BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70130.1
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316005 jgi|Araly1|316005|fgenesh1_pm.C_scaffold_2001038 2843 0.0
Ahg353897 jgi|Araly1|353897|fgenesh1_pg.C_scaffold_7001070 549 3e-155
Ahg316003 jgi|Araly1|316003|fgenesh1_pm.C_scaffold_2001036 396 4e-109
Ahg470821 jgi|Araly1|470821|fgenesh2_kg.1__775__AT1G07870.1 52.8 9e-06
> Ahg316005 jgi|Araly1|316005|fgenesh1_pm.C_scaffold_2001038
Length=1983
Score = 2843 bits (1539), Expect = 0.0
Identities = 1841/1987 (93%), Gaps = 20/1987 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTCT--A-AAGATGTTATTATT-TTCCTTATTCTTCTTCTATATGGCTTC 56
||||||||| |||| | ||| |||| ||||| || | | ||||||||||| ||||||||
Sbjct 1 ATGTCTCTGTTTCTGAAGAAGTTGTTGTTATTCTTTC-TCTTCTTCTTCTACATGGCTTC 59
Query 57 AATTTCTCAATGCTCAGACCCAACCGGTGGACAGTTTAGCTTCAACGGTTACTTGTACAC 116
|||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 AATTTCTCAAGGCTTAGATCCAACCGGTGGACAGTTTAGCTTCAACGGTTACTTGTATAC 119
Query 117 CGATGGAGTTGCGGATCTAAACCCGGACGGTTTGTTCAAACTCATAACTTCAAAGACACA 176
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CGATGGAGTTGCGGATCTAAACCCGGACGGTTTGTTCAAACTTATAACTTCAAAGACACA 179
Query 177 AGGAGGAGCTGGTCAAGTTCTTTACCAGTTCCCACTCCAGTTCAAGAACTCACCAAAC-G 235
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 180 AGGTGGAGCTGGCCAAGTTCTTTACCAGTTCCCACTCCAGTTCAAGAACTCACC-AACAG 238
Query 236 GCACTGTTTCATCCTTCTCCACCACTTTCGTCTTTGCTATCGTCGCAGTACGTAAAACAA 295
|| | ||||| ||||| ||||||||||| ||||| || ||||| ||||| ||||||| ||
Sbjct 239 GCGCAGTTTCGTCCTTTTCCACCACTTTTGTCTTCGCCATCGTTGCAGTCCGTAAAAAAA 298
Query 296 TCGCCGGTTGTGGACTTTCCTTCAACATCTCTCCTACAAAAGGCTTGAATTCAGTTCCAA 355
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 299 TCGCCGGTTGTGGACTTTCCTTCAACATCTCTCCTACAAAAGGCTTAAATTCTGTTCCAA 358
Query 356 ATATCGA------C-C--ACTCTAACCATTCTGTTTCGGTTGGATTTCATACCGCTAAAA 406
| ||||| | | |||||||| |||||||||||||| ||| |||||||||||||
Sbjct 359 ACATCGACCCCTCCTCTTCCTCTAACCGTTCTGTTTCGGTTGAATTCCATACCGCTAAAA 418
Query 407 GCGATAAACCGGATGGTGAAGATGTCAACCTCGTTGGTATCAATATCGATAGCTCGAAAA 466
|||| ||| |||||||||||||||| ||| |||||||||||||| ||||||| || |||
Sbjct 419 GCGAGAAAACGGATGGTGAAGATGTAAACGTCGTTGGTATCAATGTCGATAGGACGGAAA 478
Query 467 TGGATAGAAATTGTTCGGCTGGTTACTACAAAGATGATGGTAGATTGGTGAATCTAGATA 526
|| ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 479 CGGGTAGAAATTGTTCGGCTGGTTATTACAAAGATGATGGTAGATTTGTAAATCTAGATA 538
Query 527 TTGCAAGTGGGAAGCCTATACAGGTTTGGATTGAGTATAACAACTCAACTAAACAGCTTG 586
