BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70140.1
Length=2465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476139 jgi|Araly1|476139|fgenesh2_kg.2__1269__AT1G70140.1 2747 0.0
Ahg313260 jgi|Araly1|313260|fgenesh1_pm.C_scaffold_1002040 953 0.0
Ahg932838 jgi|Araly1|932838|scaffold_400826.1 219 1e-55
> Ahg476139 jgi|Araly1|476139|fgenesh2_kg.2__1269__AT1G70140.1
Length=2193
Score = 2747 bits (1487), Expect = 0.0
Identities = 1757/1883 (93%), Gaps = 36/1883 (2%)
Strand=Plus/Plus
Query 595 CTAGAGAAGGATTCACGAGGTTTGGTGGTGTGAAAGGTTTGATTCTTGATGAGAATGGTC 654
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CTAGAGAAGGTTTCACGCGGTTTGGTGGTGTGAAAGGTTTGATTCTTGATGAGAATGGTC 394
Query 655 TTGATGTGTTGTATTGGAGAAAGCTACAGAGTCAGAGAGAAAGAAGTGGGAGTTTCAGGA 714
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 395 TTGATGTGTTGTATTGGAGAAAGCTACAGAGTCAGAGAGAAAGAAGTGGAAGTTTCAAGA 454
Query 715 AACAGATCGTCACCGGagaagaagaagacgagaaagaagttatttattacaagaacaaga 774
|||||||| |||||||||||||||| ||| ||||| || |||||||||||||||||||
Sbjct 455 AACAGATCATCACCGGAGAAGAAGATGAC---AAAGAGGTGATTTATTACAAGAACAAGA 511
Query 775 agaaaacagaGCCCGTTACAGAGATTCCTCTTCTTAGAGGAAGATCATCTACTTCTCACA 834
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 512 AGAAAACAGAACCTGTTACAGAGATTCCTCTTCTTAGAGGAAGATCATCTACTTCTCATA 571
Query 835 GTGTTATCCATAACGAAGATCATCAGCCG---CCACCG-C-A----GGTGAAACAGAGTG 885
|||| |||||||||||||||||||||||| |||||| | | ||||||||||||||
Sbjct 572 GTGTAATCCATAACGAAGATCATCAGCCGCCTCCACCGCCAATTCCGGTGAAACAGAGTG 631
Query 886 AACCAACACCACCACCGCCACCACCGTCAATTGCGGTGAAACAGAGTGCACCAACGCCAT 945
|||||||||||||||| || || ||||||||| |||||||||||||||| |||||||||
Sbjct 632 AACCAACACCACCACCACCTCCGCCGTCAATTCCGGTGAAACAGAGTGCCCCAACGCCAC 691
Query 946 CGCCACCTCCTCCGATTAAGAAGGGTTCTTCACCATCGCCACCGCCACCTCCACCGGTGA 1005
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 692 CGCCACCTCCTCCGATGAAGAAGGGTTCTTCACCATCGCCACCTCCACCTCCGCCGGTGA 751
Query 1006 AAAAGGTTGGAGCTTTATCATCATCAGCTTCGAAACCACCACCTGCGCCGGTTAGAGGAG 1065
||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 752 AAAAGGTCGGAGCTTTATCATCATCAGCTTCGAAACCACCTCCTGCGCCGGTT-----A- 805
Query 1066 CAAGTGGAGGAGAGACTTCGAAACAAGTAAAGTTGAAGCCTTTACATTGGGATAAAGTAA 1125
|| ||| ||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 806 -AA--GGA-GAGAG--TTCGAAACAAGTAAAGCTAAAGCCTTTACATTGGGATAAAGTAA 859
Query 1126 ACCCTGATTCCGATCATTCAATGGTTTGGGACAAAATCGATCGTGGATCATTCAGTTTCG 1185
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ACCCTGATTCTGATCATTCAATGGTTTGGGACAAAATCGATCGTGGATCATTCAGTTTCG 919
