCAGTTGTTTCTAACGGATTGTAGAAAAGGGACCACAG 478
|| || |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 167 GAGGA-AAGTGAAGTTCGGATCGCAGTTGTTTCTTACGGATTGTAGAAAATGGACGACAG 225
Query 479 GAGTTATGAGCTATGCGTGCGAT-ATAACCATGTTGCGGTTCGAGCCAGGTTCTG-AGAC 536
||||| ||||||||| || || | ||||| ||||||||||||||||| || || ||||
Sbjct 226 GAGTTTTGAGCTATGTATGTGACGA-AACCACGTTGCGGTTCGAGCCAGATT-TGGAGAC 283
Query 537 CAAGGCGTCTAAATTTGGAGACAACCCTAGCTGTTTTAATTTTTGA 582
||||||| |||| |||||| ||||||||| ||| |||| |||||
Sbjct 284 CAAGGCGACTAAGTTTGGAAACAACCCTACCTGCACTAATATTTGA 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5