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 539 TTGCAAGTGGGAAGCCAATACAGGTATGGATTGAGTATAACAACTCAACTAAAAAGCTTG 598
Query 587 ATGTTACAATGCATTCTATTAAGATATCTAAACCTAAGATTCCTCTGCTTTCGATGCGGA 646
|||||||||||||||||||| |||| ||||| ||||||||||||||| ||||| ||||||
Sbjct 599 ATGTTACAATGCATTCTATTCAGATTTCTAAGCCTAAGATTCCTCTGTTTTCGTTGCGGA 658
Query 647 AAGATCTTTCTCCATATCTACATGAGTATATGTACATTGGCTTTACTTCAGTGGGAAGTC 706
||||||||||| | ||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 659 AAGATCTTTCTTCGTATCTACGTGAGTATATGTACATTGGCTTCACTTCAGTAGGAAGTC 718
Query 707 CAACTTCTTCTCACTACATTCTTGGCTGGAGTTTCAACAACAAAGGAGCAGTTTCCGATA 766
|||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||
Sbjct 719 CAACTTCTTCTCACTACATTCTTGGCTGGAATTTCAACAACACTGGAACAGTTTCAGATA 778
Query 767 TAAATCTCTCTCGTCTTCCTAAAGTCCCCGATGAAGATCAAGAACG-GTCGTTGAGTTCT 825
|||||||||||||||| |||||||| ||||||||||||||||| || | ||||||||||
Sbjct 779 TAAATCTCTCTCGTCTCCCTAAAGTACCCGATGAAGATCAAGATCGAG-CGTTGAGTTCC 837
Query 826 AAGATCTTGGCGATTAGTTTAAGTATTTCAGGAGTTACACTAGTTATCGTCTTGATTCTT 885
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 838 AAGATCTTGGCGATTAGTTTAAGTATTTCAGGAGTTACACTTGTTATCGTCTTGGTTCTT 897
Query 886 GGAGTTATGTTGTTCTTGAAGAGGAAGAAGTTCTTGGAAGTTATTGAGGACTGGGAGGTG 945
||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 GGATTTATGTTCTTCTTGAAGAGGAAGAAGTTCTTGGAAGTGATTGAGGACTGGGAGGTA 957
Query 946 CAGTTTGGTCCTCATAAATTCACTTACAAAGATCTCTTCATCGCCACGAAAGGTTTCAAG 1005
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 CAGTTTGGTCCTCATAAATTCACTTACAAAGATCTCTTCATCGCCACTAAAGGTTTCAAG 1017
Query 1006 AACAGTGAGGTACTTGGGAA-AGGAGGTTTTGGAAAAGTTTTCAAGGGGATCTTACCGCT 1064
||||| ||| | ||| |||| |||||||||||||||||| |||||||| ||||||||| |
Sbjct 1018 AACAGCGAGCTTCTT-GGAAGAGGAGGTTTTGGAAAAGTCTTCAAGGGAATCTTACCGTT 1076
Query 1065 GTCTAGTATACCGATCGCGGTGAAGAAGATTTCTCATGATTCAAGACAAGGAATGAGAGA 1124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTCTAGTATACCGATCGCGGTAAAGAAGATTTCTCATGATTCAAGACAAGGAATGAGAGA 1136
Query 1125 GTTTTTAGCTGAGATTGCTACCATTGGTAGACTTAGACATCCAGATTTAGTTCGTCTTCT 1184
|||| | |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GTTTGTGGCTGAGATCGCGACCATTGGTAGACTTAGACATCCAGATTTAGTTCGTCTTCT 1196
Query 1185 TGGGTACTGTAGACGTAAAGGAGAACTCTACTTGGTGTATGACTTTATGCCCAAAGGAAG 1244
|||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1197 CGGGTACTGCAGACGCAAAGGAGAACTCTACTTGGTCTATGACTTCATGCCCAAAGGAAG 1256
Query 1245 CCTTGATAAGTTTCTTTATAATCAACCAAATCAAATTCTTGATTGGTCACAGAGATTCAA 1304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TCTTGATAAGTTTCTTTATAATCAACCAAATCAAATTCTTGATTGGTCACAGAGATTCAA 1316