Query 1186 ATGGCGATTTAATGGAAGCTCTGTTTGGATACGTTGCCGTGGGGAAGAAATCACCAGAAC 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 ATGGCGATTTAATGGAAGCTCTGTTTGGATACGTTGCCGTGGGGAAGAAATCACCAGAAC 979
Query 1246 AAGGCGATGAGAAAAACCCTAAATCAACGCAAATATTCATACTTGATCCGAGAAAGTCTC 1305
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 980 ACGGCGATGATAAAAACCCTAAATCAACGCAAATCTTCATACTTGATCCGAGAAAGTCTC 1039
Query 1306 AAAACACAGCGATTGTGCTCAAATCATTAGGTATGACACGTGAAGAGCTTGTTGAATCAC 1365
||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||
Sbjct 1040 AAAACACAGCGATTGTGCTTAAATCGTTAGGTATGACACGAGAAGAGCTTGTTGAAGCAC 1099
Query 1366 TCATAGAAGGAAACGATTTCGTGCCAGACACTCTTGAGAGGTTAGCTAGAATAGCTCCAA 1425
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1100 TCGTAGAAGGAAACGATTTCGTGCCAGACACGCTTGAGAGGTTAGCTAGAATAGCCCCGA 1159
Query 1426 CGAAAGAAGAACAATCAGCCATTCTTGAATTCGACGGTGACACGGCAAAGCTTGCTGATG 1485
| ||||||||||||||||| |||||||||||||| || ||||||||||| || |||||||
Sbjct 1160 CTAAAGAAGAACAATCAGCGATTCTTGAATTCGAAGGCGACACGGCAAAACTCGCTGATG 1219
Query 1486 CGGAGAC-GTTTCTGTTTCATCTTCTTAAATCCGTGCCAACCGCGTTTACGAGACTAAAC 1544
|||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CGGA-ATTGTTTTTGTTTCATCTTCTTAAATCCGTGCCAACCGCGTTTACGAGACTAAAC 1278
Query 1545 GCGTTTCTCTTTAGGGCTAATTATTATCCAGAGATGGCTCATCATAGCAAATGTTTACAA 1604
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 1279 GCGTTTCTCTTTAGGGCTAATTATTATCCAGAGATGTCTCATCATGGAAAATGTTTACAA 1338
Query 1605 ACGTTGGATTTAGCTTGTAAAGAGCTGAGATCTCGTGGCTTGTTTGTGAAGCTTTTGGAG 1664
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 ACGTTGGATTTGGCTTGTAAAGAGCTGAGATCTCGTGGCTTGTTTGTGAAGCTTTTGGAG 1398
Query 1665 GCAATACTTAAAGCTGGAAACAGAATGAACGCGGGTACCGCGAGAGGAAACGCTCAAGCG 1724
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1399 GCTATACTTAAAGCTGGAAACAGAATGAATGCGGGTACCGCGAGAGGAAATGCTCAAGCG 1458
Query 1725 TTTAATCTAACCGCGCTTTTGAAGCTTTCGGATGTTAAAAGCGTTGATGGGAAGACTTCT 1784
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 1459 TTTAATCTAACCGCGCTTTTGAAACTTTCGGATGTTAAAAGTGTTGATGGGAAGACTACT 1518
Query 1785 TTGCTTAACTTTGTAGTGGAGGAAGTTGTTAGATCGGAAGGAAAACGTTGTGTTATGAAT 1844
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1519 TTGCTTAACTTTGTGGTGGAGGAAGTTGTTAGATCGGAAGGAAAACGTTGTGTTTTGAAT 1578
Query 1845 AGAAGAAGCCATAGCTTAACACGAAGCGGTAGTAGTAACTACAATGGTGGTAATAGTAGT 1904
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1579 AGAAGAAGCCATAGCTTAACACGAAGCGGTAGTAGTAACAACAATGGTGGTAATAGTC-- 1636
