BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70220.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476146 jgi|Araly1|476146|fgenesh2_kg.2__1276__AT1G70220.1 497 4e-140
> Ahg476146 jgi|Araly1|476146|fgenesh2_kg.2__1276__AT1G70220.1
Length=577
Score = 497 bits (269), Expect = 4e-140
Identities = 358/398 (90%), Gaps = 18/398 (5%)
Strand=Plus/Plus
Query 442 AACGTCGAGAAGATTGGTTTTGGTGTTACCGCAGAAGGGCAGATGATCTTTGACGCGATT 501
||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 184 AACGTCGAGAAAATTGGTTTTGGTGTTACCTCAGAAGCGCAGAAGATCTTTGACGCGATT 243
Query 502 TCTAAGACGCTTCCTATACGCTGGG-TGAACAAAGAA-ATGCTGGTAATGGGAGATGTGT 559
||||||||||||||||||||||||| | |||||| || ||||||||||||||||| |||
Sbjct 244 TCTAAGACGCTTCCTATACGCTGGGAT-AACAAA-AATATGCTGGTAATGGGAGAAGTGA 301
Query 560 TTATTCGTAGCCCTTATCATTCTGATTGTGTCTATGGAGGACCCCGTA-TGGTCAATGAA 618
|| |||||||||||||||||||||||||||||| ||||||| ||||| || |||||||
Sbjct 302 TTGTTCGTAGCCCTTATCATTCTGATTGTGTCTTTGGAGGAACCCGTGCTG-TCAATGAT 360
Query 619 CGAGTAAAG-CATGTGCTGGGGCAGGAGAGAAAGAAGTTGCAACTCAGTGACACCTGAG- 676
||||| ||| | |||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 361 CGAGTCAAGAC-TGTGCTGGAGCAGGTGAGAAAGAAGTTGCAACTCAGTGACACATGAGA 419
Query 677 -GAT---ATTGAAGGAGTTGTTCAATGAACATAGAGCAATAGCGTAAGTCTCT--TATCC 730
|| ||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TGAGGCCATTGATGGAGTTGTTCAATGAACATAGAGCAATAGCGTAAGTCTCTACTATCC 479
Query 731 CTAG-A--AGTACCCTAGATGTGATACCATGTGTAAATTCGATTCACGAGAAGAAGATTT 787
|||| | |||||||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct 480 CTAGTAGCAGTACCCTAGATCTGATGCCATGTGTAAATTCGCTTCACGATAAGAAGATTT 539
Query 788 AGAGATTTTTGAGTTGCAGAGATTTAATTTTGGTGTTG 825
|||||||||||||||||||||||| |||||||||||||
Sbjct 540 AGAGATTTTTGAGTTGCAGAGATTGAATTTTGGTGTTG 577
Score = 217 bits (117), Expect = 1e-55
Identities = 164/186 (88%), Gaps = 6/186 (3%)
Strand=Plus/Plus
Query 1 ATGAAACCAGCAAGTGCTACGGTGGCTAAAGTA-GACAGCGGAGGAGAGGACGAGAAATT 59
|||||||||||||||||||||||||||||| | ||| | | | |||| |||||||||||
Sbjct 1 ATGAAACCAGCAAGTGCTACGGTGGCTAAAC-ACGACGGTGAACGAGAAGACGAGAAATT 59
Query 60 CGAGGTGGGGAAGGTATACGCTGTCAAGCTGACCACCGGAGATC-AGTTCAATGGCATCG 118
|| |||||||| |||||||||||||||||||| |||||||| | ||||||||||||| |
Sbjct 60 CGCGGTGGGGACGGTATACGCTGTCAAGCTGATAACCGGAGA-CGAGTTCAATGGCATTG 118
Query 119 TCTTGGCTTATGATTCTGAACCCAACTTCGCCGTTTTCGATATCCTTTTTCGAAATC-GC 177
||||||| |||||||||| |||||||||| || ||||||||||||| |||||||||| |
Sbjct 119 TCTTGGCATATGATTCTGGACCCAACTTCTCCATTTTCGATATCCTATTTCGAAATCAG- 177
Query 178 TACTCG 183
||||||
Sbjct 178 TACTCG 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5