Query 1305 TATCATCAAAGACGTAGCCTCGGGACTCTGCTACTTGCATCAGCAGTGGGTTCAAGTGAT 1364
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 GATCATCAAAGACGTTGCCTCGGGACTCTGCTACTTGCATCAGCAGTGGGTTCAGGTGAT 1376
Query 1365 TATTCACAGGGATATTAAGCCAGCAAATATTCTTCTTGATGAAAACATGAACGCGAAGCT 1424
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1377 TATCCACAGGGATATAAAGCCAGCAAATATTCTTCTTGATGAAAATATGAACGCGAAGCT 1436
Query 1425 CGGTGATTTTGGACTTGCGAAGCTATGTGACCACGGGATTGACTCTCAAACCTCGAATGT 1484
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1437 CGGTGATTTTGGACTTGCGAAGCTATGTGACCACGGGATTGATTCTCAAACCTCTAATGT 1496
Query 1485 TGCAGGTACATTTGGATATATATCACCGGAGCTGTCGAGAACAGGGAAGTCAAGCACAAG 1544
||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1497 CGCAGGTACATTCGGATATATATCACCAGAGCTCTCAAGAACAGGGAAGTCAAGCACAAG 1556
Query 1545 TTCTGATGTTTTTGCATTTGGAGTGTTCATGTTGGAGATTACTTGCGGAAGAAGACCCAT 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TTCTGATGTTTTTGCATTTGGAGTGTTCATGTTGGAGATTACTTGCGGAAGAAGACCCAT 1616
Query 1605 TGGGCCAAGAGGATCACCAAGCGAGATGGTTTTGACTGATTGGGTACTAGACTGTTGGGA 1664
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TGAGCCGCGAGGATCACCGAGCGAGATGGTTTTGACTGATTGGGTACTAGACTGTTGGGG 1676
Query 1665 CAGTGGAGACATACTGCAGGTAGTTGATGAGAAACTAGGGCACAGGTATCTTGCGGAACA 1724
||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1677 CAGTGGAGATATATTGCAGGTAGTTGATGAGAAACTAGGGCACATGTATCTTGCGGAACA 1736
Query 1725 AGTAACTTTGGTTTTGAAACTGGGATTGCTTTGCTCGCATCCAGTGGCAGCCACTAGACC 1784
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1737 AGTAACTTTGGTTTTGAAACTGGGTTTGCTTTGCTCGCATCCAGTGGCAGCCACTAGACC 1796
Query 1785 AAGCATGTCAAGCGTGATCCAATTTTTAGACGGTGTAGCCACTCTTCCTCATAACTTGCT 1844
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1797 AAGCATGTCAAGCGTAATCCAATTCTTAGACGGTGTAGCCACGCTTCCTCATAACTTGCT 1856
Query 1845 AGACCTTGTGAATTCTCGGATAATCAATGAAGGATTTGATACCTTAGGTGTAACGACTGA 1904
|||||||| |||| ||||||||||| ||| |||||| ||| | ||||||| ||| |||||
Sbjct 1857 AGACCTTGCGAATGCTCGGATAATCGATGGAGGATTCGATGCATTAGGTGAAACAACTGA 1916
Query 1905 GTCTATGGAAGCGAGTAGTAACGTTTCCTTGGTCATGACGGAATCGTTTCTCTCTAGTGG 1964
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1917 GTCTATGGAGGCGAGTAGTAACGTTTCCGTGGTCATGACGGAATCGTTTCTCTCTAGTGG 1976
Query 1965 ACGCTAA 1971
||| |||
Sbjct 1977 ACGTTAA 1983
> Ahg353897 jgi|Araly1|353897|fgenesh1_pg.C_scaffold_7001070
Length=1974
Score = 549 bits (297), Expect = 3e-155
Identities = 754/965 (78%), Gaps = 69/965 (7%)
Strand=Plus/Plus
Query 553 TGGATTGAGTATAACAACTCAACTAAACAGCTTGATGTTACAATGCATTCTATT-AAGAT 611