Query 1905 CTTCAGGTTATGTCGAAAGAAGAGCAAGAGAAAGAGTACTTGAAGCTTGGTTTACCAGTT 1964
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1637 CT-CAGGTTATGTCGAAAGAAGAGCAAGAGAAAGAGTATTTGAAGCTTGGTTTACCAATT 1695
Query 1965 GTTGGTGGATTGAGCTCTGAGTTTTCAAACGTGAAGAAAGCTGCTTGTGTGGACTATGAA 2024
||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 1696 GTTGGAGGATTGAGCTCTGAGTTTTCAAACGTCAAGAAAGCTGCTAGTGTAGACTATGAC 1755
Query 2025 ACGGTTGTTGCAACTTGTTCTGCTCTTGCGGTTAGAGCGAAAGATGCGAAAACGGTGATT 2084
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1756 ACGGTTGTTGCAACTTGCTCTGCTCTTGCGGTTAGAGCGAAAGACGCAAAAACGGTGATT 1815
Query 2085 GGAGAATGTGAAGATGGAGAAGGAGGGAGGTTTGTGAA-AACGATGATGACGTTTCTTGA 2143
| ||||||||||||||||| | ||||||||||||||| || ||||||| |||||||||
Sbjct 1816 GCAGAATGTGAAGATGGAG--G-AGGGAGGTTTGTGAAGAA-GATGATGTTGTTTCTTGA 1871
Query 2144 TTCGGTAGAGGAAGAGGTGAAAATAG-CGAAAGGTGAAGAGAGGAAAGTGATGGAGCTTG 2202
|||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||
Sbjct 1872 TTCGGTAGAGGAAGAGGTGAAAAT-GTCGAAAGATGAAGAGAGGAAAGTAATGGAGCTTG 1930
Query 2203 TGAAACGTACAACGGATTATTATCAAGCAGGAGCTGTTACAAAGGGGAAGAATCCACTTC 2262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1931 TGAAACGTACAACGGATTATTATCAAGCAGGAGCTGTTACAAAGGGGAAGAATCCACTTC 1990
Query 2263 ATTTGTTTGTTATCGTTAGAGATTTTCTTGCCATGGTTGATAAAGTTTGCTTAGATATTA 2322
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1991 ATTTATTTGTTATAGTTAGAGATTTTCTTGCCATGGTTGATAAAGTATGCTTAGAGATTA 2050
Query 2323 TGAGAAATATGCAGAGGAGGAAGGTTGGTAGTCCGATATCGCCTTCTTCGCAGCGGAATG 2382
|| | |||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||
Sbjct 2051 TGCGGAATATGCAGAGGAGAAAGATTGGGAGTCCGGTATCGCCTTCTTCGCAGCGGAATG 2110
Query 2383 CGGTGAAATTCCCGGTTTTGCCTCCGAATTTCATGTCGGACAGAGCTTGGAGTGATTCTG 2442
| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 2111 CCGTGAAATTCCCAGTTTTGCCTCCGAATTTCATGTCGGTCAGAGCCTGGAGTGATTCAG 2170
Query 2443 GTGGGTCGGATTCTGATATGTGA 2465
||||||||||||| |||||||||
Sbjct 2171 GTGGGTCGGATTCCGATATGTGA 2193
Score = 377 bits (204), Expect = 2e-103
Identities = 249/270 (92%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 150 tctctctatctctctAAATGAGCTAAATCGTTAATGGCTGCCATGTTTAATCATCCATGG 209
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTATATCTCTCTAAATGAGCTAGATCGTTAATGGCTGCCATGTTTAATCATCCATGG 60
Query 210 CCT-A--ATTTAACCCTAATTTACTTCTTCTTCATCGTCGTTTTACCATTCCAATCACTT 266
||| | ||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||
Sbjct 61 CCTCATTATTTAACCCTAATTTTCTTCTTCTTCATAGTCGTTTTACCATTCCATTCATTT 120
Query 267 TCTCAATTTGATTCTCCTCAAAATATCGAAACTTTCTTCCCCATCTCTTCACTCTCCCCT 326
