BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70230.1
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908608 jgi|Araly1|908608|Al_scaffold_0002_1689 1676 0.0
> Ahg908608 jgi|Araly1|908608|Al_scaffold_0002_1689
Length=1260
Score = 1676 bits (907), Expect = 0.0
Identities = 1153/1269 (91%), Gaps = 27/1269 (2%)
Strand=Plus/Plus
Query 145 ATGGGATT-AAACGAGCAAC-AAAATGTTCCAAGTCAGAGGAAGATCATAGTTTTTATAG 202
|||||||| ||| ||||||| ||| || || ||||||||||||||| |||||||||||||
Sbjct 1 ATGGGATTGAAA-GAGCAACGAAATTG-TCTAAGTCAGAGGAAGATTATAGTTTTTATAG 58
Query 203 TCTTAGCTTTTATACCAATAGCTCTGTTTCGACTCTGTTTTAATAATCCATTCTCCTCCA 262
|||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 59 TCTTGGCTTTTATACCAATAGCTCTGTTTCGACTCTGTTTTACTAATCCTTTCTCCGCCA 118
Query 263 TTAAAGACACCTCTCTTCAAGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCAT 322
|| | ||||||||||||||||| ||||||||| ||||||||||||| |||| |||||| |
Sbjct 119 TTGATGACACCTCTCTTCAAGAATCTGCAGCTCACGTTGTGATCACCAGCTACTCTTCTT 178
Query 323 CTTCTCAAGAAGAAGAAAGC-CAAGAGAGTTTTGATCATATACAA-GATGAACCTTTATG 380
|||||||||||||||||| | ||||||||||||||||||||| || || ||| ||||||
Sbjct 179 CTTCTCAAGAAGAAGAAA-CTCAAGAGAGTTTTGATCATATA-AAGGAGGAAAATTTATG 236
Query 381 CGATTATACGCAAGGGAACTGGGTCAGAGACGAGATTGGTCCACTCTACAATGGTTCAAC 440
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 CGATTATACACAAGGAAAATGGGTCAGAGACGAGATTGGTCCACTCTACAATGGTTCGAC 296
Query 441 ATGTGGAACAATCAAGGATGGTCAGAATTGTTTCCGCCATGGTAGACCTGATTCCGGTTA 500
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 297 CTGTGGAACAATCAAGGAAGGTCAAAACTGTTTCCGCCATGGTAGACCTGATTCCGGTTA 356
Query 501 TCTTTACTGGAAATGGAAACCAAACGAATGCGATATACCGAGATTCGACTCGAACCGGTT 560
|||||| |||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||
Sbjct 357 TCTTTATTGGAAATGGAAACCGAACCAATGCGATATACCGAGATTTGACGCGAACCGGTT 416
Query 561 TCTTGATCTTATGAGAGATAAGCATCTAGCTTTTATCGGTGATTCCATGGCTAGAAATCA 620
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 TCTTGATCTTATGAAAGACAAGCATCTAGCTTTTATTGGTGATTCCATGGCTAGAAATCA 476
Query 621 GCTTGAGTCTCTTTTATGCTTGCTCTCTACCGTCTCTAGCCCTGATCTCGTCTATAGAAA 680
||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 477 GCTTGAGTCTCTTATCTGCTTGCTCTCTACTGTCTCTAGCCCTGATCTCGTGTATAGAAA 536
Query 681 CGGAGAAGACAATAAATTCAG-AAGATGGCGTTTCGAGTCACACAACGTCACTGTCTCGG 739
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 537 CGGAGAAGACAATAAATTCAGAAAG-TGGCGTTTCGAGTCACACAACGTCACGGTCTCGG 595
Query 740 TTTACTGGTCCCCGTTTTTGGTGGCCGGTTTAGAGAAATCGGGAAACTTGGACCACAATG 799
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 596 TTTACTGGTCCCCATTTTTGGTGGCCGGTTTAGAGAAATCAGGAAACTTGGACCACAATG 655
Query 800 TATTGCACATAGACCGCGTGGATGAGAGATGGGGCAATGATTTAGAACGTTTTGATACGG 859
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 656 TATTGCACTTAGACCGCGTGGATGAGAGATGGGGCAATGATATAGAACGTATTGATACGG 715
Query 860 TCGTAGTCTCTGTGGGACATTGGTTTCTGCATCCAGCGGTTTACTACGAGTCTGGTTCGG 919
|||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||
Sbjct 716 TCGTAGTCTCTGTGGGACATTGGTTTCTGCATCCGGCGGTTTATTATGAGTCCGGTTCGG 775
Query 920 TTTTGGGATGTCATTCTTGTGAAACAAGTAACTGTACCGAGGTAGGGTTTTATGATGTAT 979
||||||||||||||||||||||| |||| |||||||||||||||||||| || ||||| |
Sbjct 776 TTTTGGGATGTCATTCTTGTGAAGCAAGCAACTGTACCGAGGTAGGGTTCTACGATGTGT 835
Query 980 TTAGAAAAGCGATAAGAACAACGTTGAGAG-CGGTTG-CTGGAAGTGGTCGTGAGGTGAT 1037
||||||||||||||||||||||||||| || | || | | ||| | | |||||||||||
Sbjct 836 TTAGAAAAGCGATAAGAACAACGTTGA-AGGCAGTGGTC-GGAGGCCGCCGTGAGGTGAT 893
Query 1038 CTTGACGACATTTTCGCCATCACATTTTGAAGGACGGCCTTGGGACAGTCTCGGCGCATG 1097
||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 894 CTTGACGACGTTTTCGCCGTCACATTTCGAAGGCCGGCCTTGGGACAGTCTCGGCGCATG 953
Query 1098 TAACATGACCAAGCCGTACGAAGGGAAGGTTTTAGAAGGTCTGGACTTGGACATGCG-CA 1156
|||||||||| |||| |||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct 954 TAACATGACCGAGCCATACGAAGGGAAGGTGTTAGAAGGTTTGGACTTGGATATGCGGCA 1013
Query 1157 AAATAGAAATTGAGGAATATACGGCGGCT---GCGGCTGA-GG-----TGAGGTTAGA-G 1206
| ||||||| ||||||| ||| ||||| ||||| | || |||||||| | |
Sbjct 1014 GA-TAGAAATGGAGGAATTTACTGCGGCCAAAGCGGCGGCCGGGGAGATGAGGTTA-ACG 1071
Query 1207 GTGTTGGACGTGACGGCTATGTCGGTACTGAGACCAGACGGACATCCTGGTCCGTACATG 1266
| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 1072 GCGTTGGACGTGACGGCGATGTCGGTGTTGAGACCAGACGGACATCCTGGTCCGTATATG 1131
Query 1267 TACGCGGACCCGTTCAAGAACGGTGTACCGGAGAGAATTCCTAATGATTGTTTGCATTGG 1326
||| | ||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 1132 TACTCATTTCCGTTCAAGAACGGTGTGCCGGAGAGAGTTCATAATGATTGTTTGCATTGG 1191
Query 1327 TGTCTACCTGGTCCTGTCGACACGTGGAACGAGATCATGATCGAGATGTTGCGGCGATGG 1386
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TGTCTGCCTGGTCCGGTCGACACGTGGAACGAGATCATGATCGAGATGTTGCGGCGATGG 1251
Query 1387 AAGGTTTAA 1395
|||||||||
Sbjct 1252 AAGGTTTAA 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60563489550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5