|||||||| ||| | ||||| ||||||||| |||| ||||| ||| ||||| | | |
Sbjct 583 TGGATTGAATATGATTCCTCAAGAAAACAGCTTAATGTCACAATTCATCCTATTCATG-T 641
Query 612 ATCTAAACCTAAGATTCCTCTGCTTTCGAT-GCGGAAAGATCTT-TCTCCATATCTAC-A 668
|| || || |||| ||| |||||||| | | |||||| || || |||||||| |
Sbjct 642 TTCCAAGCCAAAGACTCCACTGCTTTCTCTAAC-CAAAGAT-TTATCACCATATCT-CTT 698
Query 669 TGAGTATATGTACATTGGCTTTACTTCAGTGGGA-A-G-TC-CAAC-TTCTTCTCACTAC 723
|||| ||||||| |||| || || ||| | | | | || | ||| || |||||
Sbjct 699 TGAGCGTATGTACGTTGGGTTCACGTCA-T-CCACAGGCTCTGTTCTTTCATCCCACTAT 756
Query 724 ATTCTTGGCTGGA-GTTTCAA-CAACAA-AGGAGCAGTTTCCGATATAAATCTCTCTCGT 780
|||||||| |||| |||| || | ||| ||| ||| ||| || || || | ||||||
Sbjct 757 ATTCTTGGTTGGACGTTT-AAGC-TCAATGGGA-CAGCTTCAAATCTAGATATTTCTCGT 813
Query 781 CTTCCTAAAGTCCCCGATGAAGATCAAGAACG-GTCGT-TGAGT--TCT----AAGATCT 832
||||| ||| | || ||||| || || || | || | |||| ||| |||||||
Sbjct 814 CTTCCAAAACTTCCTGATGACTAT-AAAAAAGACTC-TCCGAGTAGTCTGAGAAAGATCT 871
Query 833 TGGCGATTAGTTTAAGTATT-TCAGGAGTTACACTAGT--T-ATCGTCTTGATTC-TTGG 887
|||| || ||||| ||| || | || | |||| || | || |||||| || | |
Sbjct 872 TGGCTATCAGTTTGAGT-TTAACTGG-CCT-CACT-GTCCTCGTCTTCTTGA-TCATAAG 926
Query 888 AGTTATG-TTGTTCTTGAAGAGGAAGAAGTTCTTGGAAGTTATTGAGGACTGGGAGGTGC 946
|| ||| || |||||||| ||||||||||| |||||||| |||| |||||||||||||
Sbjct 927 CGTCATGCTT-TTCTTGAAAAGGAAGAAGTTAATGGAAGTTCTTGAAGACTGGGAGGTGC 985
Query 947 AGTTTGGTCCTCATAAATTCACTTACAAAGATCTCTTCATCGCCACGAAA-GGTTTCAAG 1005
|||||||||| ||||| || ||||||| ||||||| ||| ||||| ||| |||||||||
Sbjct 986 AGTTTGGTCCACATAAGTTTTCTTACAAGGATCTCTACATTGCCAC-AAAGGGTTTCAAG 1044
Query 1006 AACAGTGAGGTACTTGGGAAAGGAGGTTTTGGAAAAGTTTTCAAGGGGATC-TTACCG-C 1063
||||||||| | ||||| |||||||| ||||||||||||| ||| || | | ||| | |
Sbjct 1045 AACAGTGAGCTTCTTGGTAAAGGAGGGTTTGGAAAAGTTTACAAAGGTA-CATTATTGAC 1103
Query 1064 TGTCTAGTAT--ACCGATCGCGGTGAAG-AAGATTTCTCATGATTCAAGACAAGGAATGA 1120
||||| || | | |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1104 -GTCTAACATGGA-C-ATCGCGGTGAAGAAAG-TTTCTCATGATTCAAGACAAGGAATGA 1159
Query 1121 GAGAGTTTTTAGCTGAGATTGCTACCATTGGTA-GACTTAGACATCCAGAT-TTAGTTCG 1178
|||||||| | || ||||| || |||||||| | | || ||||||| | | |||||| |
Sbjct 1160 GAGAGTTTGTGGCCGAGATCGCGACCATTGG-ACGTCTCAGACATC-ATAACTTAGTTAG 1217
Query 1179 TCTTCTTGGGTACTGTAGACGTAAAGGAGAACTCTACTTGGTGTATGACTT-TATGCCCA 1237
|||||||| ||||| ||||| ||||| |||||||| ||||| || || || |||||| |
Sbjct 1218 GCTTCTTGGCTACTGCAGACGCAAAGGCGAACTCTATTTGGTCTACGA-TTGTATGCCAA 1276
Query 1238 AAGGAAGCCTTGATAAGTTTCTTTATAATCAACCA-AATCAAATTCTTGATTGGTCACAG 1296