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TCTCAATCTGATTCTCCTCAAAATATCGAAACTTTCTTCCCCATCTCCTCACTCTCCCCT 180
Query 327 GTTCCACCACCGCTTCTTCCACCTTCGTCAAACCCATCTCCGCCGTCGAATAATTCATCA 386
|||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 181 GTTCCACCACCGCTGCTTCCACCGTCGTCAAACCCGTCTCCGCCGTCAAATAATTCATCT 240
Query 387 TCTTCGGATaaaaaaaCAATCACCAAAGCT 416
||| | ||| |||||||||||| ||||||
Sbjct 241 TCT--G-ATAGAAAAACAATCACAAAAGCT 267
> Ahg313260 jgi|Araly1|313260|fgenesh1_pm.C_scaffold_1002040
Length=2286
Score = 953 bits (516), Expect = 0.0
Identities = 1272/1622 (78%), Gaps = 112/1622 (7%)
Strand=Plus/Plus
Query 894 CCACCACCGCCACCACCGTCAATTGCGGTGAAACAGAGTGCACCAACGCCAT-CGCCACC 952
||||| || || |||||| ||||| ||||||| ||||||||| || | || | | || ||
Sbjct 727 CCACCGCCACCTCCACCGCCAATTCCGGTGAAGCAGAGTGCAACACCTCC-TCCTCCTCC 785
Query 953 TCCTCC---GATTAAGAAGGGTTCTTCACCATCGCCACCGCCACCTCCACCGGTGAAAAA 1009
|||||| | |||||| || | ||||| || ||||||||||||||| |||||||
Sbjct 786 TCCTCCTAAGCCTAAGAATGG----T--CCATCTCCGCCGCCACCTCCACCGTTGAAAAA 839
Query 1010 GGTTG-GAGCTTTATCATCATCAGCTTCGAAACCACCACCTGCGCCGG-T--TAGAGGAG 1065
| | | ||||| |||||||| | ||||||| |||| | |||||| | |||||||
Sbjct 840 GACAGCG-GCTTTGTCATCATCGGTTTCGAAAAAACCA-C--CGCCGGCTCCTAGAGGAT 895
Query 1066 CAAGTGGAGGAG-AGACTTCGAAA----CAAGTAAAG-TTGAAGCCTTTACATTGGGATA 1119
|| | ||| | || ||| ||| || |||||| || |||||||||||||||||||
Sbjct 896 CATCTTCAGGGGAAG-GTTC-AAATGGTCAGGTAAAGCTT-AAGCCTTTACATTGGGATA 952
Query 1120 AAGTAAACCCTGATTCCGATCATTCAATGGTTTGGGACAAAATCGATCGTGGATCATTCA 1179
|||| || |||||||| |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 953 AAGTCAATCCTGATTCTGATCATTCCATGGTTTGGGATAAAATCGATCGTGGCTCATTCA 1012
Query 1180 GTTTCGATGGCGATTTAATGGAAGCTCTGTTTGGATACGTTGCCGTGGGGAAGAAATCAC 1239
|||||||||||||| ||||||| ||||| || || ||||| || || || |||||||| |
Sbjct 1013 GTTTCGATGGCGATCTAATGGAGGCTCTCTTCGGCTACGTGGCGGTCGGAAAGAAATCTC 1072
Query 1240 CAGAAC-AAGGCGATGAGAAAAA-CC---CT-A-AATCA---ACGCA-AATATTCATACT 1288
||| || | |||| ||| ||||| || || | ||| || || | | || |||||
Sbjct 1073 CAG-ACGACGGCGGTGATAAAAAGCCTAGCTCAGCTTCACCGACCCAGACT-TTTATACT 1130
Query 1289 TGATCCGAGAAAGTCTCAAAACACAGCGATTGTGCTCAAATCATTAGGTATGACACGTGA 1348
||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 1131 TGACCCGAGAAAGTCTCAGAACACAGCAATTGTGCTCAAATCCTTAGGAATGACTCGTGA 1190
Query 1349 AGAGCTTGTTGAATCACTCATAGAAGGAAACGA-TTTCGTGCCAGACACTCTTGAGAGGT 1407
|||||||| ||||| | || ||||| |||| |||| | ||||| || || ||||||
