BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G70150.1

Length=1192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908599 jgi|Araly1|908599|Al_scaffold_0002_1680                   1225    0.0  


> Ahg908599 jgi|Araly1|908599|Al_scaffold_0002_1680
Length=1179

 Score = 1225 bits (663),  Expect = 0.0
 Identities = 943/1070 (88%), Gaps = 52/1070 (5%)
 Strand=Plus/Plus

Query  1     ATGGAGTGTGCCGCGCGTGGTTTTGCGACGCGGTGTGTTGGTCCACCGACGCGGAGGTGT  60
             |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct  1     ATGGAGTGTGCCGCGCGTGGGTTTGCAACGCGGTGCGTTGGTCCACCGACGCGGAGGTGT  60

Query  61    GGTCAGTGTGGTGCTGTAGCTTATTGCTCCGTCTCTCATCAGATTTCGCATTGGAGCTAT  120
             || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61    GGCCAGTGTGGTGCTGTAGCTTATTGCTCCGTCTCTCATCAGATTTCACATTGGAGCTAT  120

Query  121   CACAAGGAAGAATGTGAGAGATTAGAAGAGCAAATGCGTCGTGTTGATCTTTTAAATGAT  180
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121   CACAAGGAAGAATGTGAGAGATTAGAAGAGCAAATGCGTCGTGTTGATCTGTTAAATGAT  180

Query  181   TTTCCATTTACATTTACAGAAGAAGCTACAATTCAGGTTAGTCAAAAACATGAGACTAGG  240
             |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct  181   TTTCCATTTACATTTACAGAAGAAGCTACGGTTCAGGTTAGTCAAAAACATGAGACTAGG  240

Query  241   TGCTCG-TTCTTCAT-CAAGAGGGGA-TTACATCGTGTTGGAATGTGGATGTATGAGTGT  297
             |||||| ||| || |  || | |||| ||||||||||||||||||||||||||||| |||
Sbjct  241   TGCTCGTTTC-TC-TGTAA-ACGGGAGTTACATCGTGTTGGAATGTGGATGTATGAATGT  297

Query  298   AACTGTGGA------G-C----TTT-GGCTTTTGATAGTTTTAATATTGAAGGGTGGCAT  345
             |||||||||      | |    ||| |||||| ||||||||||||| ||| || ||||||
Sbjct  298   AACTGTGGAGCTTCTGCCGGTTTTTCGGCTTTCGATAGTTTTAATAATGACGGTTGGCAT  357

Query  346   -TTGCCGAGCTCTTCTTGTCCATGTCGTGGGCCTTTATCTCCAATAACTAAACAGCTATG  404
              || ||||||||||||||||||||||| || |||||||||||| | || |||| ||||||
Sbjct  358   CTT-CCGAGCTCTTCTTGTCCATGTCGCGGTCCTTTATCTCCAGTTACAAAACTGCTATG  416

Query  405   TACTTGGAAGGATTATTTCGAGTGGAGAAAGTTACCTCTAGATTCACCTGTAGCTCTACT  464
             || |||||  ||||||||||| ||||||||| ||||||| ||||| ||||| ||||||||
Sbjct  417   TAGTTGGACTGATTATTTCGAATGGAGAAAGATACCTCTTGATTCTCCTGTGGCTCTACT  476

Query  465   TCT-C-C---A-----CTG--------GCCACTTACGATATATCATGCAGTTCAAGCCAT  506
             ||| | |   |     |||        |||||||||||||||||||||| ||||||||||
Sbjct  477   TCTCCACTGGAGCTTGCTGTTATTTCAGCCACTTACGATATATCATGCAATTCAAGCCAT  536

Query  507   TGGGATGGGAAATTTGACTCCCCAAATAAGTGATGAACTTCGTATACATTATCTTGGGCC  566
             |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  537   TGGGTTGGGAAATTTAACTCCCCAAATAAGTAATGAACTTCGTATACATTATCTTGGCCC  596

Query  567   TCAGAAGGAACTTGGGCAACTTGGTGTTTTTGCTGAGCTGCAAGCGCTCTTCCCTGGTCT  626
             |||||| || ||||| ||||||||||| ||  ||||||||||||| ||||||||||||||
Sbjct  597   TCAGAAAGAGCTTGGCCAACTTGGTGTCTTCACTGAGCTGCAAGCCCTCTTCCCTGGTCT  656

Query  627   GCGCATTTATGTAGA-TTTGATTGGACCTGACGTTCCACAACATATGGATGGAGAAATGA  685
             ||||||  | |||||  ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct  657   GCGCATACACGTAGAGCTTG-TTGGACCTGACGTTCCACAACATATGGATGGAGAGATGA  715

Query  686   TCTCCCTTTGCAGATATTCCCCTTGCATGGGAA-AAGAATGTGAATGTAAAAATTCAAGC  744
             |||| ||| ||||||||||||||||||| |||| ||||||| ||||||||  ||||||| 
Sbjct  716   TCTCACTTAGCAGATATTCCCCTTGCAT-GGAAGAAGAATGCGAATGTAATTATTCAAGT  774

Query  745   AAAATTCTCAATTCCGGGAGCAAACCTGCTTTGGT-TTCGGCTGTGTCATTACAGCTCCG  803
              |||   |   |||||| ||| || ||||  |||| ||| |||||||| |||||||||| 
Sbjct  775   GAAA---T---TTCCGGTAGCGAATCTGC-CTGGTCTTCAGCTGTGTCGTTACAGCTCCA  827

Query  804   TAGAGGGTTTTACCATGATCGTTACAATGACATAACAAAGGATTCATTTCCTCCACACAT  863
             |||||||||||||||||||| |||||  |||||||||||| |||||  |||||| |||||
Sbjct  828   TAGAGGGTTTTACCATGATCTTTACACCGACATAACAAAGAATTCACCTCCTCCTCACAT  887

Query  864   AGTGATTGCTCCAAACGCAGGCATCGCTGCATATCCAAGCTGGTTGCCAACTATTGAACT  923
             |||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||
Sbjct  888   AGTGATTGCTCCAAACGCCGGCGTCGCAGCATATCCAAGTTGGTTGCCAACTATTGAACT  947

Query  924   GATAAAGGAGATACA-AGTCCCAGCAGTATTCTCTGATTACTGTGAAGAAGCTTGTCATC  982
             ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  948   GATAAAGGAGATA-AGAGTGCCAGCAGTATTCTCTGATTACTGTGAAGAAGCTTGTCATC  1006

Query  983   TGGCTGCTTGTTGCATTAAAACCATCACAGGACAACCTCTATCATCACCT  1032
             |||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct  1007  TGGCGGCTTGTTGCATTAAAACCATCACAGGACAACCTATATCATTACCT  1056



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44489444139


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5