|||| || ||||||||||||||||| |||||||| || || | |||||||||||||||
Sbjct 1277 AAGGCAGTCTTGATAAGTTTCTTTACCATCAACCAGAA-CAGAGTCTTGATTGGTCACAA 1335
Query 1297 AGATTCAATATCATCAAAGACGTAGCCTCGGGACTCTGCTACTTGCATCAGCAGTGGGTT 1356
|||||||| ||||||||||| || || || || |||||||| || || || |||||||||
Sbjct 1336 AGATTCAACATCATCAAAGATGTTGCTTCTGGTCTCTGCTATTTACACCACCAGTGGGTT 1395
Query 1357 CAAGTGATTATTCACAGGGATATTAAGCCAGCAAATATTCTTCTTGATGAAAAC-ATGAA 1415
||||| || ||||||||||| |||||||||||||| ||||| |||||||| | |||||
Sbjct 1396 CAAGTCATCATTCACAGGGACATTAAGCCAGCAAACATTCTCCTTGATGATT-CTATGAA 1454
Query 1416 CGCGAAG-CTCGGTGATTTTGGACTTGCGAAGCTATGTGACCACGGGATTGACTC-TCAA 1473
|| |||| |||||||||||||| || |||||||| ||||| |||||| |||| || ||||
Sbjct 1455 CG-GAAGGCTCGGTGATTTTGGTCTCGCGAAGCTTTGTGATCACGGGTTTGA-TCCTCAA 1512
Query 1474 ACCTC 1478
|||||
Sbjct 1513 ACCTC 1517
> Ahg316003 jgi|Araly1|316003|fgenesh1_pm.C_scaffold_2001036
Length=1902
Score = 396 bits (214), Expect = 4e-109
Identities = 793/1059 (75%), Gaps = 93/1059 (9%)
Strand=Plus/Plus
Query 480 TTCGGCTGGTTACTACAAAGATGATGGTAGATTGGTGA-ATCTAGAT-ATTGCAAGTGGG 537
||| || ||||| ||||| |||||||||||||| | | |||| | |||| ||| ||
Sbjct 468 TTCAGCAGGTTATTACAAGGATGATGGTAGATTTAT-AGATCT-CTTGCTTGCCAGT-GG 524
Query 538 A-AGCCTATACAGGTTTGGATTGAGTATAACAACTCAACTA-A-ACAGCTTGATGTTACA 594
| | ||||| || || |||||||| ||| | | | ||| | | ||||||| | || |||
Sbjct 525 AGACCCTATGCAAGTGTGGATTGAATATGATAGC-AAAC-AGAGACAGCTTAACGTCACA 582
Query 595 ATGCATTCTATTAAGATAT--CTAAACCTAAGATTCCTCTGCTTTCGATGCGGAAA-GAT 651
| ||| ||||| | | | |||| || |||||||| || ||||| | | ||| |||
Sbjct 583 CTTCATCCTATT-CG-TGTCCCTAAGCCAAAGATTCCACTCCTTTCTCTTC-AAAAGGAT 639
Query 652 CTTTCTCCATATCTACATGAGTATATGTACATTGG-CTTTACT--T-CAGTGGG-A-AGT 705
|||||||| ||| | | ||||| ||||||| |||| ||| || | || ||| | | |
Sbjct 640 CTTTCTCCCTATTTGCTTGAGTTTATGTACCTTGGATTTTCCTCATCCA-CGGGTACA-T 697
Query 706 CCAACTTCTTCTCACTACATTCTT-GGCTGGA-GTTTCAACAACAA-AGGAGCAGTTTCC 762
|||| | |||||||| | | || || |||| | ||||| | || ||| | | |||
Sbjct 698 -TAACTGCATCTCACTATA-TATTGGGTTGGACG-TTCAAGATTAATGGGA-C-GGCTCC 752
Query 763 -GATATAAATCTCTCTCGTCTTCCTAAA-G-TCCCCGATGAAGATCAAG-AACGG-T-CG 816
| |||| | | |||||| ||||| ||| | |||||| | | ||| || | || | ||
Sbjct 753 AGCTATAGACCCCTCTCGACTTCC-AAACGTTCCCCGTTTTA-ATC-AGCCATGGATCCG 809
Query 817 TTGAGTTCT-AA---GATCTTGGCGATTAGTTTAAGTATTTCAGGAGT-TACACTAGTTA 871
||| ||| || | | || |||| ||||| | ||| ||||| || || || | |
Sbjct 810 --GAG-TCTGAAGGGGGTTTTAACGATCAGTTTGACTATATCAGGCGTCGCCA-TACTCA 865
Query 872 TCGTCTTGATTCTTGGAG-TTAT-G-TTGTTCTTGAAGAGGAAGAAG-TTCTTGGAAGTT 927