Sbjct 1191 CGAGCTTGTGGAATCGTTAATGGAAGGTCACGATTTTCAT-CCAGATACACTAGAGAGGC 1249
Query 1408 TAGCTAGAATAGCTCCAACGAAAGAAGAACAATCAGCCATTCTTGAATTCGACGGTGACA 1467
| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1250 TCTCTAGAATAGCTCCAACGAAAGAAGAACAATCAGCGATTCTCCAATTCGACGGTGACA 1309
Query 1468 CGGCAAA-GCTTGCTGATGCGGAGA-CGTTTCT-GTTTCATCTTCTTAAATCC-GTGCCA 1523
|| ||| ||| || || || || | |||| || |||||||||||| ||| | |||||
Sbjct 1310 CGA-AAATGCTCGCAGACGCTGA-ATCGTT-CTTGTTTCATCTTCT-AAAGGCAGTGCCT 1365
Query 1524 ACCGCGTTTACGAGACTAAACGCGTTTCTCTTTAGGGCTAATTATTATCCAGAGATGGCT 1583
||||| || | || |||||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1366 TGTGCGTTCACTCGTCTTAACGCGTTACTCTTTAGAGCTAATTACTATCCAGAGAT--CT 1423
Query 1584 CAT-C-ATAGCAAATGTTTACAAACGTTGGATTTAGCTTGTAAAGAGCTGAGATCTCGTG 1641
|| | ||| ||||| | | || |||||||| || ||||||| |||||| ||||| ||||
Sbjct 1424 CAAACCATAACAAATCTCTCCAGACGTTGGACTTGGCTTGTACAGAGCTTAGATCACGTG 1483
Query 1642 GCTTGTTTGTGAAGCTTTTGGAGGCAATACTTAAAGCTGGAAACAGAATGAACGCGGGTA 1701
||||||| |||||||| ||||| || || || ||| |||||||||||||||| || || |
Sbjct 1484 GCTTGTTCGTGAAGCTATTGGAAGCGATTCTGAAATCTGGAAACAGAATGAATGCAGGAA 1543
Query 1702 CCGCGAGAGGAAACGCTCAAGCGTTTAATCTAACCGCGCTTTTGAAGCTTTCGGATGTTA 1761
| | |||||| | |||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 1544 CAACTAGAGGAGATGCTCAAGCTTTTAATCTCACCGCGCTTTTGAAGCTTTCCGATGTGA 1603
Query 1762 AAAGCGTTGATGGGAAGACTTCTTTGCTTAACTTTGTAGTGGAGGAAGTTGTTAGATCGG 1821
| || |||||||||||||| |||||||||||||||| ||||| ||||| |||||||| |
Sbjct 1604 AGAGTGTTGATGGGAAGACGACTTTGCTTAACTTTGTGGTGGAAGAAGTGGTTAGATCAG 1663
Query 1822 AAGGAAAACGTTGTGTTATGAATAGAAGAAGCCATAGCTTAACACGAAGCGGTAGTAGTA 1881
| || || || || || | || |||| | | || ||| || ||| ||| |||
Sbjct 1664 AGGGGAAGCGATGCGTGCTTAACCGAAG--G--A---CT-AAC-CGTAGCTTTAGCCGTA 1714
Query 1882 ACTACAATGGTGGTAATAGTAGTCTTC-AGGTTATGTCGAAAGAAGAGCAAGAGAAAGAG 1940
| | | | | || | | ||| | ||||||| ||||| ||||| |||||||| |||
Sbjct 1715 GC-AGTA-GCAG-TAC--G-A-TCTCCGAGGTTATATCGAAGGAAGAACAAGAGAAGGAG 1767
Query 1941 TA-CTT-GAAGCTTGGTTTACCAGTTGTTGGTGGATTGAGCTCTGAGTTTTCAAACGTGA 1998
|| ||| || || |||||||| |||||||| || || || |||||||| | || || |
Sbjct 1768 TATCTTAGA--CTCGGTTTACCTGTTGTTGGAGGGTTAAGTTCTGAGTTCACCAATGTTA 1825
Query 1999 AGAAAGCTGCTTG-TGTGGACTATGAAACGGTTGTTGCAACTTGTTCTG-CTCTTGCGGT 2056
|||||||||| | | | |||||||| || |||| |||||| || | || |||||||||
Sbjct 1826 AGAAAGCTGCA-GCTATAGACTATGACACAGTTGCTGCAACGTGCT-TGGCTCTTGCGGC 1883
Query 2057 TAGAGCGAAAGATGCGAAAACG-GTGATTGGAG-A-ATGTGAAG-A--TGG-A--GAAGG 2107
