BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70150.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908599 jgi|Araly1|908599|Al_scaffold_0002_1680 1225 0.0
> Ahg908599 jgi|Araly1|908599|Al_scaffold_0002_1680
Length=1179
Score = 1225 bits (663), Expect = 0.0
Identities = 943/1070 (88%), Gaps = 52/1070 (5%)
Strand=Plus/Plus
Query 1 ATGGAGTGTGCCGCGCGTGGTTTTGCGACGCGGTGTGTTGGTCCACCGACGCGGAGGTGT 60
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGTGTGCCGCGCGTGGGTTTGCAACGCGGTGCGTTGGTCCACCGACGCGGAGGTGT 60
Query 61 GGTCAGTGTGGTGCTGTAGCTTATTGCTCCGTCTCTCATCAGATTTCGCATTGGAGCTAT 120
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GGCCAGTGTGGTGCTGTAGCTTATTGCTCCGTCTCTCATCAGATTTCACATTGGAGCTAT 120
Query 121 CACAAGGAAGAATGTGAGAGATTAGAAGAGCAAATGCGTCGTGTTGATCTTTTAAATGAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CACAAGGAAGAATGTGAGAGATTAGAAGAGCAAATGCGTCGTGTTGATCTGTTAAATGAT 180
Query 181 TTTCCATTTACATTTACAGAAGAAGCTACAATTCAGGTTAGTCAAAAACATGAGACTAGG 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TTTCCATTTACATTTACAGAAGAAGCTACGGTTCAGGTTAGTCAAAAACATGAGACTAGG 240
Query 241 TGCTCG-TTCTTCAT-CAAGAGGGGA-TTACATCGTGTTGGAATGTGGATGTATGAGTGT 297
|||||| ||| || | || | |||| ||||||||||||||||||||||||||||| |||
Sbjct 241 TGCTCGTTTC-TC-TGTAA-ACGGGAGTTACATCGTGTTGGAATGTGGATGTATGAATGT 297
Query 298 AACTGTGGA------G-C----TTT-GGCTTTTGATAGTTTTAATATTGAAGGGTGGCAT 345
||||||||| | | ||| |||||| ||||||||||||| ||| || ||||||
Sbjct 298 AACTGTGGAGCTTCTGCCGGTTTTTCGGCTTTCGATAGTTTTAATAATGACGGTTGGCAT 357
Query 346 -TTGCCGAGCTCTTCTTGTCCATGTCGTGGGCCTTTATCTCCAATAACTAAACAGCTATG 404
|| ||||||||||||||||||||||| || |||||||||||| | || |||| ||||||
Sbjct 358 CTT-CCGAGCTCTTCTTGTCCATGTCGCGGTCCTTTATCTCCAGTTACAAAACTGCTATG 416
Query 405 TACTTGGAAGGATTATTTCGAGTGGAGAAAGTTACCTCTAGATTCACCTGTAGCTCTACT 464
|| ||||| ||||||||||| ||||||||| ||||||| ||||| ||||| ||||||||
Sbjct 417 TAGTTGGACTGATTATTTCGAATGGAGAAAGATACCTCTTGATTCTCCTGTGGCTCTACT 476
Query 465 TCT-C-C---A-----CTG--------GCCACTTACGATATATCATGCAGTTCAAGCCAT 506
||| | | | ||| |||||||||||||||||||||| ||||||||||
Sbjct 477 TCTCCACTGGAGCTTGCTGTTATTTCAGCCACTTACGATATATCATGCAATTCAAGCCAT 536
Query 507 TGGGATGGGAAATTTGACTCCCCAAATAAGTGATGAACTTCGTATACATTATCTTGGGCC 566
|||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 537 TGGGTTGGGAAATTTAACTCCCCAAATAAGTAATGAACTTCGTATACATTATCTTGGCCC 596
Query 567 TCAGAAGGAACTTGGGCAACTTGGTGTTTTTGCTGAGCTGCAAGCGCTCTTCCCTGGTCT 626
|||||| || ||||| ||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 597 TCAGAAAGAGCTTGGCCAACTTGGTGTCTTCACTGAGCTGCAAGCCCTCTTCCCTGGTCT 656
Query 627 GCGCATTTATGTAGA-TTTGATTGGACCTGACGTTCCACAACATATGGATGGAGAAATGA 685
|||||| | ||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 657 GCGCATACACGTAGAGCTTG-TTGGACCTGACGTTCCACAACATATGGATGGAGAGATGA 715
Query 686 TCTCCCTTTGCAGATATTCCCCTTGCATGGGAA-AAGAATGTGAATGTAAAAATTCAAGC 744
|||| ||| ||||||||||||||||||| |||| ||||||| |||||||| |||||||
Sbjct 716 TCTCACTTAGCAGATATTCCCCTTGCAT-GGAAGAAGAATGCGAATGTAATTATTCAAGT 774
Query 745 AAAATTCTCAATTCCGGGAGCAAACCTGCTTTGGT-TTCGGCTGTGTCATTACAGCTCCG 803
||| | |||||| ||| || |||| |||| ||| |||||||| ||||||||||
Sbjct 775 GAAA---T---TTCCGGTAGCGAATCTGC-CTGGTCTTCAGCTGTGTCGTTACAGCTCCA 827
Query 804 TAGAGGGTTTTACCATGATCGTTACAATGACATAACAAAGGATTCATTTCCTCCACACAT 863
|||||||||||||||||||| ||||| |||||||||||| ||||| |||||| |||||
Sbjct 828 TAGAGGGTTTTACCATGATCTTTACACCGACATAACAAAGAATTCACCTCCTCCTCACAT 887
Query 864 AGTGATTGCTCCAAACGCAGGCATCGCTGCATATCCAAGCTGGTTGCCAACTATTGAACT 923
|||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 888 AGTGATTGCTCCAAACGCCGGCGTCGCAGCATATCCAAGTTGGTTGCCAACTATTGAACT 947
Query 924 GATAAAGGAGATACA-AGTCCCAGCAGTATTCTCTGATTACTGTGAAGAAGCTTGTCATC 982
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GATAAAGGAGATA-AGAGTGCCAGCAGTATTCTCTGATTACTGTGAAGAAGCTTGTCATC 1006
Query 983 TGGCTGCTTGTTGCATTAAAACCATCACAGGACAACCTCTATCATCACCT 1032
|||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1007 TGGCGGCTTGTTGCATTAAAACCATCACAGGACAACCTATATCATTACCT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5