|| ||||| || | || ||| | || ||| |||||||||||||| | | ||||||||
Sbjct 866 TCATCTTGGGTC-T-CAGCATATGGTTTTTTC-TGAAGAGGAAGAAGCTAC-TGGAAGTT 921
Query 928 ATTGAGGACTGGGAGGTGCAGTTTGGTCCTCATAAATTCACTTACAAAGATCT-CTTCA- 985
||||||||||||||||||||||||||||||||| || ||| ||||||||| | ||
Sbjct 922 CTTGAGGACTGGGAGGTGCAGTTTGGTCCTCATAGGTTTGCTTTCAAAGATCTACA-CAC 980
Query 986 TCGCCACGAAAGG-TTTCAAGAACAGTGAGGTACTTGGGAAAGGAGGTTTTGGAAAAGTT 1044
| || || ||||| ||||||||| | ||| | || || ||||||| ||||| |||||
Sbjct 981 T-GCAAC-AAAGGGTTTCAAGAATACAGAGCTTCTCGGTCAAGGAGGATTTGGGAAAGTC 1038
Query 1045 T-TCAAGGGGATCTT-ACC-GCTGTCTA--GTATACCGATCGCGGTGAAGA-AGATTTCT 1098
| | ||||| | ||| ||| | |||| | ||| | |||||| ||||||| || |||||
Sbjct 1039 TAT-AAGGGTA-CTTTACCAG-TGTCCAACGTAGA--GATCGCTGTGAAGAGAG-TTTCT 1092
Query 1099 CATGATTCAAGACAAGGAATGAGAGAGTTT-TTAGCTGAGATTGCTACCATTGGTAG-AC 1156
||||||||||| || || ||||||| ||| || |||||||| || |||||||| | |
Sbjct 1093 CATGATTCAAGGCAGGGCATGAGAGGGTTCATT-GCTGAGATCGCAACCATTGGGCGTA- 1150
Query 1157 TTAGACATCC-AGATTTAGTTCGTCTTCTTGGGTACTGTAGACGTAAAGGAGAACTCTAC 1215
| |||||||| | | |||||||| || | || ||||| |||| ||||| |||||||||
Sbjct 1151 TCAGACATCCCA-ACTTAGTTCGGCTCCAAGGTTACTGCAGACACAAAGGTGAACTCTAC 1209
Query 1216 TTGGTGTATGACTT-TATGCCCAAAGGAAGCCTTGATAAGTTTCTTTATAATCAACCAAA 1274
||||| ||||| || |||||||||||| |||||||||||||| ||||| | |||| | |
Sbjct 1210 TTGGTATATGA-TTGTATGCCCAAAGGCAGCCTTGATAAGTTCCTTTACGACCAAC-AGA 1267
Query 1275 -TCA-AATTCTTGATTGGTCACAGAGATTCAATATCATCAAAGACGTAGCCTC-GGGACT 1331
| ||| |||||||||||||||||||| || ||||||||||||||||| || ||| ||
Sbjct 1268 CTGGTAAT-CTTGATTGGTCACAGAGATTTAAGATCATCAAAGACGTAGCTTCTGGG-CT 1325
Query 1332 CTGCTACTTGCATCAGCAGTGGGTTCAAGTGATTATTCACAGGGATATTAAGCCAGCAAA 1391
|| | ||||| || || ||||| || |||||||| |||||||||||||| ||||| ||
Sbjct 1326 TTGTTTTTTGCACCAACAATGGGTGCAGGTGATTATCCACAGGGATATTAAACCAGCCAA 1385
Query 1392 TATTCTTCTTGATGAAAACATGAACGCGAAGCTCGGTGATTTTGGACTTGCGAAGCTATG 1451
|| |||||| | | || ||||| || || || ||||||||||| || |||||||| ||
Sbjct 1386 CATCCTTCTTAACGCTAATATGAATGCTAAACTTGGTGATTTTGGTCTCGCGAAGCTCTG 1445
Query 1452 TGACCACGGGATTGACTC-TCAAACCTCGAATGTTGCAG 1489
|| || |||||||| || ||| ||||| |||| ||||
Sbjct 1446 -GATCATGGGATTGA-TCCTCAGACCTCTCATGTGGCAG 1482
> Ahg470821 jgi|Araly1|470821|fgenesh2_kg.1__775__AT1G07870.1
Length=1690
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1025 AAGGAGGTTTTGGAAAAGTTTTCAAGGG 1052
||||||||||||||||||||||||||||
Sbjct 519 AAGGAGGTTTTGGAAAAGTTTTCAAGGG 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74085526525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5