BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70210.1
Length=2020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926334 jgi|Araly1|926334|scaffold_201895.1 1624 0.0
> Ahg926334 jgi|Araly1|926334|scaffold_201895.1
Length=1073
Score = 1624 bits (879), Expect = 0.0
Identities = 1007/1067 (94%), Gaps = 16/1067 (1%)
Strand=Plus/Plus
Query 133 CTCCGGTTATGGGGAGAGAATGAGGAGTTACC-GTTT--TAGTGATTATCTACACATGTC 189
|||||||||||||||||||||||||||||||| |||| |||||||| | ||| ||||||
Sbjct 3 CTCCGGTTATGGGGAGAGAATGAGGAGTTACCGGTTTAGTAGTGATTGTGTACTCATGTC 62
Query 190 TGTTTCAT--T-C------TCTAACGATATGGATTTGTTTTGTGGAGAAGACTCCGGTGT 240
||||||| | | |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 63 AGTTTCATCCTCCGATTTTTCTAACGATATGGATTTGTTATGTGGAGAAGATTCCGGTGT 122
Query 241 GTTTTCCGGTGAGTCAACGGTTGATTTCTCGTCTTCCGAGGTTGATTCATGGCCTGG-TG 299
|||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| || ||
Sbjct 123 GTTTTCCGGTGAATCAACGGTTAATTTCTCGTCTTCTGAGGTTGATTCATGGCC-GGATG 181
Query 300 ATTCTATCGCTTGTTTTATCGAAGACGAGCGTCACTTCGTTCCTGGACATGATTATCTCT 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 182 ATTCTATCGCTTGTTTTATCGAAGACGAGCGTCACTTTGTTCCTGGACATGATTATCTCT 241
Query 360 CTAGATTTCAAACTCGATCTCTCGATGCTTCCGCTAGAGAAGATTCCGTCGCATGGATTC 419
||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 242 CTAGATTCCAAACTCAATCTCTCGATGCTTCCGCTAGAGAAGACTCCGTCGCATGGATTC 301
Query 420 TCAAGGTACAAGCGTATTATAACTTTCAGCCTTTAACGGCGTACCTCGCCGTTAACTATA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCAAGGTACAAGAGTATTATAACTTTCAGCCTTTAACGGCGTACCTCGCCGTTAACTATA 361
Query 480 TGGATCGGTTTCTTTACGCTCGTCGATTACCGGAAACGAGTGGTTGGCCAATGCAACTTT 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGGACCGGTTTCTTTACGCTCGTCGATTACCGGAAACGAGTGGTTGGCCAATGCAACTTT 421
Query 540 TAGCAGTGGCATGCTTGTCTTTAGCTGCAAAGATGGAGGAAATTCTCGTTCCTTCTCTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TAGCAGTGGCATGCTTGTCTTTAGCTGCAAAGATGGAGGAAATTCTCGTTCCTTCTCTTT 481
Query 600 TTGATTTTCAGGTTGCAGGAGTGAAGTATTTATTTGAAGCAAAAACTATAAAAAGAATGG 659
| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 482 TCGATTTTCAGGTTGCAGGAGTGAAGTATATATTTGAAGCAAAAACGATAAAGAGAATGG 541
Query 660 AACTTCTTGTTCTAAGTGTGTTAGATTGGAGACTAAGATCGGTTACACCGTTTGATTTCA 719
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 542 AACTTCTTGTTCTAAGTGTGTTAGATTGGAGACTAAGATCCGTTACACCGTTTGATTTCC 601
Query 720 TTAGCTTCTTTGCTTACAAGATCGATCCTTCGGGTACCTTTCTCGGGTTCTTTATCTCCC 779
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 602 TTAGCTTCTTTGCTTACAAGATCGATCCTTCGGGAACCTTTCTCGGGTTCTTTATCTCCC 661
Query 780 ATGCTACAGAGATTATACTCTCCAACATAAAAGAAGCGAGCTTTCTTGAGTACTGGCCAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ATGCTACAGAGATTATACTCTCCAACATAAAAGAAGCGAGCTTTCTTGAGTACTGGCCAT 721
Query 840 CGAGTATAGCTGCAGCCGCGATTCTCTGTGTAGCGAACGAGTTACCTTCTCTATCCTCTG 899
|||||||||||||||| |||||||||||||| || || ||| | |||||||| |||||||
Sbjct 722 CGAGTATAGCTGCAGCTGCGATTCTCTGTGTTGCCAATGAGCTCCCTTCTCTGTCCTCTG 781
Query 900 TTGTCAATCCCCACGAGAGCCCTGAGACTTGGTGTGACGGATTGAGCAAAGAGAAGATAG 959
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TTGTAAATCCCCACGAGAGCCCTGAGACTTGGTGTGACGGATTGAGCAAAGAGAAGATAG 841
Query 960 TGAGATGCTATAGACTGATGAAAGCGATGGCCATCGAGAATAACCGGTTAAATACACCAA 1019
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 842 TGAGATGCTATAGACTGATGAAAGCGATGGCGATAGAGAATAATCGGTTAAATACACCAA 901
Query 1020 AAGTGATAGCAAAGCTTCGAGTGAGTGTAAGGGCATCATCGACGTTAACAAGGCCAAGTG 1079
|||||||| ||||||||||||| || ||||||||| |||| |||||||||||||||||||
Sbjct 902 AAGTGATAACAAAGCTTCGAGTAAGCGTAAGGGCAGCATCAACGTTAACAAGGCCAAGTG 961
Query 1080 ATGAATCCTCTTTCTCATCCTCTTCTCCTTGTAAAAGGAGAAAATTAAGTGGCTATTCAT 1139
|||||||||||||||| || || ||||||||||||||||||||| ||||||||||||| |
Sbjct 962 ATGAATCCTCTTTCTCGTCATCATCTCCTTGTAAAAGGAGAAAACTAAGTGGCTATTCGT 1021
Query 1140 GGGTAGGTGATGAAACAT-CTACCTCTAATTAAAATTTGGGGAGTGA 1185
||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1022 GGGTAGGTGATGAAA-ATTCTACCTCTAATTAAAATGTGGGGAGTGA 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75951948530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5