BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70170.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476141 jgi|Araly1|476141|fgenesh2_kg.2__1271__AT1G70170.1 2285 0.0
> Ahg476141 jgi|Araly1|476141|fgenesh2_kg.2__1271__AT1G70170.1
Length=1487
Score = 2285 bits (1237), Expect = 0.0
Identities = 1394/1469 (95%), Gaps = 14/1469 (1%)
Strand=Plus/Plus
Query 27 tctctct-tctctctctcaaattctctcCTAAAATCCTAAATATTACCTTCTCCATTTGT 85
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 21 TCTCTCTCTCTCTCTCTCAAATTCTCTCCTAAAATCCTAAATATTACCTTCTCCATATGT 80
Query 86 TTCTTTTCTTCTTTTTTGGGTGGCTACCTATAATCCGAAAACCACCATGAGGTTTTGTGT 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TTCTTTTCTTCTTTTTTGGGTGGCTACCTATAATCCGAAAACCACCATGAGGTTTTGTGT 140
Query 146 TTTCGGGTTTTTATCGCTTTTCTTGATTGTTTCTCCTGCCTCCGCCTGGTTCTTCCCTAA 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TTTCGGGTTTTTATCGCTTTTCTTGATTGTTTCTCCTGCCTCCGCCTGGTTCTTCCCTAA 200
Query 206 CTCCACCGCGGTACCACCGTCTCTACGTAACACTACACGTGTTTTCTGGGACGCTTTCTC 265
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CTCCACCGCGACACCACCGTCTCTACGTAACACTACACGTGTTTTCTGGGACGCTTTCTC 260
Query 266 CAATTTCACCGGTTGTCACCACGGCCAAAACGTTGATGGTCTCTACCGTATCAAAAAATA 325
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 261 CAATTTTACCGGTTGTCACCACGGCCAAAACGTTGAAGGTCTCTACCGCATCAAAAAATA 320
Query 326 CTTCCAACGTTTTGGTTACATCCCTGAAACGTTTTCGGGAAATTTCACCGATGATTTTGA 385
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 321 CTTCCAACGTTTTGGTTACATCCCTGAAACGTTTTCAGGAAATTTCACCGATGATTTTGA 380
Query 386 TGATATCCTCAAAGCCGCTGTCGAATTGTATCAGACGAATTTCAATCTTAACGTTACCGG 445
||||||||||||| | ||||| ||||||||||||| ||||||||| ||||||||||| ||
Sbjct 381 TGATATCCTCAAAACAGCTGTTGAATTGTATCAGAGGAATTTCAAGCTTAACGTTACGGG 440
Query 446 TGAGCTTGATGCGCTTACCATTCAACACATCGTGATCCCGCGTTGCGGTAATCCTGACGT 505
||||| ||||| | |||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 441 AGAGCTCGATGCTATGACCATTAAACACATCGTGATCCCGCGTTGTGGTAATCCCGACGT 500
Query 506 GGTCAACGGTACTTCGTTGATGCATGGCGGGAGAAGAAAGACCTTCGAGGTCAACTTCTC 565
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GGTCAACGGTACTTCTTTGATGCATGGCGGGAGAAGAAAGACCTTCGAGGTCAACTTCTC 560
Query 566 CCGCACGCATTTGCACGCGGTTAAACGCTACACGTTATTCCCAGGCGAGCCACGGTGGCC 625
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 561 CCGCACGCATTTGCACGCGGTTAAACGCTACACGTTGTTCCCAGGCGAGCCACGGTGGCC 620
Query 626 GAGAAACCGCCGTGACTTGACCTACGCGTTCGACCCGAAAAACCCGTTGACGGAAGAGGT 685
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 621 AAGAAACCGCCGTGACTTGACCTACGCGTTTGACCCGAAAAACCCCTTGACAGAAGAGGT 680
Query 686 CAAGAGCGTGTTCTCACGCGCTTTTGGTCGTTGGTCTGACGTCACCGCGTTAAACTTCAC 745
