BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70190.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476144 jgi|Araly1|476144|fgenesh2_kg.2__1274__AT1G70190.1 1053 0.0
Ahg900571 jgi|Araly1|900571|Al_scaffold_0004_1221 185 5e-46
> Ahg476144 jgi|Araly1|476144|fgenesh2_kg.2__1274__AT1G70190.1
Length=798
Score = 1053 bits (570), Expect = 0.0
Identities = 763/846 (90%), Gaps = 54/846 (6%)
Strand=Plus/Plus
Query 63 AGTGCTTAAAGATGAGCTTAGTTCTCAGATTCAGGCAACATTTATCTCAAACCTCATCCA 122
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1 AGTGCTTAAAGATGAGCTTAGTTCTCAGATTGAGGCAACATTTATCTCAAACCTCCTCCA 60
Query 123 GATTATCACTTC-TTTCTCGAATCGGCGGTTACCGGAGTTACACCCAACCGGCgaagatt 181
||||||||| || || | ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 61 GATTATCAC-TCATTCCCCGAATCGGCGGTTACCGGAGTTATACCCAACCAGCGAAGATT 119
Query 182 gaagat---gaagaagaagaagaaTTCGATCAGAGAAAGCTCCCAACAGATTACGATCCA 238
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAGATGAAGAAGAAGAAGAAGAATTCGATCAGAGAAAGCTCCCAACAGATTACGATCCA 179
Query 239 GCTACTTTTGATCCAACAGAGCATCGAAGTCCACCAACGGATCGTGTATTCAGACTCGTA 298
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTACGTTTGATCCAACAGAACATCGAAGTCCACCAACGGATCGTGTATTCAGACTCGTA 239
Query 299 GACGAGATCTCATCTCTAACATTATTAGAAATCTCCGAGCTTGGTTCGATTATAATGAAG 358
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 GACGAGATCTCATCTCTAACATTATTAGAAATCTCCGAGCTTGGTGAGATTATAATGAAG 299
Query 359 AAGAAAGGTATGACGGAGTTACCAACAGTCGCTGTTATGAAACCTGGAGCtggtggtggt 418
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 AAGAAAGGTATGACGGAGCTACCAACAGTCGCAGTTATGAAACCTGGAGCTGGTGGTGGT 359
Query 419 gttggtgttggtggtggtggtgggatggtgagtcaaagtggtgtgagtgAAGAAGCTAAA 478
| | || | ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 360 G--G-TG--G-TGG-G--------ATGGTGAGTCAAAGTGGTGTGAGTGAAGAAGCTAAA 404
Query 479 GTGGAGAAGACAGTGTTTGAGATAAAGTTGGAGTCTTTTGAAGCATCTGCTAAGATTAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GTGGAGAAGACAGTGTTTGAGATAAAGTTGGAGTCTTTTGAAGCATCTGCTAAGATTAAG 464
Query 539 ATTATTAAAGAGTTAAGGAGTTTTACTGATTTGGGTTTGAAAGAAGCTAAAGCTTTGGTT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 ATTATTAAAGAGTTAAGGAGTTTTACTGATTTGGGTTTGAAAGAAGCTAAAGCTTTGGTG 524
Query 599 GAGAAGACTCCTGCTATTTTGAAAGCTGGTTTGTCTAAAGAAGAAGGTGAGAAGATTCTT 658
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GAGAAGACTCCTGCCATTTTGAAAGCTGGTTTGTCTAAAGAAGAAGGTGAGAAGATTCTT 584
Query 659 GAGAAGTTGAAAGCACTTGGTGCTAAAGTTGTGTTGGAGTGATCATC-TAAAGGTTCGAT 717
|||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||
Sbjct 585 GAGAAGTTGAAAGCACTTGGTGCTAAAGTTGTTTTGGAGTGATCATCATCAAGGTTGGAT 644
Query 718 TTTT-CTGCTTTTGTTCCGTGTATGAGCTCAAGATACAAAGCTGATTAAGGTTTTATAAA 776
|||| || |||||||||| | |||||||||||||||||| | | | | || | |
Sbjct 645 TTTTTCTTCTTTTGTTCCATCTATGAGCTCAAGATACAA-G-T--T---G-TT--ACA-- 692
Query 777 GGGTCATAGTTGTTACACTTGCTCTTTCTTTCTCATTGCTAAATTGGTTTTGTTGAGAGA 836
| | | | | | || ||||||| | ||||||||||||| ||| | ||||||
Sbjct 693 ----C-T--T-GCT-C--TT--TCTTTCT--C--ATTGCTAAATTGGGTTT-T-GAGAGA 733
Query 837 TGGATCTTTGTTAGTTCAAGAATGTATCGCTGAATAATAGAAGTGTAGACTTTGTTTTAG 896
|| ||||||| |||||||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 734 TGAATCTTTGCTAGTTCAAGA-TGTATTGCAGAATAATACAAGTGTAGACTTTGTTTTAG 792
Query 897 TGTGTT 902
| ||||
Sbjct 793 TTTGTT 798
> Ahg900571 jgi|Araly1|900571|Al_scaffold_0004_1221
Length=210
Score = 185 bits (100), Expect = 5e-46
Identities = 131/146 (90%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 544 TAAAGAGTTAAGGAGTTTTACTGATTTGGGTTTGAAAGAAGCTAAAGCTTTGGTTGAGAA 603
||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 54 TAAGGAGTTGAGGAGTTTTACTGATTTGGGTTTGAAAGAAGTTAAAGCATTGGTGGAGAA 113
Query 604 GACTCCTGCTATTTTGAAAGCTGGTTTGTCTAAAGAAGAAGGTGAGAAGATTC-TTGAGA 662
||||| ||| |||||||||||| | |||||||||||||||| |||||| || | ||||||
Sbjct 114 GACTCATGCGATTTTGAAAGCTAGATTGTCTAAAGAAGAAGATGAGAAAAT-CGTTGAGA 172
Query 663 AGTTGAAAGCACTTGGTGCTAAAGTT 688
|||||||||| ||||||| |||||||
Sbjct 173 AGTTGAAAGCTCTTGGTGTTAAAGTT 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5