BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70200.1
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926333 jgi|Araly1|926333|scaffold_201894.1 2246 0.0
> Ahg926333 jgi|Araly1|926333|scaffold_201894.1
Length=1654
Score = 2246 bits (1216), Expect = 0.0
Identities = 1530/1676 (91%), Gaps = 44/1676 (3%)
Strand=Plus/Plus
Query 31 GAAAA-GAAAACACATAGCTATGAACGGAGCTTCGCTCTGCAACTCCGTTTTGCTTCAtt 89
||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1 GAAAACGAAAACACAAAGCTATGAACGGAGCTACGCTCTGCAATTCCGTTTTGCTCCATT 60
Query 90 ctcattctctctc-tcgtttt-c----agtcatc--c-tcttcttcttgttctgtgtatc 140
||| || || || ||||||| | |||| || | |||||||||| ||||| ||||
Sbjct 61 CTCGTTTTCAGTCATCGTTTTCCTTTAAGTCTTCTTCTTCTTCTTCTTCTTCTGCATATC 120
Query 141 tgatttcttctGCGCGTACTACGTCTAAGTATATCTCAATTTCTCATAGAATTCGACAGA 200
|||||||| || ||| |||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 121 TGATTTCTCCTTCGCTTACTACATCTAAGTATACCTCAATTTCTCATAGAATTCGACAAA 180
Query 201 GCTTTCGAGAAGTTATTGAAAAAAGGAGTAATGGGTTTTGTTCATTCGCTGT-AAACAAG 259
||||||||| |||||| |||||||| |||||||||||||||| ||||||||| ||| |||
Sbjct 181 GCTTTCGAGCAGTTATCGAAAAAAGAAGTAATGGGTTTTGTTTATTCGCTGTCAAA-AAG 239
Query 260 CGTAGA-AGTG-GC-GAT-TCCGTTATTG-TGGAGTCAGACgatgatgatgaagaagatg 314
|||| | || || ||| || | || ||||| ||| || || || ||||||||||
Sbjct 240 CGTA-ATTCTGAGCTGATGGACG--A-TGATGGAG-AAGAAGAAGAAGAAGAAGAAGATG 294
Query 315 atgaagattggggtgaatttgatggagaagatgaaggagaagaagaagaagaagatgaag 374
|||| |||||||||||||||||| | | | | | ||| |||||||| ||||||||||
Sbjct 295 ATGAGGATTGGGGTGAATTTGAT---G-A-A-G-A--AGATGAAGAAGATGAAGATGAAG 345
Query 375 gagaGTTCTTACCAATGGATAAGATGAAGAAATGGTTAGAGAAAAAGCCTCGTGGATTTG 434
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GAGAGTTTTTACCAATGGATAAGATGAAGAAATGGTTAGAGAAAAAGCCTCGTGGATTTG 405
Query 435 GTTTAGGTAAAAAGTACGAAACTT-TAATTGAAGATAAGTTGCTCGACGAAATTGAGCAA 493
| |||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 406 GGTTAGGTAAAAAGTACGAAACTTCT-ATTGAAGATAAGTTGCTCGACGAAATTCAGCAA 464
Query 494 AGTTGGAAAGCTCAAGCTGCTAATCTCAATAAGCTTAAGAATGATCCTCTCAAGTCTCAA 553
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AGCTGGAAAGCTCAAGCTGCTAATCTCAATAAGCTTAAGAATGATCCTCTCAAGTCTCAA 524
Query 554 CAGCTTAAGCGTGACGATAATCTCCTCAAAGGAACTGGAGAAACTCAAATTGGGTTTCGT 613
||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 525 CAGCTTAAGCGTGACAATAATCTCATCAAAGGAACTGGAGAAACTGAAATAGGGTTTCGT 584
Query 614 GTTCGTGTGACTAATCTTCCTAAGAAGAAGAATGTTCATAGAGATCTTAAGGTTGCGTTT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GTTCGTGTGACTAATCTTCCTAAGAAGAAGAATGTTCATAGAGATCTTAAGGTTGCGTTT 644
Query 674 AAAGAAGTAAGTGGCGTTTTGAGTATAACACCAGCTGTGTCTGGGAATAAGAAGACTAAG 733
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 645 AAAGAAGTAAGTAGCGTTTTGAGTATAACACCAGCTGTGTCTGGGAATAAAAAGACTAAG 704
Query 734 GATCCTGTGTGTAAAGGATTTGCTCATGTTGATTTCAAAACTGAGATTGATGCAAACAGG 793
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GACCCTGTGTGTAAGGGATTTGCTCATGTTGATTTCAAAACTGAGATTGATGCAAACAGG 764
Query 794 TTTGTGAAACAGTTCACGGGACAGAGCTTAGCATTTGGGAAGGTTATAAAGCAAATCAAA 853
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 765 TTTGTGAAACAGTTCACTGGACAGAGCTTAGCATTTGGGAAGGTTATAAAGCAGATTAAA 824