|||||||||||| || | | || ||| |||| | | | | |||| | | | |||||
Sbjct 1884 TAGAGCGAAAGACGCTAGA-CGAGTG-TTGGCGCAGA-GCGAAGGAGATAACAAAGAAGG 1940
Query 2108 AGGGAGGTTTGTGAA-AACGATGA-TGACGTTTCTTGATTCGGTAGAGGAAGAGGTGAAA 2165
|| |||||||||||| || ||||| ||| ||||||||||||||| |||||||| |||||
Sbjct 1941 AGAGAGGTTTGTGAAGAA-GATGAATGA-GTTTCTTGATTCGGTTGAGGAAGAAGTGAAG 1998
Query 2166 ATAGCGAAAGGTGAAGAGAGGAAAGTGATGGAGCTTGTGAA-ACGTACAACGGATTATTA 2224
|||||||| ||||||| ||||||| ||||||||||||| | | ||||| || |||||
Sbjct 1999 TTAGCGAAACAAGAAGAGAAGAAAGTGTTGGAGCTTGTGAAGA-GAACAACAGAGTATTA 2057
Query 2225 TCAAGCAGGAGCTGTTACAAAGGGGAAGAATCCACTTCATTTGTTTGTTATCGTTAGAGA 2284
|||||||||||||| | || || |||||||||||||||||||||||||| ||||||||
Sbjct 2058 CCAAGCAGGAGCTGTGA-AA-GGA-AAGAATCCACTTCATTTGTTTGTTATTGTTAGAGA 2114
Query 2285 TTTTCTTGCCATGGTTGATAAAGTTTGCTTAGATATTATGAGAAATATGCAGAGGAGGAA 2344
||||||||| ||||| |||||||||||| |||| || || ||| |||||||||||
Sbjct 2115 TTTTCTTGCAATGGTGGATAAAGTTTGCGTAGAGATCGCAAGGAATTTGCAGAGGAGG-- 2172
Query 2345 GGTTGGTAGTCCG-ATATCGCCTTCTTCGCAGCGGAATGCGGTGAAATTCCCGGTTTTGC 2403
| | | | | | | || | | | |||| ||||||| ||||| || ||||||||||
Sbjct 2173 GCATCG-A-TGGGGAG-TC-C-T-CA--GCAGAGGAATGCAGTGAAGTTTCCGGTTTTGC 2224
Query 2404 CTCCGAATTTCATGTCGGACAGAGCTTGGAGTGATTCTGGTGGGTCGGATTCTGATATGT 2463
||||||||||||||||||| ||| | | ||||||||| |||| || ||||| |||||||
Sbjct 2225 CTCCGAATTTCATGTCGGATAGATCAAGAAGTGATTCTCGTGGATCAGATTCCGATATGT 2284
Query 2464 GA 2465
||
Sbjct 2285 GA 2286
> Ahg932838 jgi|Araly1|932838|scaffold_400826.1
Length=222
Score = 219 bits (118), Expect = 1e-55
Identities = 183/213 (86%), Gaps = 10/213 (5%)
Strand=Plus/Plus
Query 2194 TGGAGCTTGTGAAACGTACAAC-G--GATTATTATCAAGCAGGAGCTGTTACAAAGGGGA 2250
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||| ||
Sbjct 8 TGGAGCTTGTGAAATGTACAACAGATTATTATTATCAAGCAGAAGCTGTTACAAA--GG- 64
Query 2251 AGAATCCACTTCATTTGTTTGTTATCGTTAGAGATTTTCTTGCCATGGTTGATAAAGTTT 2310
|||||| |||||| | |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 65 -GAATCCTCTTCATCTATTTGTTATTGTTAGAGATTTTCTTGCCATGGTTGATAAAGTAT 123
Query 2311 GCTTAGATATTATGA-GAAATATGCAGAGGAGGAAGGTTGGTAGTCCGATATCGCCTTCT 2369
||||||| ||||||| ||| |||||||||||| ||| |||| ||| | |||||| | ||
Sbjct 124 GCTTAGAGATTATGAAGAA-TATGCAGAGGAGAAAGATTGGGAGTAGG-TATCGCATGCT 181
Query 2370 TCGCAGCGGAATGCGGTGAAATTCCCGGTTTTG 2402
|||| ||||| ||| |||||||| |||||||||
Sbjct 182 TCGCGGCGGAGTGCCGTGAAATTGCCGGTTTTG 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92902107555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5