|||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct 681 CAAGAGCGTGTTCTCACGCGCTTTCGGCCGTTGGTCGGACGTCACCGCGTTGAACTTCAC 740
Query 746 TCTTTCCGAGTCTTTCTCGACGTCTGACATCACAATCGGATTCTACACCGGCGACCATGG 805
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 741 GCTTTCCGACTCTTTCTCGACGTCCGACATCACAATCGGATTCTACACCGGCGATCACGG 800
Query 806 TGACGGAGAGCCTTTCGACGGCGTTTTGGGAACATTAGCTCACGCTTTCTCTCCTCCCAG 865
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 801 TGACGGCGAGCCTTTCGACGGCGTTTTGGGAACCTTAGCTCACGCTTTCTCTCCTCCTAG 860
Query 866 CGGGAAATTCCACCTAGACGCAGATGAGAACTGGGTGGTCTCCGGAGACCTAGACAGTTT 925
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 861 CGGGAAATTCCACCTAGACGCAGACGAGAACTGGGTGGTCTCCGGAGACCTAGACAGTTT 920
Query 926 CCTCTCCGTAACTGCTGCGGTTGATCTTGAATCAGTGGCGGTTCACGAGATCGGTCATCT 985
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 921 CCTCTCCGTAACTGCTGCGGTTGATCTTGAATCGGTAGCGGTTCACGAGATCGGTCATCT 980
Query 986 TCTAGGTTTAGGACATTCTTCAGTTGAGGAATCCATCATGTATCCAACGATCACGACAGG 1045
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 981 TCTCGGTTTAGGACATTCGTCAGTTGAAGAATCCATCATGTATCCAACGATCACGACGGG 1040
Query 1046 GAAACGTAAGGTTGACTTAACCAATGATGACGTGGAAGGAATCCAATACTTGTACGGTGC 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1041 GAAACGTAAGGTTGACTTAACCAATGATGACGTGGAAGGAATCCAATACTTGTACGGCGC 1100
Query 1106 AAACCCTAACTTCAACGGCACAACATCTCCACCGTCGACCACTAAACACCAGCGAGACAC 1165
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1101 GAACCCTAACTTCAACGGCACAACATCTCCACCGTCGACCACTAGACACCAGCGAGACAC 1160
Query 1166 TGGTGGCTTCAGTGCCGCCTGGAGAATCGACGGTTCATCGAGATCAACAATTGTTAGTCT 1225
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1161 TGGTGGCTTCAGTGCCGCCTGGAGAATCGACGGTTCATCGAGATCGACAATTGTCAGTCT 1220
Query 1226 CTTGTTGTCAACCGTCGGATTGGTCTTGTGGTTCTTACCGTAGATAAAGttttttttttC 1285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1221 CTTGTTGTCAACCGTCGGATTGGTCTTGTGGTTCTTACCGTAGATAAAGTTTTTTTA--C 1278
Query 1286 TTACTTCAATTCTTTTAGTTTGATTTA-----CCTCATATCTTATTCtttttttATTAAA 1340
|||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1279 TTACTTGAATTCTTTTAGTTTGATTTAATTTACCTCATATCTTATTCTTTTTTTATTGAA 1338
Query 1341 GGATGGGGATATATATACACACATATTTAGACATTGGTTCCTTT--T--CTACAGTTTTT 1396
||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||
Sbjct 1339 GGATGGGGATATATATACACACATATTCAGACATTGGTTCCTTTAATTTCTATAGTTTTC 1398
Query 1397 GATTTCACATATACTACTTGTATATAAATTACTTTATGTCCTATA--CCTATGTTTGATT 1454
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1399 GATTTCACATATACTACTTGTATATAAATTACTTTATGTCCTATATACCAATGTTTGATC 1458
Query 1455 TCGTGTTATACATTTTCTTAGCTTTCTTT 1483
||||||| ||||||||||||||||| |||
Sbjct 1459 TCGTGTTTTACATTTTCTTAGCTTTGTTT 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5