Query 854 TGTCAGGTTGTGGAGTTTACTTCTGATGATTCTGTATCGAAGGAAGTGTACTTAGATAAC 913
||||||||||| ||||||||||| ||||| || | ||||||||||||||||||||||||
Sbjct 825 TGTCAGGTTGTTGAGTTTACTTCAGATGAATCGGGATCGAAGGAAGTGTACTTAGATAAT 884
Query 914 GGTTTCAAGGTGCAGAAGCTTCCGTATTCTGGTCTTGAAGGAGATTCTAGTGCTGATGTT 973
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 885 GGTTTCAAGGTGCAGAAGCTTCCGTATTCTGGTCTTGAAGGAGATTCTATTGCTGATGTT 944
Query 974 GTTGAAGAAGAGGTTTTGTTGGGTTCAGGGGAAGAATCGGATGATTCAGAAGAAGAGGTA 1033
||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||| ||
Sbjct 945 GTTGAAGAAGAGGCTTTCTTGAGTTCAGGGGAAGAATCTGATGATTCAGAAGAAGAGCTA 1004
Query 1034 GATGAAA-GAGAAGTGGAAGACGATGAGCGGAATCATATCTCTAGTAGCATAGAATCTTC 1092
|||||| | ||||||||||| |||| ||| |||||||||||||||||||| |||||| |
Sbjct 1005 TATGAAACG-GAAGTGGAAGAAGATGTGCGAAATCATATCTCTAGTAGCATTGAATCTCC 1063
Query 1093 TCCCATTGAAATGACACGTGATTCG-AATACCAAGTTAAAGTTTGAGAAACAAGTTGTGA 1151
|||| ||||| ||| |||||||| | || ||| ||||||||||||||||| |||||||||
Sbjct 1064 TCCCGTTGAACTGAGACGTGATTTGGAA-ACCGAGTTAAAGTTTGAGAAAGAAGTTGTGA 1122
Query 1152 AGCGAGAGATAAGAGAACATGAGGAACTAGAGACACCTTTAGTTTCATTCCAGGTGAATA 1211
|||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1123 AGCGAGAGATAAGAGAGCATGAGGAACTAGAGACACCTTTAGTTTCATTCCACGCGAATA 1182
Query 1212 AATCTGAGGAAGCTGCAGCGGAAACACACTTGGATGATGAACAAT-CTGAGGAAGCTGTA 1270
|||| |||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 1183 AATCCGAGGAAGCTGTAGCGGAAACACGCTTGGATGATGAACAATAC-GAGGAAGCTGTA 1241
Query 1271 GCAGAAACACTCTTGAATGATGAACTTGATGGGGATGATGAAGAAGAAGTTGCTGAAGAC 1330
||||||||| ||||| |||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 1242 GCAGAAACATTCTTGGATGATGAACTTGGTGGGGATGATGTAGAAGAAGTCGCTGAAGAG 1301
Query 1331 AATCTTGAACCTCTGAACAGTTCATTGTCATCCTCAGAAGAAAATAGAGTAGATAGAATC 1390
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 1302 AATCTTGAACCTCTGAACAATTTATTGTCATCCTCAGAAGAAAATCGAGTAGATAGAATC 1361
Query 1391 CGTAGGCTAGAGCAAAAGCTTCTCGGTAAAGAAAAACTCTTGGGTGGAGGAGTTGGCTTT 1450
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 CGCAGGCTGGAGCAAAAGCTTCTCGGTAAAGAAAAACTCTTGGGTGGAGGAGTTGGCTTT 1421
Query 1451 GATAAACCAGAAGCAAAACCCGCTAGAGTTgaaggaaagaagaaggagaaaaagaagaag 1510
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1422 GATAAACCAGAAGCGAAACCCGCTAGAGTCGAAGGGAAGAAGAAGGAGAAAAAGAAGAAG 1481
Query 1511 acaaagattcttgtgaaaggccaagccaaaaaggggacaaagaTAGAAATCCCTGGATCA 1570
|||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||
Sbjct 1482 ACAAAGATTCTTGTGAAAGGGCAAGCGAAAAAGAGCTCAAAGATAGAAATCCCTGGATCT 1541
Query 1571 TCAAAGAGGTTAAAGGTGAAGGAGAAGGCTCTATTAACTGGCGTCTTAGTCAAGTATGCG 1630
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1542 TCAAAGAGATTAAAGGTGAAGGAGAAGGCTCTCTTAACCGGCGTCTTAGTCAAGTATGCG 1601
Query 1631 GCTAAAGTTGCTTCAACCTCAAACAATGA-TGAAT-GATATCATTAACAAGTGATC 1684
||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||
Sbjct 1602 GCTAAAGTTGCTTCAACCTCAAACAATGAATGA-TCGAT--CATTAACAAGTGATC 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70733584965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5